Skip to main content

High-Content Super-Resolution Imaging of Live Cell by uPAINT

  • Protocol
  • First Online:
Book cover Nanoimaging

Part of the book series: Methods in Molecular Biology ((MIMB,volume 950))

Abstract

In this chapter, we present the uPAINT method (Universal Point Accumulation Imaging in Nanoscale Topography), a simple single-molecule super-resolution method which can be implemented on any wide field fluorescence microscope operating in oblique illumination. The key feature of uPAINT lies in recording high numbers of single molecules at the surface of a cell by constantly labeling while imaging. In addition to generating super-resolved images, uPAINT can provide dynamical information on a single live cell with large statistics revealing localization-specific diffusion properties of membrane biomolecules. Interestingly, any membrane biomolecule that can be labeled with a fluorescent ligand can be studied, making uPAINT an extremely versatile method.

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Protocol
USD 49.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD 129.00
Price excludes VAT (USA)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD 179.00
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info
Hardcover Book
USD 169.99
Price excludes VAT (USA)
  • Durable hardcover edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

References

  1. Hell SW (2007) Far-field optical nanoscopy. Science 316:1153–1158

    Article  PubMed  CAS  Google Scholar 

  2. Huang B, Bates M, Zhuang X (2009) Super-resolution fluorescence microscopy. Annu Rev Biochem 78:993–1016

    Article  PubMed  CAS  Google Scholar 

  3. Betzig E et al (2006) Imaging intracellular fluorescent proteins at nanometer resolution. Science 313:1642–1645

    Article  PubMed  CAS  Google Scholar 

  4. Hess ST, Girirajan TP, Mason MD (2006) Ultra-high resolution imaging by fluorescence photoactivation localization microscopy. Biophys J 91:4258–4272

    Article  PubMed  CAS  Google Scholar 

  5. Rust MJ, Bates M, Zhuang XW (2006) Sub-diffraction-limit imaging by stochastic optical reconstruction microscopy (STORM). Nat Methods 3:793–795

    Article  PubMed  CAS  Google Scholar 

  6. Geissbuehler S, Dellagiacoma C, Lasser T (2011) Comparison between SOFI and STORM. Biomed Opt Express 2:408–420

    Article  PubMed  Google Scholar 

  7. Giannone G et al (2010) Dynamic superresolution imaging of endogenous proteins on living cells at ultra-high density. Biophys J 99:1303–1310

    Article  PubMed  CAS  Google Scholar 

  8. Sharonov A, Hochstrasser RM (2006) Wide-field subdiffraction imaging by accumulated binding of diffusing probes. Proc Natl Acad Sci U S A 103:18911–18916

    Article  PubMed  CAS  Google Scholar 

  9. Bobroff N (1986) Position measurements with a resolution and noise-limited instrument. Rev Sci Instrum 57:1152–1157

    Article  Google Scholar 

  10. Thompson RE, Larson DR, Webb WW (2002) Precise nanometer localization analysis for individual fluorescent probes. Biophys J 82:2775–2783

    Article  PubMed  CAS  Google Scholar 

  11. Tardin C, Cognet L, Bats C, Lounis B, Choquet D (2003) Direct imaging of lateral movements of AMPA receptors inside synapses. EMBO J 22:4656–4665

    Article  PubMed  CAS  Google Scholar 

  12. Grunwald C et al (2011) Quantum-yield-optimized fluorophores for site-specific labeling and super-resolution imaging. J Am Chem Soc 133:8090–8093

    Article  PubMed  CAS  Google Scholar 

  13. Groc L et al (2004) Differential activity-dependent regulation of the lateral mobilities of AMPA and NMDA receptors. Nat Neurosci 7:695–696

    Article  PubMed  CAS  Google Scholar 

  14. Starck J-L, Murtagh F (2006) Astronomical image and data analysis, 2nd edn. Springer, New York

    Google Scholar 

  15. Schmidt T, Schuetz GJ, Baumgartner W, Gruber HJ, Schindler H (1996) Imaging of single molecule diffusion. Proc Natl Acad Sci U S A 93:2926–2929

    Article  PubMed  CAS  Google Scholar 

  16. Cheezum MK, Walker WF, Guilford WH (2001) Quantitative comparison of algorithms for tracking single fluorescent particles. Biophys J 81:2378–2388

    Article  PubMed  CAS  Google Scholar 

  17. Racine V et al (2006) Multiple-target tracking of 3D fluorescent objects based on simulated annealing. 2006 3rd IEEE international symposium biomedical imaging: macro to nano, vols 1–3, IEEE international symposium on biomedical imaging, 1020–3

    Google Scholar 

  18. Shannon CE (1949) Communication in the presence of noise. Proc IRE 37:10–21

    Article  Google Scholar 

Download references

Acknowledgments

We wish to thank B. Lounis for helpful discussions. This research was funded by Centre National de la Recherche Scientifique (CNRS), the Région Aquitaine and the Agence Nationale pour la Recherche (ANR), the Fondation pour la Recherche Médicale, and the European Union’s seventh framework program for research and development ERC grant Nano-Dyn-Syn.

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Laurent Cognet .

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 2013 Springer Science+Business Media, LLC

About this protocol

Cite this protocol

Giannone, G., Hosy, E., Sibarita, JB., Choquet, D., Cognet, L. (2013). High-Content Super-Resolution Imaging of Live Cell by uPAINT. In: Sousa, A., Kruhlak, M. (eds) Nanoimaging. Methods in Molecular Biology, vol 950. Humana Press, Totowa, NJ. https://doi.org/10.1007/978-1-62703-137-0_7

Download citation

  • DOI: https://doi.org/10.1007/978-1-62703-137-0_7

  • Published:

  • Publisher Name: Humana Press, Totowa, NJ

  • Print ISBN: 978-1-62703-136-3

  • Online ISBN: 978-1-62703-137-0

  • eBook Packages: Springer Protocols

Publish with us

Policies and ethics