Skip to main content

Advertisement

Log in

Faba bean polerovirus 1 (FBPV-1); a new polerovirus infecting legume crops in Australia

  • Annotated Sequence Record
  • Published:
Archives of Virology Aims and scope Submit manuscript

Abstract

A new polerovirus species with the proposed name faba bean polerovirus 1 (FBPV-1) was found in winter legume crops and weeds in New South Wales, Australia. We describe the complete genome sequence of 5,631 nucleotides, containing all putative open reading frames, from two isolates, one from faba bean (Vicia faba) and one from chickpea (Cicer arietinum). FBPV-1 has a genome organization typical of poleroviruses with six open reading frames. However, recombination analysis strongly supports a recombination event in which the 5′ portion of FBPV-1, which encodes for proteins P0, P1 and P1-P2, appears to be from a novel parent with a closest nucleotide identity of only 66% to chickpea chlorotic stunt virus. The 3′ portion of FBPV-1 encodes for proteins P3, P4 and P3-P5 and shares 94% nucleotide identity to a turnip yellows virus isolate from Western Australia.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Fig. 1

Similar content being viewed by others

References

  1. Abraham AD, Menzel W, Lesemann DE, Varrelmann M, Vetten HJ (2006) Chickpea chlorotic stunt virus: a new polerovirus infecting cool-season food legumes in Ethiopia. Phytopathology 96:437–446

    Article  CAS  PubMed  Google Scholar 

  2. Abraham AD, Varrelmann M, Vetten HJ (2008) Molecular evidence for the occurrence of two new luteoviruses in cool season food legumes in Northeast Africa. Afr J Biotechnol 7:414–420

    CAS  Google Scholar 

  3. Asif MH, Dhawan P, Nath P (2000) A simple procedure for the isolation of high quality RNA from ripening banana fruit. Plant Mol Biol Rep 18:109–115

    Article  CAS  Google Scholar 

  4. Bortolamiol D, Pazhouhandeh M, Marrocco K, Genschik P, Ziegler-Graff V (2007) The polerovirus F box protein P0 targets ARGONAUTE1 to suppress RNA silencing. Curr Biol 17:1615–1621

    Article  CAS  PubMed  Google Scholar 

  5. Brault V, van den Heuvel JF, Verbeek M, Ziegler-Graff V, Reutenauer A, Herrbach E, Garaud JC, Guilley H, Richards K, Jonard G (1995) Aphid transmission of beet western yellows luteovirus requires the minor capsid read-through protein P74. EMBO J 14:650–659

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  6. Bushnell B (2016) BBTools: a suit of bioinformatic tools used for DNA and RNA sequence data analysis. http://jgi.doe.gov/data-and-tools/bbtools/. Accessed 23 May 2016

  7. Congdon BS, Kehoe MA, Filardo FF, Coutts BA (2019) In-field capable loop-mediated isothermal amplification detection of Turnip yellows virus in plants and its principal aphid vector Myzus persicae. J Virol Methods 265:15–21

    Article  CAS  PubMed  Google Scholar 

  8. Freeman A, Aftab M (2011) Effective management of viruses in pulse crops in south eastern Australia should include management of weeds. Australas Plant Pathol 40:430–441

    Article  Google Scholar 

  9. Gibbs A, Mackenzie A (1997) A primer pair for amplifying part of the genome of all potyvirids by RT-PCR. J Virol Methods 63:9–16

    Article  CAS  PubMed  Google Scholar 

  10. Guilley H, Wipf-Scheibel C, Richards K, Lecoq H, Jonard G (1994) Nucleotide sequence of cucurbit aphid-borne yellows luteovirus. Virology 202:1012–1017

    Article  CAS  PubMed  Google Scholar 

  11. Herrbach E (1999) Vector-virus interaction. In: Smith HG, Barker H (eds) The luteoviridae. CAB International, Wallingford, pp 85–146

    Google Scholar 

  12. Jaag HM, Kawchuk L, Rohde W, Fischer R, Emans N, Prüfer D (2003) An unusual internal ribosomal entry site of inverted symmetry directs expression of a potato leafroll polerovirus replication-associated protein. Proc Natl Acad Sci 100:8939–8944

    Article  CAS  PubMed  Google Scholar 

  13. Johnson M, Zaretskaya I, Raytselis Y, Merezhuk Y, McGinnis S, Madden TL (2008) NCBI BLAST: a better web interface. Nucleic Acids Res 36:W5–W9

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  14. Katul L (1992) Characterization by serology and molecular biology of bean leaf roll virus and faba bean necrotic yellows virus. PhD thesis, University of Göttingen, Göttingen, Germany, p 115

  15. King AM, Lefkowitz E, Adams MJ, Carstens EB (2011) Virus taxonomy: ninth report of the International Committee on Taxonomy of Viruses. Elsevier, San Diego

    Google Scholar 

  16. Kozlowska-Makulska A, Hasiow-Jaroszewska B, Szyndel M, Herrbach E, Bouzoubaa S, Lemaire O, Beuve M (2015) Phylogenetic relationships and the occurrence of interspecific recombination between beet chlorosis virus (BChV) and Beet mild yellowing virus (BMYV). Arch Virol 160:429–433

    Article  CAS  PubMed  Google Scholar 

  17. Lim S, Yoo RH, Igori D, Zhao F, Kim KH, Moon JS (2015) Genome sequence of a recombinant brassica yellows virus infecting Chinese cabbage. Arch Virol 160:597–600

    Article  CAS  PubMed  Google Scholar 

  18. Lin Y-H, Gao S-J, Damaj MB, Fu H-Y, Chen R-K, Mirkov TE (2014) Genome characterization of sugarcane yellow leaf virus from China reveals a novel recombinant genotype. Arch Virol 159:1421–1429

    Article  CAS  PubMed  Google Scholar 

  19. Makkouk KM, Comeau A (1994) Evaluation of various methods for the detection of barley yellow dwarf virus by the tissue-blot immunoassay and its use for virus detection in cereals inoculated at different growth stages. Eur J Plant Pathol 100:71

    Article  Google Scholar 

  20. Martin DP, Murrell B, Golden M, Khoosal A, Muhire B (2015) RDP4: Detection and analysis of recombination patterns in virus genomes. Virus Evol 1:vev003

    Article  PubMed  PubMed Central  Google Scholar 

  21. Mayo MA, Ziegler-Graff V (1996) Molecular biology of luteoviruses. Adv Virus Res 46:413–460

    Article  CAS  PubMed  Google Scholar 

  22. Mayo MA, Miller WA (1999) The structure and expression of luteovirus genomes. In: Smith HG, Barker H (eds) The luteoviridae. CAB International, Wallingford, pp 23–42

    Google Scholar 

  23. Miller WA, Liu S, Beckett R (2002) Barley yellow dwarf virus: luteoviridae or tombusviridae? Mol Plant Pathol 3:177–183

    Article  CAS  PubMed  Google Scholar 

  24. Najar A, Kumari SG, Attar N, Lababidi S (2011) Present status of some virus diseases affecting legume crops in Tunisia, and partial characterization of Chickpea chlorotic stunt virus. Phytopathol Mediterr 50:310–315

    Google Scholar 

  25. Pagan I, Holmes EC (2010) Long-term evolution of the Luteoviridae: time scale and mode of virus speciation. J Virol 84:6177–6187

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  26. Ray JD, Sharman M, Quintao V, Rossel B, Westaway J, Gambley C (2016) Cotton leafroll dwarf virus detected in Timor-Leste. Australas Plant Dis Notes 11:29

    Article  CAS  Google Scholar 

  27. Reinhart BJ, Weinstein EG, Rhoades MW, Bartel B, Bartel DP (2002) MicroRNAs in plants. Gene Dev 16:1616–1626

    Article  CAS  PubMed  Google Scholar 

  28. Schmitz J, Stussi-Garaud C, Tacke E, Prüfer D, Rohde W, Rohfritsch O (1997) In situ localization of the putative movement protein (pr17) from potato leafroll luteovirus (PLRV) in infected and transgenic potato plants. Virology 235:311–322

    Article  CAS  PubMed  Google Scholar 

  29. Sharman M, Thomas JE (2013) Genetic diversity of subgroup 1 ilarviruses from eastern Australia. Arch Virol 158:1637–1647

    Article  CAS  PubMed  Google Scholar 

  30. Sharman M, Lapbanjob S, Sebunruang P, Belot JL, Galbieri R, Giband M, Suassuna N (2015) First report of Cotton leafroll dwarf virus in Thailand using a species-specific PCR validated with isolates from Brazil. Australas Plant Dis Notes 10:1–4

    Article  Google Scholar 

  31. Sharman M, Kehoe M, Coutts B, van Leur J, Filardo F, Thomas J (2016) Two complete genome sequences of phasey bean mild yellows virus, a novel member of the luteoviridae from Australia. Genome Announc 4:e01569-01515

    Article  Google Scholar 

  32. Smirnova E, Firth AE, Miller WA, Scheidecker D, Brault V, Reinbold C, Rakotondrafara AM, Chung BYW, Ziegler-Graff V (2015) Discovery of a small non-AUG-initiated ORF in poleroviruses and luteoviruses that is required for long-distance movement. PLoS Pathog 11:e1004868

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  33. van den Heuvel JF, Bruyère A, Hogenhout SA, Ziegler-Graff V, Brault V, Verbeek M, van der Wilk F, Richards K (1997) The N-terminal region of the luteovirus readthrough domain determines virus binding to Buchnera GroEL and is essential for virus persistence in the aphid. J Virol 71:7258–7265

    PubMed  PubMed Central  Google Scholar 

  34. van der Wilk F, Verbeek M, Dullemans AM, van den Heuvel JFJM (1997) The genome-linked protein of potato leafroll virus is located downstream of the putative protease domain of the ORF1 product. Virology 234:300–303

    Article  PubMed  Google Scholar 

  35. Ziegler-Graff V, Brault V, Mutterer JD, Simonis MT, Herrbach E, Guilley H, Richards KE, Jonard G (1996) The coat protein of beet western yellows luteovirus is essential for systemic infection but the viral gene products P29 and P19 are dispensable for systemic infection and aphid transmission. Mol Plant Microbe Interact 9(6):501–510

    Article  CAS  Google Scholar 

Download references

Acknowledgements

This study was funded by Australian Grains Research and Development Corporation projects DAQ00154, DAQ00186 and DAN00202.

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Fiona F. Filardo.

Ethics declarations

Conflict of interest

The authors declare there are no conflicts of interest.

Ethical approval

This article does not contain any studies with human participants or animals performed by any of the authors.

Additional information

Handling Editor: Robert H. A. Coutts.

Publisher's Note

Springer Nature remains neutral with regard to jurisdictional claims in published maps and institutional affiliations.

GenBank accession numbers MH464873–MH464875.

Electronic supplementary material

Below is the link to the electronic supplementary material.

Supplementary material 1 (TXT 5 kb)

Supplementary material 2 (TXT 5 kb)

Rights and permissions

Reprints and permissions

About this article

Check for updates. Verify currency and authenticity via CrossMark

Cite this article

Filardo, F.F., Thomas, J.E., Webb, M. et al. Faba bean polerovirus 1 (FBPV-1); a new polerovirus infecting legume crops in Australia. Arch Virol 164, 1915–1921 (2019). https://doi.org/10.1007/s00705-019-04233-w

Download citation

  • Received:

  • Accepted:

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1007/s00705-019-04233-w

Navigation