Access this chapter
Tax calculation will be finalised at checkout
Purchases are for personal use only
Preview
Unable to display preview. Download preview PDF.
References
Baulcombe D (2004) RNA silencing in plants. Nature 431:356–363
Birnbaum K, Shasha DE, Wang JY, Jung JW, Lambert GM, Galbraith DW, Benfey PN (2003) A gene expression map of the Arabidopsis root. Science 302:1956–1960
Boisnard-Lorig C, Colon-Carmona A, Bauch M, Hodge S, Doerner P, Bancharel E, Dumas C, Haseloff J, Berger F (2001) Dynamic analyses of the expression of the HISTONE:YFP fusion protein in Arabidopsis show that syncytial endosperm is divided in mitotic domains. Plant Cell 13:495–509
Borevitz JO, Xia Y, Blount J, Dixon RA, Lamb C (2000) Activation tagging identifies a conserved MYB regulator of phenylpropanoid biosynthesis. Plant Cell 12:2383–2394
Bougourd S, Marrison J, Haseloff J (2000) An aniline blue staining procedure for confocal microscopy and 3D imaging of normal and perturbed cellular phenotypes in mature Arabidopsis embryos. Plant J 24:543–550
Brand AH, Perrimon N (1993) Targeted gene expression as a means of altering cell fates and generating dominant phenotypes. Development 118:401–415
Brandt SP (2005) Microgenomics: gene expression analysis at the tissue-specific and single-cell levels. J Exp Bot 56:495–505
Cotsaftis O, Guiderdoni E (2005) Enhancing gene targeting efficiency in higher plants: rice is on the move. Transgen Res 14:1–14
Dong Y, von Arnim AG (2003) Novel plant activation-tagging vectors designed to minimize 35S enhancer-mediated gene silencing. Plant Mol Biol Rep 21: 349–358
Duffy JB (2002) GAL4 system in Drosophila: a fly geneticist’s Swiss army knife. Genesis 34:1–15
Finkel E (1999) Australian center develops tools for developing world. Science 5433:1481–1483
Fridborg I, Kuusk S, Moritz T, Sundberg E (1999) The Arabidopsis dwarf mutant shiexhibits reduced gibberellin responses conferred by over-expression of a new putative zinc finger protein. Plant Cell 11:1019–1031
Gallois JL, Nora FR, Mizukami Y, Sablowski R (2004) WUSCHEL induces shoot stem cell activity and developmental plasticity in the root meristem. Genes Dev 18:375–380
Grant JJ, Chini A, Basu D, Loake GJ (2003) Targeted activation tagging of the Arabidopsis NBS-LRR gene, ADR1, conveys resistance to virulent pathogens. Mol Plant Microbe Interact 16:669–680
Haseloff J (1999) GFP variants for multispectral imaging of living cells. Methods Cell Biol 58:139–151
Hirochika H, Guiderdoni E, An G, Hsing Y, Eun MY, Han C, Upadhyaya N, Ramachandran S, Zhang Q, Pereira A, Sundaresan V, Leung H (2004) Rice mutant resources for gene discovery. Plant Mol Biol 54:325–334
Hsing Y-I, Chern C-G, Fan M-J, Lu P-C, Chen K-T, Lo S-F, Ho S-L, Lee K-W, Wang Y-C, Sun P-K, Ko R, Huang W-L, Chen J-L, Chung C-I, Lin Y-C, Hour A-L, Wang Y-W, Chang Y-C, Tsai M-W, Lin Y-S, Chen Y-C, Chen S, Yen H-M, Li C-P, Wey C-K, Tseng C-S, Lai M-H, Chen L-J, Yu S-M (2007) A rice gene activation/knockout mutant resource for high throughput functional genomics. Plant Mol Biol, doi (10.1007/s 11103-006-9093) 63:351–364
Huang S, Cerny RE, Bhat DS, Brown SM (2001) Cloning of an Arabidopsis patatin-like gene, STURDY, by activation T-DNA tagging. Plant Physiol 125: 573–584
Ichikawa T, Nakazawa M, Kawashima M, Muto S, Gohda K, Suzuki K, Ishikawa A, Kobayashi H, Yoshizumi T, Tsumoto Y, Tsuhara Y, Iizumi H, Goto Y, Matsui M (2003) Sequence database of 1172 T-DNA insertion sites in Arabidopsis activation-tagging lines that showed phenotypes in T1 generation. Plant J 36:421–429
International Rice Genome Sequencing Project (2005) The map-based sequence of the rice genome. Nature 436:793–800
Ito T, Meyerowitz EM (2000) Over-expression of a gene encoding a cytochrome P450, CYP78A9, induces large and seedless fruit in Arabidopsis. Plant Cell 12:1541–1550
Ito Y, Eiguchi M, Kurata N (2004) Establishment of an enhancer trap system with Ds and GUS for functional genomics in rice. Mol Genet Genom 271:639–650
Jeon J, Sichul L, Ki-Hong J, Jun S, Jeong D, Lee J, Kim C, Jang S, Lee S, Yang K, Nam J, An K, Han M, Sung R, Choi H, Yu J, Choi J, Cho S, Cha S, Kim S, An G (2000) T-DNA insertional mutagenesis for functional genomics in rice. Plant J 22:561–570
Jeong DH, An S, Kang HG, Moon S, Han JJ, Park S, Lee HS, An K, An G (2002) T-DNA insertional mutagenesis for activation tagging in rice. Plant Physiol 130:1636–1644
Jeong DH, An S, Park S, Kang HG, Park GG, Kim SR, Sim J, Kim YO, Kim MK, Kim SR, Kim J, Shin M, Jung M, An G (2006) Generation of a flanking sequence-tag database for activation-tagging lines in japonica rice. Plant J 45:123–132
Johnson AAT, Hibberd JM, Gay C, Essah PA, Haseloff J, Tester M, Guiderdoni E (2005) Spatial control of transgene expression in rice (Oryza sativa L.) using the GAL4 enhancer trapping system. Plant J 41:779–789
Kakimoto T (1996) CKI1, a histidine kinase homolog implicated in cytokinin signal transduction. Science 274:982–985
Kardailsky I, Shukla VK, Ahn JH, Dagenais N, Christensen SK, Nguyen JT, Chory J, Harrison MJ, Weigel D (1999) Activation tagging of the floral inducer FT. Science 286:1962–1965
Kerk NM, Ceserani T, Tausta SL, Sussex IM, Nelson TM (2003) Laser capture microdissection of cells from plant tissues. Plant Physiol 132:27–35
Kiegle E, Moore C, Haseloff J, Tester M, Knight M (2000) Cell-type specific calcium responses to drought, NaCl, and cold in Arabidopsis root: a role for endodermis and pericycle in stress signal transduction. Plant J 23:267–278
Lee H, Suh S, Park E, Cho E, Ahn JH, Kim S, Lee JS, Kwon, YM, Lee I (2000) The AGAMOUS-LIKE 20 MADS domain protein integrates floral inductive pathways in Arabidopsis.Genes Dev 14:2366–2376
Li J, Lease KA, Tax FE, Walker JC (2001) BRS1, a serine carboxypeptidase, regulates BRI1 signaling in Arabidopsis thaliana. Proc Natl Acad Sci USA 98:5916–5921
Li J, Wen J, Lease KA, Doke JT, Tax FE, Walker JC (2002) BAK1, an Arabidopsis LRR receptor-like protein kinase, interacts with BRI1 and modulates brassinosteroid signaling. Cell 110:213–222
Liang D, Wu C, Li C, Xu C, Zhang J, Kilian A, Li X, Zhang Q, Xiong L (2006) Establishment of a patterned GAL4/VP16 transactivation system for discovering gene function in rice. Plant J 46:1059–1072
Marsch-Martinez N, Greco R, Arkel VG, Herrera-Estrella L, Pereira A (2002) Activation tagging using the En-I maize transposon system in Arabidopsis. Plant Physiol 129:1544–1556
Masaki T, Tsukagoshi H, Mitsui N, Nishii T, Hattori T, Morikami A, Nakamura K (2005) Activation tagging of a gene for a protein with novel class of CCT-domain activates expression of a subset of sugar-inducible genes in Arabidopsis thaliana. Plant J 43:142–152
Matsuhara S, Jingu F, Takahashi T, Komeda Y (2000) Heat shock tagging: a simple method for expression and isolation of plant genome DNA flanked by T-DNA insertions. Plant J 22:79–86
Miki D, Itoh R, Shimamoto K (2005) RNA silencing of single and multiple members in a gene family of rice. Plant Physiol 138:1903–1913
Moore I, Samalova M, Kurup S (2006) Transactivated and chemically inducible gene expression in plants. Plant J 45:651–683
Nakazono M, Qiu F, Borsuk LA, Schnable PS (2003) Laser-capture microdissection, a tool for the global analysis of gene expression in specific plant cell types: identification of genes expressed differentially in epidermal cells or vascular tissues of maize. Plant Cell 15:583–596
Nawy T, Lee JY, Colinas J, Wang JY, Thongrod SC, Malamy JE, Birnbaum K, Benfey PN (2005) Transcriptional profile of the Arabidopsis root quiescent center. Plant Cell 17:1908–1925
Neff MM, Nguyen SM, Malancharuvil EJ, Fujioka S, Noguchi T, Seto H, Tsubuki M, Honda T, Takatsuto S, Yoshida S, Chory J (1999) BAS1: a gene regulating brassinosteroid levels and light responsiveness in Arabidopsis. Proc Natl Acad Sci USA 96:15316–15323
Odell JT, Nagy F, Chua N (1985) Identification of DNA sequences required for activity of the cauliflower mosaic virus 35S promoter. Nature 313:810–812
Peng H, Huang H, Yang Y, Zhai Y, Wu J, Huang D, Lu T (2005) Functional analysis of GUS expression patterns and T-DNA integration characteristics in rice enhancer trap lines. Plant Sci 168:1571–1579
Phelps CB, Brand AH (1998) Ectopic gene expression in Drosophila using GAL4 system. Methods 14:367–379
Rørth P (1996) A modular misexpression screen in Drosophiladetecting tissue-specific phenotypes. Proc Natl Acad Sci USA 93:12418–12422
Sabatini S, Heidstra R, Wildwater M, Scheres B (2003) SCARECROW is involved in positioning the stem cell niche in the Arabidopsis root meristem. Genes Dev 17:354–358
Schaffer R, Ramsay N, Samach A, Corden S, Putterill J, Carré IA, Coupland G (1998) The late elongated hypocotylmutation of Arabidopsisdisrupts circadian rhythms and the photoperiodic control of flowering. Cell 93: 1219–1229
Schwab R, Ossowski S, Riester M, Warthmann N, Weigel D (2006) Highly specific gene silencing by artificial microRNAs in Arabidopsis. Plant Cell 18:1121–1133
Sun J, Niu QW, Tarkowski P, Zheng B, Tarkowska D, Sandberg G, Chua NH, Zuo J (2003) The Arabidopsis AtIPT8/PGA22 gene encodes an isopentenyl transferase that is involved in de novo cytokinin biosynthesis. Plant Physiol 131:167–176
Terada R, Urawa H, Inagaki Y, Tsugane K, Iida S (2002) Efficient gene targeting by homologous recombination in rice. Nat Biotech 20:1030–1034
Tester M, Davenport R (2003) Na+ tolerance and Na+ transport in higher plants. Ann Bot 91:503–527
The Arabidopsis Genome Initiative (2000) Analysis of the genome sequence of the flowering plant Arabidopsis thaliana. Nature 408:796–815
Toba G, Ohsako T, Miyata N, Ohtsuka T, Seong KH, Aigaki T (1999) The gene search system: a method for efficient detection and rapid molecular identification of genes in Drosophila melanogaster. Genetics 151:725–737
van der Graaff E, Dulk-Ras AD, Hooykaas PJ, Keller B (2000) Activation tagging of the LEAFY PETIOLE gene affects leaf petiole development in Arabidopsis thaliana. Development 127:4971–4980
van der Graaff E, Hooykaas PJ, Keller B (2002) Activation tagging of the two closely linked genes LEP and VAS independently affects vascular cell number. Plant J 32:819–830
Walden, R, Fritze K, Hayashi H, Miklashevichs E, Harling H, Schell J (1994) Activation tagging: a means of isolating genes implicated as playing a role in plant growth and development. Plant Mol Biol 26:1521–1528
Weigel D, Ahn JH, Blázquez MA, Borevitz JO, Christensen SK, Fankhauser C, Ferrandiz C, Kardailsky I, Malancharuvil EJ, Neff MM, Nguyen JT, Sato S, Wang ZY, Xia Y, Dixon RA, Harrison MJ, Lamb CJ, Yanofsky MF, Chory J (2000) Activation Tagging in Arabidopsis. Plant Physiol 122:1003–1013
Wilson K, Long D, Swinburne J, Coupland G (1996) A Dissociation insertion causes a semidominant mutation that increases expression of TINY, an Arabidopsis gene related to APETALA2. Plant Cell 8:659–671
Wu C, Li X, Yuan W, Chen G, Kilian A, Li J, Xu C, Li X, Zhou DX, Wang S, Zhang Q (2003) Development of enhancer trap lines for functional analysis of the rice genome. Plant J 35:418–427
Yang Y, Peng H, Huang H, Wu J, Jia S, Huang D, Lu T (2004) Large-scale production of enhancer trapping lines for rice functional genomics. Plant Sci 167:281–288
Zhang J, Li C, Wu C, Xiong L, Chen G, Zhang Q, Wang S (2006) RMD: a rice mutant database for functional analysis of the rice genome. Nucl Acids Res 34:745–748
Zhao Y, Christensen SK, Fankhauser C, Cashman JR, Cohen JD, Weigel D, Chory J (2001) A role for flavin monooxygenase-like enzymes in auxin biosynthesis. Science 291:306–309
Zuo J, Niu QW, Frugis G, Chua NH (2002) The WUSCHEL gene promotes vegetative-to-embryonic transition in Arabidopsis. Plant J 30:349–359
Author information
Authors and Affiliations
Rights and permissions
Copyright information
© 2007 Springer Science+Business Media, LLC
About this chapter
Cite this chapter
Johnson, A.A., Yu, SM., Tester, M. (2007). Activation Tagging Systems in Rice. In: Rice Functional Genomics. Springer, New York, NY. https://doi.org/10.1007/0-387-48914-2_13
Download citation
DOI: https://doi.org/10.1007/0-387-48914-2_13
Publisher Name: Springer, New York, NY
Print ISBN: 978-0-387-48903-2
Online ISBN: 978-0-387-48914-8
eBook Packages: Biomedical and Life SciencesBiomedical and Life Sciences (R0)