Abstract
Amyloid aggregation is a hallmark in many neuropathologies and other diseases of tremendous impact. It is increasingly evident that neuronal death associated with Alzheimer’s disease (AD) is mainly produced by oligomers of the amyloid-β (Aβ) peptide. Yet little is known about the detailed structural and biophysical mechanisms of their formation. This lack of complete understanding comes from the labile nature and handling complexity of the oligomers. Consequently, providing reproducible and robust protocols for oligomer preparation is of particular importance.
In this study, we describe detailed methods for the preparation and isolation of micellar oligomers of Aβ that evolve towards larger and more stable oligomers enriched in beta-sheet structure and able to acquire a higher capacity to fibrillate. We also describe briefly some biophysical experiments allowing oligomer characterization.
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References
Cline EN, Bicca MA, Viola KL et al (2018) The Amyloid-beta oligomer hypothesis: beginning of the third decade. J Alzheimers Dis 64(s1):S567–S610
Ono K, Condron MM, Teplow DB (2009) Structure-neurotoxicity relationships of amyloid beta-protein oligomers. Proc Natl Acad Sci USA 106(35):14745–14750
Walsh DM, Selkoe DJ (2007) A beta oligomers – a decade of discovery. J Neurochem 101(5):1172–1184
Benilova I, Karran E, De Strooper B (2012) The toxic Abeta oligomer and Alzheimer’s disease: an emperor in need of clothes. Nat Neurosci 15(3):349–357
Roychaudhuri R, Yang M, Hoshi MM et al (2009) Amyloid beta-protein assembly and Alzheimer disease. J Biol Chem 284(8):4749–4753
Shankar GM, Li S, Mehta TH et al (2008) Amyloid-beta protein dimers isolated directly from Alzheimer’s brains impair synaptic plasticity and memory. Nat Med 14(8):837–842
Lambert MP, Barlow AK, Chromy BA et al (1998) Diffusible, nonfibrillar ligands derived from Abeta1-42 are potent central nervous system neurotoxins. Proc Natl Acad Sci USA 95(11):6448–6453
Yang T, Li S, Xu H et al (2017) Large soluble oligomers of Amyloid beta-protein from Alzheimer brain are far less neuroactive than the smaller oligomers to which they dissociate. J Neurosci 37(1):152–163
Yasumoto T, Takamura Y, Tsuji M et al (2019) High molecular weight amyloid beta1-42 oligomers induce neurotoxicity via plasma membrane damage. Faseb J 33(8):9220–9234
Barghorn S, Nimmrich V, Striebinger A et al (2005) Globular amyloid beta-peptide oligomer – a homogenous and stable neuropathological protein in Alzheimer’s disease. J Neurochem 95(3):834–847
Hoshi M, Sato M, Matsumoto S et al (2003) Spherical aggregates of beta-amyloid (amylospheroid) show high neurotoxicity and activate tau protein kinase I/glycogen synthase kinase-3beta. Proc Natl Acad Sci USA 100(11):6370–6375
Morel B, Conejero-Lara F (2019) Early mechanisms of amyloid fibril nucleation in model and disease-related proteins. Biochim Biophys Acta Proteins Proteom 1867(11):140264
Morel B, Varela L, Azuaga AI et al (2010) Environmental conditions affect the kinetics of nucleation of amyloid fibrils and determine their morphology. Biophys J 99(11):3801–3810
Ruzafa D, Conejero-Lara F, Morel B (2013) Modulation of the stability of amyloidogenic precursors by anion binding strongly influences the rate of amyloid nucleation. Phys Chem Chem Phys 15(37):15508–15517
Ruzafa D, Varela L, Azuaga AI et al (2014) Mapping the structure of amyloid nucleation precursors by protein engineering kinetic analysis. Phys Chem Chem Phys 16(7):2989–3000
Lopes DH, Sinha S, Rosensweig C et al (2012) Application of photochemical cross-linking to the study of oligomerization of amyloidogenic proteins. Methods Mol Biol 849:11–21
Morel B, Carrasco MP, Jurado S et al (2018) Dynamic micellar oligomers of amyloid beta peptides play a crucial role in their aggregation mechanisms. Phys Chem Chem Phys 20(31):20597–20614
Bitan G, Kirkitadze MD, Lomakin A et al (2003) Amyloid beta -protein (Abeta) assembly: Abeta 40 and Abeta 42 oligomerize through distinct pathways. Proc Natl Acad Sci USA 100(1):330–335
Jan A, Hartley DM, Lashuel HA (2010) Preparation and characterization of toxic Abeta aggregates for structural and functional studies in Alzheimer’s disease research. Nat Protoc 5(6):1186–1209
Ladiwala AR, Litt J, Kane RS et al (2012) Conformational differences between two amyloid beta oligomers of similar size and dissimilar toxicity. J Biol Chem 287(29):24765–24773
Sabate R, Estelrich J (2005) Evidence of the existence of micelles in the fibrillogenesis of beta-amyloid peptide. J Phys Chem B 109(21):11027–11032
Yong W, Lomakin A, Kirkitadze MD et al (2002) Structure determination of micelle-like intermediates in amyloid beta -protein fibril assembly by using small angle neutron scattering. Proc Natl Acad Sci USA 99(1):150–154
Brender JR, Krishnamoorthy J, Sciacca MF et al (2015) Probing the sources of the apparent irreproducibility of amyloid formation: drastic changes in kinetics and a switch in mechanism due to micellelike oligomer formation at critical concentrations of IAPP. J Phys Chem B 119(7):2886–2896
Wälti MA, Orts J, Vogeli B et al (2015) Solution NMR studies of recombinant Abeta(1-42): from the presence of a micellar entity to residual beta-sheet structure in the soluble species. ChemBioChem 16(4):659–669
Kamgar-Parsi K, Hong L, Naito A et al (2017) Growth-incompetent monomers of human calcitonin lead to a noncanonical direct relationship between peptide concentration and aggregation lag time. J Biol Chem 292(36):14963–14976
Teplow DB (2006) Preparation of amyloid beta-protein for structural and functional studies. Method Enzymol 413:20–33
Aguiar J, Carpena P, Molina-Bolivar JA et al (2003) On the determination of the critical micelle concentration by the pyrene 1:3 ratio method. J Colloid Interface Sci 258(1):116–122
Cerf E, Sarroukh R, Tamamizu-Kato S et al (2009) Antiparallel beta-sheet: a signature structure of the oligomeric amyloid beta-peptide. Biochem J 421(3):415–423
Ruysschaert JM, Raussens V (2018) ATR-FTIR analysis of Amyloid proteins. Method Mol Biol 1777:69–81
Sarroukh R, Goormaghtigh E, Ruysschaert J-M et al (2013) ATR-FTIR: a rejuvenated tool to investigate amyloid proteins. Biochim Biophys Acta Biomembr 1828(10):2328–2338
Morel B, Conejero-Lara F (2020) Molecular mechanisms of amyloid aggregation in human proteinopathies. In: Pey AL (ed) Protein homeostasis diseases. Academic Press, pp 153–179
Acknowledgments
Research on amyloid beta was funded by Grant BIO2013-40697-R from the Spanish Ministry of Economy and Competitiveness and by the European Regional Development Fund of the European Union.
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Morel, B., Conejero-Lara, F. (2023). Preparation and Investigation of Crucial Oligomers in the Early Stages of Aβ40 and Aβ42 Aggregation. In: Cieplak, A.S. (eds) Protein Aggregation. Methods in Molecular Biology, vol 2551. Humana, New York, NY. https://doi.org/10.1007/978-1-0716-2597-2_2
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DOI: https://doi.org/10.1007/978-1-0716-2597-2_2
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