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Microbial Environmental Genomics (MEG) pp 271–291Cite as

MycoCosm, the JGI’s Fungal Genome Portal for Comparative Genomic and Multiomics Data Analyses

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Part of the book series: Methods in Molecular Biology ((MIMB,volume 2605))

Abstract

MycoCosm (https://mycocosm.jgi.doe.gov/) is an integrated fungal genomics portal that currently includes over 2000 fungal genomes. Efficiently exploring these genomes allows the scientific community to address challenges associated with energy and the environment. Here, we provide examples and guidelines for navigating around MycoCosm, and for using a variety of analysis tools to compare genomics and other “omics” data from the fungus Neocallimastix californiae with its relatives.

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Authors and Affiliations

  1. U.S Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA, USA

    Steven R. Ahrendt, Stephen J. Mondo, Sajeet Haridas & Igor V. Grigoriev

Authors
  1. Steven R. Ahrendt
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  2. Stephen J. Mondo
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  3. Sajeet Haridas
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  4. Igor V. Grigoriev
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Corresponding author

Correspondence to Igor V. Grigoriev .

Editor information

Editors and Affiliations

  1. Tree-Microbe Interact (IAM); Biogeochem, UMR1136 INRA/University of Lorraine, Labex ARB, Champenoux, France

    Francis Martin

  2. Université de Lorraine, INRAE, UMR1136 “Interactions Arbres-Microorganismes”, F-54280 Champenoux, France

    Stephane Uroz

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© 2023 The Author(s), under exclusive license to Springer Science+Business Media, LLC, part of Springer Nature

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Ahrendt, S.R., Mondo, S.J., Haridas, S., Grigoriev, I.V. (2023). MycoCosm, the JGI’s Fungal Genome Portal for Comparative Genomic and Multiomics Data Analyses. In: Martin, F., Uroz, S. (eds) Microbial Environmental Genomics (MEG). Methods in Molecular Biology, vol 2605. Humana, New York, NY. https://doi.org/10.1007/978-1-0716-2871-3_14

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  • DOI: https://doi.org/10.1007/978-1-0716-2871-3_14

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  • Publisher Name: Humana, New York, NY

  • Print ISBN: 978-1-0716-2870-6

  • Online ISBN: 978-1-0716-2871-3

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