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Unstructured Information Management Architecture (UIMA)

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References

  • Alan R, Aronson Franois-Michel Lang (2010) An overview of MetaMap: historical perspective and recent advances. J Am Med Inform Assoc 17(3):229–236

    PubMed  Google Scholar 

  • Bird S, Klein E, Loper E (2009) Natural language processing with Python. O'Reilly Media, Beijing

    Google Scholar 

  • Cunningham H, Maynard D, Bontcheva K, Tablan V, Aswani N, Roberts I, Gorrell G, Funk A, Roberts A, Damljanovic D, Heitz T, Greenwood MA, Saggion H, Petrak J, Li Y, Peters W (2011) Text processing with GATE (Version 6). http://gate.ac.uk/gate/doc/papers.html

  • Ferrucci D, Lally A, Verspoor K (eds) (2009) Unstructured information management architecture (UIMA) version 1.0. OASIS Standard, 2 March 2009

    Google Scholar 

  • Jonquet C, Shah NH, Musen MA (2009) The open biomedical annotator. Summit Trans Bioinform :56–60

    Google Scholar 

  • Ogren PV, Wetzler PG, Bethard S (2008) ClearTK: a UIMA toolkit for statistical natural language processing. In: Towards enhanced interoperability for large HLT systems: UIMA for NLP workshop at language resources and evaluation conference (LREC), Marrakech, Morocco

    Google Scholar 

  • Roeder C, Jonquet C, Shah NH, Baumgartner WA Jr, Verspoor K, Hunter L (2010) A UIMA wrapper for the NCBO annotator. Bioinformatics 26(14):1800–1801

    Article  PubMed  CAS  Google Scholar 

  • Verspoor K, Baumgartner W, Roeder C, Hunter L (2009) Abstracting the types away from a UIMA type system. In: Chiarcos C, Eckhart de Castilho R, Stede M (eds) Von der Form aur Bedeutung: text automatisch verarbeiten [From form to meaning: processing texts automatically]. Gunter Narr Verlag, Tubingen, pp 249–256

    Google Scholar 

  • Yoshinobu Kano, William A. Baumgartner, Jr, Luke McCrohon, Sophia Ananiadou, K. Bretonnel Cohen, Lawrence Hunter, Jun’ichi Tsujii (2009) U-Compare: share and compare text mining tools with UIMA. Bioinformatics 25(15):1997–1998. doi:10.1093/bioinformatics/btp289. http://bioinformatics.oxfordjournals.org/content/25/15/1997.short

    Article  PubMed  CAS  Google Scholar 

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Author information

Authors and Affiliations

  1. Victoria Research Laboratory, National ICT Australia, University of Melbourne, Level 2, Building 193, Melbourne, VIC, 3010, Australia

    Karin Verspoor Ph.D.

  2. Center for Computational Pharmacology, University of Colorado, PO Box 6511, MS 8303, Aurora, CO, 80045, USA

    Karin Verspoor Ph.D.

  3. University of Colorado Denver, PO Box 6511, MS 8303, Aurora, CO, 80045, USA

    William A. Baumgartner Jr

Authors
  1. Karin Verspoor Ph.D.
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  2. William A. Baumgartner Jr
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Corresponding author

Correspondence to Karin Verspoor Ph.D. .

Editor information

Editors and Affiliations

  1. Biomedical Sciences Research Institute, University of Ulster, Coleraine, UK

    Werner Dubitzky

  2. Department of Computer Science, University of Rostock, Rostock, Germany

    Olaf Wolkenhauer

  3. Department of Bio and Brain Engineering, Korea Advanced Institute of Science and Technology (KAIST), Daejeon, Republic of Korea

    Kwang-Hyun Cho

  4. Department of Biomedical Engineering, Rensselaer Polytechnic Institute, Troy, NY, USA

    Hiroki Yokota

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Verspoor, K., Baumgartner, W.A. (2013). Unstructured Information Management Architecture (UIMA). In: Dubitzky, W., Wolkenhauer, O., Cho, KH., Yokota, H. (eds) Encyclopedia of Systems Biology. Springer, New York, NY. https://doi.org/10.1007/978-1-4419-9863-7_183

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