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Molecular Markers, Forest Genetics, and Tree Breeding

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Genomes of Plants and Animals

Abstract

Several years ago, Strauss et al. (1992) thoughtfully evaluated the application of molecular markers in forest tree breeding for marker aided selection. The purpose of their paper was to emphasize the limitations and shortcomings of marker-aided selection particularly in conifers. They argued that studies of quantitative trait loci identified in agronomic crops, which have significant utility (e.g. Stuber, 1992; Stuber et al., 1992), are of little relevance to assessing the potential for marker aided selection in populations of forest trees, and that the near term usefulness of molecular markers for forest tree breeding will be limited. The major barriers to application included cost, the lack of association of markers with traits across breeding populations due to linkage equilibrium, variation in expression of loci affecting quantitative traits due to differences in genetic background, genotype environment interactions, and stability of marker-trait associations over multiple generations. In addition, Strauss et al. (1992) noted that marker-aided selection would be most useful for within family selection, where the economic values of the traits are high, the trait heritabilities are low, and where markers are able to explain much of the genetic variance. However, they argued that important traits in forest trees such as wood volume, are likely to be controlled by large numbers of genes with small effects, and therefore, are unlikely to have useful marker trait associations.

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References

  • Beavis, W.D., Grant, D., Albertsen, M., and Fincher, F. 1991, Quantitative trait loci for plant height in four maize populations and their associations with quantitative genetic loci, Theor. Appi. Genet. 83: 141–145.

    Google Scholar 

  • Bradshaw, H.D. Jr., and Foster, G.S., 1992, Marker aided selection and propagation systems in trees: advantages of cloning for studying quantitative inheritance, Can. J. For. Res. 22: 1044–1049.

    Article  Google Scholar 

  • Bradshaw, H.D. Jr., and Stettler, R.F., 1995, Molecular genetics of growth and development in Populus: N. Mapping QTLs with large effects on growth, form and phenology traits in a forest tree, Genetics 139: 963–973.

    CAS  Google Scholar 

  • Caetano-Anolles, G., Bassam, B.J., and Gresshoff, P.M., 1991, High resolution DNA amplification fingerprinting using very short arbitrary oligonucleotide primers, Bio/Technology 9: 553–557.

    Article  PubMed  CAS  Google Scholar 

  • Carlson, J.E, Tuliseriam, LK., Glaubitz, J.C., Luk, V.W.K., and Kauffeldt, C. 1991, Segregation of random amplified DNA markers in Fi progeny of conifers, Theor. Appl. Genet. 87: 805–815.

    Google Scholar 

  • Carson, S.D., and Carson, M.J., 1989, Breeding for resistance in forest trees: a quantitative approach, Annu. Rev. Phytopathology 277: 375–395.

    Google Scholar 

  • Conkle, M.T., 1981, Isozyme variation and linkage is six conifer species, in: “Proceedings of the symposium on isozymes in North American forest trees and forest insects.” Pacific Southwest F.xpt. Stn.. USDA Genet. Tech. Rep. PSW-48. pp. 11–17.

    Google Scholar 

  • Doebley, J., 1993, Genetics, development, and plant evolution. Current Opin. Genet. Develop. 6: 865–872.

    Article  Google Scholar 

  • Falconer, D.S., 1989, “Introduction to Quantitative Genetics”, 3rd. edition. Longman Scientific and Technical, Essex, U.K. 438 pp.

    Google Scholar 

  • Goldman, I.L, Rocheford, T.R, and Dudley, J.W., 1994, Molecular markers associated with maize kernel oil concentration in an Illinois high protein x Illinois low protein cross, Crop Science 34: 908–915.

    Article  Google Scholar 

  • Grattapaglia, D., 1994, Genetic mapping of quantitatively inherited economically important traits in Eucalyptus. PhD Dissertation, North Carolina State University, Raleigh, NC, USA.

    Google Scholar 

  • Grattapaglia, D., Wilcox, P., Chaparro, J.X., O’Malley, D.M., McCord, S., Whetten, R., McIntyre, L, and Sederoff, R., 1991, A RAPD map of loblolly pine in 60 days. in “Proceedings of the 3rd International Congress of Plant Molecular Biology”, Tucson, AZ, Abstract #2224.

    Google Scholar 

  • Grattapaglia, D., and Sederoff, R., 1994, Genetic linkage maps of Eucalyptus grandis and Eucalyptus urophylla using a pseudo-testcross: Mapping strategy and RAPD markers, Genetics 137: 1121–1137.

    PubMed  CAS  Google Scholar 

  • Grattapaglia, D., Bertolucci, F.L, and Sederoff, R., 1995, Genetic mapping of QTLs controlling vegetative propagation in Eucalyptus grandis and E. urophylla using a pseudo-testcross strategy and RAPD markers, Theor. Appl. Genet. 90: 933–947.

    CAS  Google Scholar 

  • Groover, A., Devey, M., Fiddler, T., Lee, J., Megraw, T., Mitchell-Olds, T., Sherman, B., Vujcic, C., Williams, C., Neale, D., 1994, Identification of quantitative trait loci influencing wood specific gravity in an outbred pedigree of loblolly pine, Genetics 138: 1293–1300.

    PubMed  CAS  Google Scholar 

  • Hamrick, J.L, Godt, M.J.W., Sherman-Broyles, S.L, 1992, Factors influencing levels of genetic diversity in woody plant species, New Forests 6: 95–124.

    Article  Google Scholar 

  • Hayes, P.M., Liu, B.-H., Knapp, S.J., Chen, F., Jones, B., Blake, T., Frankowiak, J., Rasmusson, D., Sorrells, M., Ullrich, S.E., Wesenberg, D., and Kleinhofs, A., 1994, Quantitative trait locus effects and environmental interactions in a sample of North American barley germplasm, Theor. Appl. Genet. 87: 39 2401.

    Google Scholar 

  • Kinloch, B.B., and Walkinshaw, C.H., 1991, Resistance to fusiform rust in Southern pines: how is it inherited? in “Proc. 3rd IUFRO Rusts of Pine Working Party Conference, Northern Forestry Center, Forestry Canada. Inf. Rep. NOR-X-317”: pp 219–228.

    Google Scholar 

  • Kinloch, B.B., Parks, G.K., and Fowler, C.W., 1970, White pine blister rust: simply inherited resistance in sugar pine, Science 167: 193–195.

    Article  PubMed  Google Scholar 

  • Kuhlman, E.G., Amerson, H.V., and Wilcox, P.L., 1995, Recent research on fusiform rust disease. in “Proc. 4th IUFRO Rusts of Pines Working Party Conf.”, Tsukuba: 17–21.

    Google Scholar 

  • Lande, R, and Thompson, R., 1990, Efficiency of marker aided selection in the improvement of quantitative traits, Genetics 124: 743–756.

    PubMed  CAS  Google Scholar 

  • Lander, E.S., Green, P., Abrahamson, J., Baarlow, A., and Daly, M.J. 1987, MAPMAKER,: an interactive computer package for constructing primary genetic linkage maps of experimental and natural populations, Genomics 1: 174–181.

    Article  PubMed  CAS  Google Scholar 

  • Liu, B.-H., and Knapp, S.J., 1990, GMENDEL• a program for Mendelian segregation and linkage analysis of individual or multiple progeny using loglikelihood ratios, J. Hered. 81: 407.

    Google Scholar 

  • Liu, B.-H., Sederoff, R, O’Malley, D., 1993, Linkage mapping using open pollinated populations. in “Proc. 22nd Southern Forest Tree Improvement Conf.” June 14, 1993, Atlanta GA. p489.

    Google Scholar 

  • McKeand, S.E, and Bridgwater, F.E., 1992, Third generation breeding strategy for the NCSU-Industry Tree Improvement Program. in “Proc. IUFRO Conference S2. 02–08, Breeding Tropical Trees”, Cartagena, Colombia, pp 234–240.

    Google Scholar 

  • Moesseler, A., Egger, K.N., and Hughes, G.A., 1992, Low levels of genetic diversity in red pine confirmed by random amplified DNA markers, Can. J. For. Res. 22: 1332–1337.

    Article  Google Scholar 

  • Millar, C.I., 1983, A steep dine in Pin us muricata., Evolution 37: 311–319.

    Article  Google Scholar 

  • Nance, W.L, Tuskan, G.A., Nelson, C.D., and Doudrick, R., 1992, Potential applications of molecular markers for genetic analysis of host pathogen systems in forest trees, Can. J. For. Res. 22: 1036–1043.

    Article  CAS  Google Scholar 

  • Neale, D.B., and Williams, C.G., 1991, Restriction fragment length polymorphism mapping in conifers and application to forest genetics and tree improvement, Can. J. For. Res. 21: 545–264.

    Article  CAS  Google Scholar 

  • Patterson, A.H., Damon, S., Hewitt, J.D., Zamir, D., Rabinowitch, H.D., Lincoln, S.E, Lander, È.S., and Tanksley, S.D., 1991, Mendelian factors underlying quantitative traits in tomato: Comparison across species and environments, Genetics 127: 181–197.

    Google Scholar 

  • Plomion, C., O’Malley, D.M., Durel, C.E., 1995. Genomic analysis in maritime pine (Pin us pinaster): Comparison of two RAPD maps using selfed seeds and open-pollinated seeds of the same individual, Theor. Appl Genet., (in press).

    Google Scholar 

  • Robinson, R.A., 1987, in “Host management in crop pathosystems”, Macmillan Publishing Co. N.Y. pp 263.

    Google Scholar 

  • Strauss, S.H., Lande, R, and Namkoong, G., 1992, Limitations of molecular marker aided selection in forest tree breeding, Can. J. For. Res. 22: 1050–1061.

    Article  CAS  Google Scholar 

  • Stuber, C.W., 1992, Biochemical and molecular markers in plant breeding. in “Plant Breeding Reviews”, Vol 9. Dudley, J.W., Hallauer, A.R., and Ryder, M. eds. J. Wiley and Sons, Inc. pp 37–61.

    Google Scholar 

  • Stuber, C.W., Lincoln, S.E., Wolff, D.W., Helentjaris, T., and Lander, ES., 1992, Identification of genetic factors contributing to heterosis in a hybrid from two elite maize inbred lines using molecular markers, Genetics 132: 823839.

    Google Scholar 

  • Tanksley, S.D., 1993, Mapping polygenes, Ann.Rev. Genet. 27: 205–233.

    Article  PubMed  CAS  Google Scholar 

  • Tulseriam, LK., Glaubitz, J.C., Kiss, G., and Carlson, J.E, 1992. Single tree genetic linkage mapping in conifers using haploid DNA from megagametophytes, Bio/Technology 10: 686–690.

    Article  Google Scholar 

  • Welsh, J., and McClelland, M., 1990, Fingerprinting genomes using PCR with arbitrary primers, Nucleic Acids Res. 19: 303–306.

    Article  Google Scholar 

  • Wheeler, N.C., and Guries, R.P., 1982, Population structure, genic diversity, and morphological variation in Pin us contorta Dougl., Can. J. For. Res. 12: 595606.

    Google Scholar 

  • Wilcox, P., 1995, Genetic dissection of fusiform rust resistance in loblolly pine. PhD Dissertation. North Carolina State University, Raleigh, NC, USA.

    Google Scholar 

  • Williams, C.G., and Neale, D.B., 1992, Conifer wood quality and marker aided selection: a case study, Can. J. For. Res. 22: 1009–1017.

    Article  Google Scholar 

  • Williams, J.G.K., Kubelik, A.R, Livak, K.J., Rafalski, J.A., and Tingey, S.V., 1990, DNA polymorphisms amplified as arbitrary primers are useful genetic markers, Nucleic Acids Res. 18: 6531–6535.

    Article  PubMed  CAS  Google Scholar 

  • Zabeau, M., 1993, Selective restriction fragment amplification: a general method for DNA fingerprinting. European Patent Application. Publication No. 0 534 858 Al.

    Google Scholar 

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O’Malley, D.M. et al. (1996). Molecular Markers, Forest Genetics, and Tree Breeding. In: Gustafson, J.P., Flavell, R.B. (eds) Genomes of Plants and Animals. Stadler Genetics Symposia Series. Springer, Boston, MA. https://doi.org/10.1007/978-1-4899-0280-1_7

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  • DOI: https://doi.org/10.1007/978-1-4899-0280-1_7

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