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Dried and Hydrated X-Ray Scattering Analysis of Amyloid Fibrils

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Protein Folding, Misfolding, and Disease

Part of the book series: Methods in Molecular Biology ((MIMB,volume 752))

Abstract

Wide angle X-ray scattering is a key technique for the analysis of amyloid fibrils that can be used to ­confirm the presence of a characteristic cross-beta fibril structure and to characterise the arrangement of beta-strands and beta-sheets within this fibril core. Further structural insight can be obtained by the comparison of X-ray scattering data obtained for dried and hydrated fibril samples. We describe simple techniques for the preparation of dried and hydrated fibril samples for X-ray analysis and the subsequent analysis of X-ray scattering patterns using custom built and readily available software.

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References

  1. Sunde, M., Serpell, L.C., Bartlam, M., Fraser, P.E., Pepys, M.B., Blake, C.C.F. (1997) Common core structure of amyloid fibrils by synchrotron X-ray diffraction. J Mol Biol. 273, 72939.

    Article  PubMed  CAS  Google Scholar 

  2. Wiltzius, J.J.W., Sievers, S.A., Sawaya, M.R., Cascio, D., Popov, D., Riekel, C., et al. (2008) Atomic structure of the cross-beta spine of islet amyloid polypeptide (amylin). Protein Sci. 17, 1467–74.

    Article  PubMed  CAS  Google Scholar 

  3. Castelletto, V., Hamley, I.W. (2007) Beta-Lactoglobulin Fibers under Capillary Flow. Biomacromolecules. 8, 77–83.

    Article  PubMed  CAS  Google Scholar 

  4. Vestergaard, B., Groenning, M., Roessle, M., Kastrup, J.S., de Weert, M.V., Flink, J.M., et al. (2007) A Helical Structural Nucleus Is the Primary Elongating Unit of Insulin Amyloid Fibrils. PLoS Biology. 5, e134.

    Article  PubMed  Google Scholar 

  5. Squires, A.M., Devlin, G.L., Gras, S.L., Tickler, A.K., MacPhee, C.E., Dobson, C.M. (2006) Ray scattering study of the effect of hydration on the cross-beta structure of amyloid fibrils. J Am Chem Soc. 128, 11738–9.

    Article  PubMed  CAS  Google Scholar 

  6. Kendall, A., Stubbs, G. (2006) Oriented sols for fiber diffraction from limited quantities or hazardous materials. J Appl Crystallogr. 39, 39–41.

    Article  CAS  Google Scholar 

  7. McDonald, M., Kendalla, A., Tanaka, M., Weissman, J.S., Stubbs, G. (2008) Enclosed chambers for humidity control and sample containment in fiber diffraction. J Appl Crystallogr. 41, 2069.

    Article  CAS  Google Scholar 

  8. Makin, O.S., Serpell, L.C. (2005) X-Ray diffraction studies of amyloid fibrils, in Methods in Molecular Biology. (Sigurdsson, E. M., ed.), Humana, Totowa, NJ, pp. 67–80.

    Google Scholar 

  9. Kishimoto, A., Hasegawa, K., Suzuki, H., Taguchi, H., Namba, K., Yoshida, M. (2004) beta-Helix is a likely core structure of yeast prion Sup35 amyloid fibers. Biochem Biophys Res Commun. 315, 739–45.

    Article  PubMed  CAS  Google Scholar 

  10. Makin, O.S., Sikorski, P., Serpell, L.C. (2007) CLEARER: a new tool for the analysis of X-ray fibre diffraction patterns and diffraction simulation from atomic structural models. J Appl Crystallogr. 40, 966–72.

    Article  Google Scholar 

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Correspondence to Adam M. Squires .

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Gras, S.L., Squires, A.M. (2011). Dried and Hydrated X-Ray Scattering Analysis of Amyloid Fibrils. In: Hill, A., Barnham, K., Bottomley, S., Cappai, R. (eds) Protein Folding, Misfolding, and Disease. Methods in Molecular Biology, vol 752. Humana Press, Totowa, NJ. https://doi.org/10.1007/978-1-60327-223-0_10

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  • DOI: https://doi.org/10.1007/978-1-60327-223-0_10

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  • Publisher Name: Humana Press, Totowa, NJ

  • Print ISBN: 978-1-60327-221-6

  • Online ISBN: 978-1-60327-223-0

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