Abstract
The ability to measure mRNA encoding protein is attractive, since, provided certain criteria are met, the investigator can be confident of highly selective detection. In addition, changes in mRNA expression as well as their precise cellular localization, provides the scientist with important information that may not be evident by the detection of the translated protein. Hence, the combined approach of assessing mRNA and protein expression will often allow a more precise hypothesis to be formulated. In the present chapter, we describe methods we have optimized for the detection of mRNA following extraction from tissue or cells (Northern hybridization) and the detection of specific mRNA transcripts within their synthesising cells (in situ hybridization).
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Gall JG, Pardue ML (1969) Formation and detection of RNA-DNA hybrid molecules in cytological preparations. Proc Natl Acad Sci U S A 63:378–383
John HA, Birnstiel ML, Jones KW (1969) RNA-DNA hybrids at the cytological level. Nature 223:582–587
Alwine JC, Kemp DJ, Stark GR (1977) Method for detection of specific RNAs in agarose gels by transfer to diazobenzyloxymethyl-paper and hybridization with DNA probes. Proc Natl Acad Sci U S A 74:5350–5354
Parker RMC, Fleetwood-Walker SM, Rosie R, Munro FE, Mitchell R (1993) Inhibition by NK2 but not NK1 antagonists of carrageenan-induced preprodynorphin mRNA expression in rat dorsal horn lamina I neurons. Neuropeptides 25:213–222
Rabadan-Diehl C, Lolait SJ, Aguilera G (1995) Regulation of pituitary vasopressin V1b receptor mRNA during stress in the rat. J Neuroendocrinol 7:903–910
Ciossek T, Millauer B, Ullrich A (1995) Identification of alternatively spliced mRNAs encoding varients of MDK1, a novel receptor tyrosine kinase expressed in the murine nervous system. Oncogene 10:97–108
Rigby M, Le Bourdelles B, Heavens RP, Kelly S, Smith D, Butler A, Hammans R, Hills R, Xuereb JH, Hill RG, Whiting PJ, Sirinathsinghji DJ (1996) The messenger RNAs for the N-methyl-D-aspartate receptor subunits show region-specific expression of different subunit composition in the human brain. Neuroscience 73:429–447
Gustafson EL, Durkin MM, Bard JA, Zgombick J, Branchek TA (1996) A receptor autoradiographic and in situ hybridisation analysis of the distribution of the 5-HT7 receptor in rat brain. Brain J Pharmacol 117:657–666
Taketazu F, Kato M, Gobl A, Ichijo H, ten Dijke P, Itoh J, Kyogoku M, Ronnelid J, Miyazono K, Heldin CH (1994) Enhanced expression of transforming growth factor-beta s and transforming growth factor-beta type II receptor in the synovial tissues of patients with rheumatoid arthritis. Lab Invest 70:620–630
Harrington KA, Augood SJ, Faull RL, McKenna PJ, Emson PC (1995) Dopamine D1 receptor, D2 receptor, proenkephalin A and substance P gene expression in the caudate nucleus of control and schizophrenic tissue: a quantitative cellular in situ hybridisation study. Brain Res Mol Brain Res 33:333–342
Adcock IM, Peters M, Gelder C, Shirasaki H, Brown CR, Barnes PJ (1993) Increased tachykinin receptor gene expression in asthmatic lung and its modulation by steroids. J Mol Endocrinol 11:1–7
Kia HK, Miquel MC, McKernan RM, Laporte AM, Lombard MC, Bourgoin S, Hamon M, Verge D (1995) Localization of 5-HT3 receptors in the rat spinal cord: immunohistochemistry and in situ hybridization. Neuroreport 6:257–261
Noguchi K, Kawalski K, Traub R, Solodkin A, Iadarola MJ, Ruda MA (1991) Dynorphin expression and Fos-like immunoreactivity following inflammation induced hyperalgesia are colocalised in spinal cord neurones. Mol Brain Res 10:227–233
Morales M, Bloom FE (1997) The 5-HT3 receptor is present in different subpopulations of GABAergic neurons in the rat telencephalon. J Neurosci 17:3157–3167
Sambrook J, Fritsch EF, Maniatis T (1989) Molecular cloning: a laboratory manual, 2nd edn. Cold Spring Harbour Laboratory Press, New York
Hames BD, Higgins SJ (eds) (1987) Nucleic acid hybridisation a practical approach. IRL Press Oxford University Press, Oxford
Lee EY, Ji H, Ouyang Z, Zhou B, Ma W, Vokes SA, McMahon AP, Wong WH, Scott MP (2010) Hedgehog pathway-regulated gene networks in cerebellum development and tumorigenesis. Proc Natl Acad Sci U S A 107:9736–9741
Valentino KL, Eberwine JH, Barchas JD (eds) (1987) In situ hybridisation: applications to neurobiology. Oxford University Press, New York, pp 57–58
Wilkinson DG (ed) (1993) In situ hybridisation: a practical approach. IRL Press Oxford University Press, New York
Princivalle AP, Duncan JS, Thom M, Bowery NG (2003) GABAB1a, GABAB1b and GABAB2 mRNA variants expression in hippocampus resected from patients with temporal lobe epilepsy. Neuroscience 122:975–984
Belelli D, Balcarek JM, Hope AG, Peters JA, Lambert JJ, Blackburn TP (1995) Cloning and functional expression of a human 5-hydroxytryptamine type 3As receptor subunit. Mol Pharmacol 48:1054–1062
Parker RMC, Barnes JM, Ge J, Barber PC, Barnes NM (1996) Autoradiographic distribution of (3H)-(s)-zacopride-labelled 5-HT3 receptors in human brain. J Neurol Sci 144:119–127
Dopazo J, Zanders E, Dragoni I, Amphlett G, Falciani F (2001) Methods and approaches in the analysis of gene expression data. J Immunol Methods 250:93–112
Chomczynski P, Sacchi N (1987) Single-step method of RNA isolation by acid guanidinium thiocyanate-phenol-chloroform extraction. Anal Biochem 162:156–159
Kaupmann K, Huggel K, Heid J, Flor PJ, Bishoff S, Mickel SJ, McMaster G, Angst C, Bittigher H, Frestl W, Bettler B (1997) Expression cloning of GABAB receptors uncovers similarity to metabotropic glutamate receptors. Nature 368:239–246
Kaupman K, Malitschek B, Shuler V, Heid J, Froestl W, Beck P, Mosbacher J, Bishoff S, Kulik A, Shigemoto R, Karschin A, Bettler B (1998) GABAB receptor subtypes assemble into functional heterodimeric complex. Nature 396:683–687
Battaglia G, Princivalle A, Forti F, Lizier C, Zeviani M (1997) Expression of SMN gene, the spinal muscular atrophy determining gene, in the mammalian central nervous system. Hum Mol Genet 6:1961–1971
Barnes NM, Sharp T (1999) A review of central 5-HT receptors and their function. Neuropharmacology 38:1083–1152
Rigby PWT, Dieckmann M, Rhodes C, Berg P (1977) Labelling deoxyribonucleic acid to high specific activity in vitro by nick translation with DNA polymerase I. J Mol Biol 113:237–251
Feinberg AP, Vogelstein B (1983) A technique for radiolabelling DNA restriction endonuclease fragments to high specific activity. Anal Biochem 132:6–13
Lewis ME, Sherman TG, Watson SJ (1985) In situ hybridisation histochemistry with synthetic oligonucleotides: strategies and methods. Peptides 6(suppl 2):75–87
Emson PC (1993) In-situ hybridisation as a methodological tool for the neuroscientist. Trends Neurosci 16:9–16
Mitchell BS, Dhami D, Schumacher U (1992) Review article: In situ hybridisation: a review of methodologies and applications in the biomedical sciences. Med Lab Sci 49:107–118
Ratcliff RC (1974) Terminal deoxynucleotidyl transferase. In: Boyer PD (ed) The enzymes, vol XIV, 3rd edn. Academic, New York, pp 105–118
Angerer LM, Angerer RC (1992) In situ hybridisation to cellular RNA with radiolabelled RNA probes. In: Wilkinson DG (ed) In situ hybridization a practical approach. IRL Press Oxford University Press, Oxford, pp 15–32
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Princivalle, A.P., Parker, R.M.C., Dover, T.J., Barnes, N.M. (2012). Detection of mRNA Encoding Receptors by In Situ and Northern Hybridization. In: Davenport, A. (eds) Receptor Binding Techniques. Methods in Molecular Biology, vol 897. Humana Press, Totowa, NJ. https://doi.org/10.1007/978-1-61779-909-9_13
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DOI: https://doi.org/10.1007/978-1-61779-909-9_13
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