Skip to main content

Fetal Pose Estimation in Volumetric MRI Using a 3D Convolution Neural Network

  • Conference paper
  • First Online:

Part of the book series: Lecture Notes in Computer Science ((LNIP,volume 11767))

Abstract

The performance and diagnostic utility of magnetic resonance imaging (MRI) in pregnancy is fundamentally constrained by fetal motion. Motion of the fetus, which is unpredictable and rapid on the scale of conventional imaging times, limits the set of viable acquisition techniques to single-shot imaging with severe compromises in signal-to-noise ratio and diagnostic contrast, and frequently results in unacceptable image quality. Surprisingly little is known about the characteristics of fetal motion during MRI and here we propose and demonstrate methods that exploit a growing repository of MRI observations of the gravid abdomen that are acquired at low spatial resolution but relatively high temporal resolution and over long durations (10–30 min). We estimate fetal pose per frame in MRI volumes of the pregnant abdomen via deep learning algorithms that detect key fetal landmarks. Evaluation of the proposed method shows that our framework achieves quantitatively an average error of 4.47 mm and 96.4% accuracy (with error less than 10 mm). Fetal pose estimation in MRI time series yields novel means of quantifying fetal movements in health and disease, and enables the learning of kinematic models that may enhance prospective mitigation of fetal motion artifacts during MRI acquisition.

J. Xu and M. Zhang—Equal contribution.

This is a preview of subscription content, log in via an institution.

Buying options

Chapter
USD   29.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD   39.99
Price excludes VAT (USA)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD   54.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Learn about institutional subscriptions

References

  1. Biglari, H., Sameni, R.: Fetal motion estimation from noninvasive cardiac signal recordings. Physiol. Meas. 37(11), 2003 (2016)

    Article  Google Scholar 

  2. Heazell, A.P., Frøen, J.: Methods of fetal movement counting and the detection of fetal compromise. J. Obstet. Gynaecol. 28(2), 147–154 (2008)

    Article  Google Scholar 

  3. Newell, A., Yang, K., Deng, J.: Stacked hourglass networks for human pose estimation. In: Leibe, B., Matas, J., Sebe, N., Welling, M. (eds.) ECCV 2016. LNCS, vol. 9912, pp. 483–499. Springer, Cham (2016). https://doi.org/10.1007/978-3-319-46484-8_29

    Chapter  Google Scholar 

  4. Schmidt, M.: UGM: Matlab code for undirected graphical models (2012). http://www.di.ens.fr/mschmidt/Software/UGM.html

  5. Loshchilov, I., Hutter, F.: Fixing weight decay regularization in adam. arXiv preprint arXiv:1711.05101 (2017)

  6. Çiçek, Ö., Abdulkadir, A., Lienkamp, S.S., Brox, T., Ronneberger, O.: 3D U-Net: learning dense volumetric segmentation from sparse annotation. In: Ourselin, S., Joskowicz, L., Sabuncu, M.R., Unal, G., Wells, W. (eds.) MICCAI 2016. LNCS, vol. 9901, pp. 424–432. Springer, Cham (2016). https://doi.org/10.1007/978-3-319-46723-8_49

    Chapter  Google Scholar 

  7. Payer, C., Štern, D., Bischof, H., Urschler, M.: Regressing heatmaps for multiple landmark localization using CNNs. In: Ourselin, S., Joskowicz, L., Sabuncu, M.R., Unal, G., Wells, W. (eds.) MICCAI 2016. LNCS, vol. 9901, pp. 230–238. Springer, Cham (2016). https://doi.org/10.1007/978-3-319-46723-8_27

    Chapter  Google Scholar 

Download references

Acknowledgements

This research was supported by NIH U01HD087211, NIH R01EB01733 and NIH NIBIB NAC P41EB015902.

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Junshen Xu .

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 2019 Springer Nature Switzerland AG

About this paper

Check for updates. Verify currency and authenticity via CrossMark

Cite this paper

Xu, J. et al. (2019). Fetal Pose Estimation in Volumetric MRI Using a 3D Convolution Neural Network. In: Shen, D., et al. Medical Image Computing and Computer Assisted Intervention – MICCAI 2019. MICCAI 2019. Lecture Notes in Computer Science(), vol 11767. Springer, Cham. https://doi.org/10.1007/978-3-030-32251-9_44

Download citation

  • DOI: https://doi.org/10.1007/978-3-030-32251-9_44

  • Published:

  • Publisher Name: Springer, Cham

  • Print ISBN: 978-3-030-32250-2

  • Online ISBN: 978-3-030-32251-9

  • eBook Packages: Computer ScienceComputer Science (R0)

Publish with us

Policies and ethics