Skip to main content

Vertebrae Detection and Labelling in Lumbar MR Images

  • Conference paper
  • First Online:
Computational Methods and Clinical Applications for Spine Imaging

Abstract

We describe a method to automatically detect and label the vertebrae in human lumbar spine MRI scans. Our contribution is to show that marrying two strong algorithms (the DPM object detector of Felzenszwalb et al. [1], and inference using dynamic programming on chains) together with appropriate modelling, results in a simple, computationally cheap procedure, that achieves state-of-the-art performance. The training of the algorithm is principled, and heuristics are not required. The method is evaluated quantitatively on a dataset of 371 MRI scans, and it is shown that the method copes with pathologies such as scoliosis, joined vertebrae, deformed vertebrae and disks, and imaging artifacts. We also demonstrate that the same method is applicable (without retraining) to CT scans.

Funded by ESPRC.

Financial support was provided by ERC grant VisRec no. 228180.

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Chapter
USD 29.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD 39.99
Price excludes VAT (USA)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD 54.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info
Hardcover Book
USD 54.99
Price excludes VAT (USA)
  • Durable hardcover edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

References

  1. Felzenszwalb, P., Mcallester, D., Ramanan, D.: A discriminatively trained, multiscale, deformable part model. In: Proceedings of CVPR (2008)

    Google Scholar 

  2. Pfirmann, C.W.A., Metzdorf, A., Zanetti, M., Hodler, J., Boos, N.: Magnetic resonance classification of lumbar intervertebral disc degeneration. Spine 26(17), 1873–1878 (2001)

    Article  Google Scholar 

  3. Fardon, D.F., Milette, P.C.: Nomenclature and classification of lumbar disc pathology. Spine 26(5), E93–E113 (2001)

    Article  Google Scholar 

  4. Alomari, R.S., Corso, J.J., Chaudhary, V., Dhillon, G.: Desiccation diagnosis in lumbar discs from clinical mri with a probabilistic model. In: IEEE International Symposium on Biomedical Imaging: From Nano to Macro. ISBI ’09, pp. 546–549 (2009)

    Google Scholar 

  5. Alomari, R.S., Corso, J.J., Chaudhary, V., Dhillon, G.: Computer-aided diagnosis of lumbar disc pathology from clinical lower spine MRI. Int. J. Comput. Assist. Radiol. Surg. 5(3), 287–293 (2010)

    Article  Google Scholar 

  6. Ghosh, S., Alomari, R.S., Chaudhary, V., Dhillon, G.: Computer-aided diagnosis for lumbar mri using heterogeneous classifiers. In: IEEE International Symposium on Biomedical Imaging: From Nano to Macro (2011)

    Google Scholar 

  7. Michopoulou, S., Costaridou, L., Vlychou, M., Speller, R., Todd-Pokropek, A.: Texture-based quantification of lumbar intervertebral disc degeneration from conventional t2-weighted MRI. Acta Radiol. 52(1), 91–98 (2011)

    Article  Google Scholar 

  8. Ghosh, S., Alomari, R.S., Chaudhary, V., Dhillon, G.: Automatic lumbar vertebra segmentation from clinical ct for wedge compression fracture diagnosis. In: SPIE 7963, Medical Imaging 2011: Computer-Aided Diagnosis (2011)

    Google Scholar 

  9. Wels, M., Kelm, B.M., Tsymbal, A., Hammon, M., Soza, G., Sühling, M., Cavallaro, A., Comaniciu, D.: Multi-stage osteolytic spinal bone lesion detection from ct data with internal sensitivity control. In: Proceedings of SPIE 8315, Medical Imaging 2012: Computer-Aided Diagnosis (2012)

    Google Scholar 

  10. Dalal, N., Triggs, B.: Histogram of oriented gradients for human detection. In: Proceedings of CVPR, vol. 2, pp. 886–893 (2005)

    Google Scholar 

  11. Fischler, M., Elschlager, R.: The representation and matching of pictorial structures. IEEE Trans. Comput. c–22(1), 67–92 (1973)

    Article  Google Scholar 

  12. Felzenszwalb, P., Huttenlocher, D.: Pictorial structures for object recognition. IJCV 61(1), 55–79 (2005)

    Article  Google Scholar 

  13. Oktay, A.B., Akgul, Y.S.: Simultaneous localization of lumbar vertebrae and intervertebral discs with SVM based MRF. IEEE Trans. Med. Imaging 1179–1182 (2013)

    Google Scholar 

  14. Ghosh, S., Malgireddy, M.R., Chaudhary, V., Dhillon, G.: A new approach to automatic disc localization in clinical lumbar MRI: Combining machine learning with heuristics. In: International Symposium on Biomedical Imaging (2012)

    Google Scholar 

  15. Zhan, Y., Maneesh, D., Harder, M., Zhou, X.S.: Robust MR spine detection using hierarchical learning and local articulated model. Med. Image Comput. Comput.-Assist. Interv.—MICCAI—LNCS 7510, 141–148 (2012)

    Google Scholar 

  16. Chwialkowski, M.P., Shile, P.E., Pfeifer, D., Parkey, R.W., Peshock, R.M.: Automated localization and identification of lower spinal anatomy in magnetic resonance images. Comput. Biomed. Res. 24(2) (1989)

    Google Scholar 

  17. Aslan, M.S., Ali, A., Rara, H., Farag, A.A.: An automated vertebra identification and segmentation in CT images. In: Proceedings of IEEE 17th International Conference on Image Processing (2010)

    Google Scholar 

  18. Glocker, B., Feulner, J., Criminisi, A., Haynor, D.R., Konukoglu, E.: Automatic localization and identification of vertebrae in arbitrary field-of-view ct scans. In: Medical Image Computing and Computer-Assisted Intervention (2012)

    Google Scholar 

  19. Pekar, V., Bystrov, D., Heese, H.S., Dries, S.P.M., Schmidt, S., Grewer, R., Harder, C.J.D., Bergmans, R.C., Simonetti, A.W., Muiswinkel, A.M.V.: Automated planning of scan geometries in spine mri scans. In: Medical Image Computing and Computer-Assisted Intervention, vol. 10, pp. 601–608 (2007)

    Google Scholar 

  20. Alomari, R.S., Corso, J.J., Chaudhary, V.: Labeling of lumbar discs using both pixel- and object-level features with a two-level probabilistic model. IEEE Trans. Med. Imaging 30(1), 1–10 (2011)

    Article  Google Scholar 

  21. Kelm, B.M., Wels, M., Zhou, K.S., Seifert, S., Suehling, M., Zheng, Y., Comaniciu, D.: Spine detection in ct and mr using iterated marginal space learning. Med. Image Anal (2012)

    Google Scholar 

  22. Klinder, T., Ostermann, J., Ehm, M., Franz, A., Kneser, R., Lorenz, C.: Automated model-based vertebra detection, identification, and segmentation in CT images. Med. Image Anal. 13(3), 471–482 (2009)

    Article  Google Scholar 

  23. Felzenszwalb, P.F., Grishick, R.B., McAllester, D., Ramanan, D.: Object detection with discriminatively trained part based models. IEEE PAMI 32(9), 1627–1645 (2010)

    Article  Google Scholar 

  24. Potesil, V., Lootus, M., El-Labban, A., Kadir, T.: Landmark localization in images with variable field of view. In: International Symposium on Biomedical Imaging (2013)

    Google Scholar 

Download references

Acknowledgments

Acknowledgements for the dataset.

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Meelis Lootus .

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 2014 Springer International Publishing Switzerland

About this paper

Cite this paper

Lootus, M., Kadir, T., Zisserman, A. (2014). Vertebrae Detection and Labelling in Lumbar MR Images. In: Yao, J., Klinder, T., Li, S. (eds) Computational Methods and Clinical Applications for Spine Imaging. Lecture Notes in Computational Vision and Biomechanics, vol 17. Springer, Cham. https://doi.org/10.1007/978-3-319-07269-2_19

Download citation

  • DOI: https://doi.org/10.1007/978-3-319-07269-2_19

  • Published:

  • Publisher Name: Springer, Cham

  • Print ISBN: 978-3-319-07268-5

  • Online ISBN: 978-3-319-07269-2

  • eBook Packages: EngineeringEngineering (R0)

Publish with us

Policies and ethics