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Sequence of Mammalian Mitochondrial DNA

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Biological Chemistry of Organelle Formation

Abstract

The human mitochondrial (mt) genome consists of a closed circular duplex DNA approximately 10 x 106 daltons and has been the most intensely studied animal mt genetic system. The positions of the origin of replication of H strand synthesis (Crews et al. 1979), the 12S and 16S ribosomal RNA genes (Robberson et al. 1972) and 19 tRNA genes (Angerer et al. 1976) have been located on the genetic map shown in Figure 1. A number of discrete products of mitochondrial protein synthesis have been demonstrated and three of them identified as subunits 1, 2 and 3 of the cytochrome oxidase complex (Hare et al. 1980). In comparison with other mito-systems, genes for up to four subunits of the ATPase complex, one of the cytochrome bc1 complex and possibly for a ribosomal protein would be expected to be present (see review by Borst 1977). Both strands are thought to be completely transcribed symmetrically from a point near the origin of the H strand synthesis (Aloni and Attardi 1971; Murphy et al. 1975). These transcripts are then processed to give the rRNAs, the tRNAs and a number of polyadenylated but not capped mRNAs (Attardi et al. 1979). Both the L and H strands have been shown to be coding with the L strand containing the sense sequence of the rRNA genes, most of the tRNA genes and most of the stable polyadenylated mRNAs.

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References

  • Aloni Y, Attardi G (1971) Symmetrical in vivo transcription of mitochondrial DNA in HeLa cells. Proc Natl Acad Sci USA 68: 1757–1761

    Article  PubMed  CAS  Google Scholar 

  • Angerer L, Davidson N, Murphy W, Lynch D, Attardi G (1976) An electron microscope study of the relative positions of the 4S and ribosomal RNA genes in HeLa cell mitochondrial DNA. Cell 9: 81–90

    Article  PubMed  CAS  Google Scholar 

  • Attardi G, Cantatore P, Ching E, Crews S, Gelfland R, Merkel C, Ojala D (1979) The organisation of the genes in the human mitochondrial genome and their mode of transcription. In: Cummings D, Borst P, Dawid J, Weissman S, Fox CF (eds) Proc ICN-UCLA Symp on Extrachromosomal DNA. Academic Press, New York, pp 443–469

    Google Scholar 

  • Aujame L, Freeman KB (1979) Mammalian mitochondrial transfer RNAs: chromatographic properties, size and origin. Nucleic Acids Res 6: 455–469

    Article  PubMed  CAS  Google Scholar 

  • Barrell BG, Bankier AT, Drouin J (1979) A different genetic code in human mitochondria. Nature (London) 282: 189–194

    Article  CAS  Google Scholar 

  • Barrell BG, Anderson S, Bankier AT, de Bruijn MHL, Chen E, Coulson AR, Drouin J, Eperon IC, Nierlich DP, Roe BA, Sanger F, Schreier PH, Smith AJH, Staden R, Young IG (1980) Different pattern of codon redognition by mammalian mitochondrial tRNAs. Proc Natl Acad Sci USA 77: 3164–3166

    Article  PubMed  CAS  Google Scholar 

  • Bonitz SG, Berlani R, Coruzzi G, Li M, Nobrega FG, Nobrega MP, Thalenfeld BE, Tzagoloff A, Macino G (1980) Assembly of the mitochondrial membrane system: Decoding rules of yeast mitochondria. Proc Natl Acad Sci USA 77: 3167–3170

    Article  PubMed  CAS  Google Scholar 

  • Borst P (1977) Structure and function of mitochondrial DNA. TIBS 2: 31–34

    CAS  Google Scholar 

  • Crews S, Ojala D, Posakony J, Nishiguchi J, Attardi G (1979) Nucleotide sequence of a region of human mitochondrial DNA containing the precisely identified origin of replication. Nature (London) 277: 192–198

    Article  CAS  Google Scholar 

  • Crick FHC (1966) Codon — Anticodon pairing: The wobble hypothesis. J Mol Biol 19: 548–555

    Article  PubMed  CAS  Google Scholar 

  • Drouin J (1980) Human mitochondrial DNA: Cloning in E. coli. J Mol Biol 140: 15–34

    CAS  Google Scholar 

  • Dubin DT, Jones TH, Cleaves GR (1974) An unmethylated “3S” RNA in hamster mitochondria: A 5S RNA equivalent? Biochem Biophys Res Commun 56: 401–406

    Article  PubMed  CAS  Google Scholar 

  • Eperon IC, Anderson S, Nierlich DP (1980) The distinctive sequence of human mitochondrial ribosomal RNA genes. Nature (London) in press

    Google Scholar 

  • Fox TD (1979) Five TGA stop codons occur within the translated sequence of the yeast mitochondrial gene for cytochrome C oxidase subunit II. Proc Natl Acad Sci USA 76: 6534–6538

    Article  PubMed  CAS  Google Scholar 

  • Gronenborn B, Messing J (1978) Methylation of single-stranded DNA in vitro introduces new restriction endonuclease cleavage sites. Nature (London) 272: 375–377

    Article  CAS  Google Scholar 

  • Hare JF, Ching E, Attardi G (1980) Isolation, subunit composition, and site of synthesis of human cytochrome c oxidase. Biochemistry 19: 2023–2030

    Article  PubMed  CAS  Google Scholar 

  • Heckman JE, Sarnoff J, Alzner-De Weerd B, Yyn S, RajBhandary UL (1980) Novel features in the genetic code and codon reading patterns in Neurospora crassa mitochondria based on sequence of six mitochondrial tRNAs. Proc Natl Acad Sci USA 77: 3159–3163

    Article  PubMed  CAS  Google Scholar 

  • Hensgens LAM, Grivell LA, Borst P, Bos JL (1979) Nucleotide sequence of the mitochondrial structural gene for subunit 9 of yeast ATPase complex. Proc Natl Acad Sci USA 76: 1663–1667

    Article  PubMed  CAS  Google Scholar 

  • Kim SH, Suddath FL, Quigley GJ, McPherson A, Sussman JL, Wang AHJ, Seeman NC, Rich A (1974) Science 185: 435–440

    Article  PubMed  CAS  Google Scholar 

  • Kozak M (1978) How do eucaryotic ribosomes select initiation regions in messenger RNA. Cell 15: 1109–1123

    Article  PubMed  CAS  Google Scholar 

  • Ladner JE, Jack A, Robertus JD, Brown RS, Rhodes D, Clark BFC, Klug A (1975) Structure of yeast phenylalanine transfer RNA at 2.5 R resolution. Proc Natl Acad Sci USA 72: 4414–4418

    Article  PubMed  CAS  Google Scholar 

  • Lagerkvist U (1978) “Two out of three”: An alternative method for codon reading. Proc Natl Acad Sci USA 75:1759–1762

    Article  PubMed  CAS  Google Scholar 

  • Li M, Tzagoloff A (1979) Assembly of the mitochondrial membrane system: Sequences of yeast mitochondrial valine and an unusual threonine tRNA gene. Cell 18: 47–53

    Article  PubMed  CAS  Google Scholar 

  • Macino G, Tzagoloff A (1979) Assembly of the mitochondrial membrane system: Partial sequence of a mitochondrial ATPase gene in Saccharomyces cerevisiae. Proc Natl Acad Sci USA 76: 131–135

    Article  PubMed  CAS  Google Scholar 

  • Macino G, Coruzzi G, Nobrega FG, Li M, Tzagoloff A (1979) Use of the UGA terminator as a tryptophan codon in yeast mitochondria. Proc Natl Acad Sci USA 76: 3784–3785

    Article  PubMed  CAS  Google Scholar 

  • Martens PA, Clayton DA (1979) Mechanism of mitochondrial DNA replication in mouse L-cells: Localization and sequence of the light-strand origin of replication. J Mol Biol 135: 327–351

    Article  PubMed  CAS  Google Scholar 

  • Murphy W, Attardi B, Tu C, Attardi G (1975) Evidence for complete symmetrical transcription in vivo of mitochondrial DNA in HeLa cells. J Mol Biol 99: 809–814

    Article  PubMed  CAS  Google Scholar 

  • Ojala D, Attardi G (1977) A detailed physical map of HeLa cell mitochondrial DNA and its alignment with the positions of known genetic markers. Plasmid 1: 78–105

    Article  PubMed  CAS  Google Scholar 

  • Ojala D, Montoya J, Attardi G (1980) The putative mRNA for subunit II of cytochromec oxidase in human mitochondria starts directly at the translation initiator codon. Submitted to Nature (London)

    Google Scholar 

  • Robberson D, Aloni Y, Attardi G, Davidson N (1972) Expression of the mitochondrial genome in HeLa cells. VIII The relative position of ribosomal RNA genes in mitochondrial DNA. J Mol Biol 64: 313–317

    Article  PubMed  CAS  Google Scholar 

  • Sanger F, Coulson AR (1978) The use of thin acrylamide gels for DNA sequencing. FEBS Lett 87: 107–110

    Article  PubMed  CAS  Google Scholar 

  • Sanger F, Nicklen S, Coulson AR (1977) DNA sequencing with chain-terminating inhibitors. Proc Natl Acad Sci USA 74: 5463–5467

    Article  PubMed  CAS  Google Scholar 

  • Sanger F, Coulson AR, Barrell BG, Smith AJH, Roe BA (1980) Cloning in single-stranded bacteriophage as an aid to rapid DNA sequencing. J Mol Biol 143: 161–178

    Article  PubMed  CAS  Google Scholar 

  • Schreier PH, Cortese R (1979) A fast and simple method for sequencing DNA cloned in the single-stranded bacteriophage M13. J Mol Biol 129: 169–172

    Article  PubMed  CAS  Google Scholar 

  • Sebald W, Wachter E (1978) In: Schäfer G, Klingenberger M (eds) 29th Mosbacher Colloq. Energy conservation in biological membranes. Springer, Berlin Heidelberg New York, p 228

    Google Scholar 

  • Smith AJH (1979) The use of exonuclease III for preparing single-stranded DNA for use as a template in the chain terminator sequencing method. Nucleic Acids Res 6: 831–848

    Article  PubMed  CAS  Google Scholar 

  • Sprinzl M, Grüter F, Gauss DH (1979) Compilation of tRNA sequences. Nucleic Acids Res Spec Suppl 1–19

    Google Scholar 

  • Staden R (1977) Sequence data handling by computer. Nucleic Acids Res 4: 4037–4051

    Article  PubMed  CAS  Google Scholar 

  • Staden R (1978) Further procedures for sequence analysis by computer. Nucleic Acids Res 5: 1013–1015

    Article  PubMed  CAS  Google Scholar 

  • Staden R (1979) A strategy of DNA sequencing employing computer programs. Nucleic Acids Res 6: 2601–1610

    Article  PubMed  CAS  Google Scholar 

  • Staden R (1980a) A computer program to search for tRNA genes. Nucleic Acids Res 8: 817–825

    Article  PubMed  CAS  Google Scholar 

  • Staden R (1980b) A new computer method for the storage and manipulation of DNA gel reading data. Nucleic Acids Res in press

    Google Scholar 

  • Steffens GJ, Buse G (1979) Studies on cytochrome c oxidase, IV Primary structure and function of subunit II. Hoppe-Seyler’s Z Physiol Chem 360: 613–619

    PubMed  CAS  Google Scholar 

  • Walz A, Pirrotta V, Ineichen K (1976) A repressor regulates the switch between Pr and Prm promoters. Nature (London) 262: 665–669

    Article  CAS  Google Scholar 

  • Wrede P, Woo NH, Rich A (1979) Initiator tRNAS have a unique anticodon loop conformation. Proc Natl Acad Sci USA 76: 3289–3293

    Article  PubMed  CAS  Google Scholar 

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© 1980 Springer-Verlag Berlin Heidelberg

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Barrell, B.G. et al. (1980). Sequence of Mammalian Mitochondrial DNA. In: Bücher, T., Sebald, W., Weiss, H. (eds) Biological Chemistry of Organelle Formation. Colloquium der Gesellschaft für Biologische Chemie, vol 31. Springer, Berlin, Heidelberg. https://doi.org/10.1007/978-3-642-81557-7_2

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  • DOI: https://doi.org/10.1007/978-3-642-81557-7_2

  • Publisher Name: Springer, Berlin, Heidelberg

  • Print ISBN: 978-3-642-81559-1

  • Online ISBN: 978-3-642-81557-7

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