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Omics (Genomics, Proteomics, Metabolomics, Etc.) Tools to Study the Environmental Microbiome and Bioremediation

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Waste to Energy: Prospects and Applications

Abstract

The term microbiome refers to the collection of microorganisms or their hereditary material from a specific biological system. Microbiomes are widespread and inescapable and contemporary in the soil, water, air, and in/on other living beings. Changes in the microbiome can conflict the wellbeing of the natural specialty where they occupy. In order to collect more comprehensive knowledge about these microbial communities, various measures have been pursued. Exploration of natural microbiome can be of a specific interest for revelation of novel creatures or novel gene or new microbial metabolites. Technologies that explore the roles, relationships, or characteristics of biomolecules of cells, such as DNA, RNA, proteins, or small metabolites, named by conjoin suffix—“omics”, as in genomics, transcriptomics, proteomics, or metabolomics, respectively. Genomics and transcriptomics research has elevated because of advances in microarray technology. Fast advancement in “omics”—metagenomics, metatranscriptomics, metaproteomics, metabolomics leading to a greater understanding of the patterns, processes, and mechanisms governing the structure and dynamics of microbiomes. Albeit each “omics” technology gives a valuable data independently yet when they use in consolidated structure, they delineate an increasingly extensive picture. The omics technologies have critical commitment to comprehend ecological bioremediation mechanisms. Omics advancements help in discovering of genes involved in biodegradation, to find out the functions of missing genes and to explore the metabolic pathways of bioremediation. Genomics has been used to study pure cultures with regard to bioremediation. Proteomics-based examinations have been helpful in elaborating changes in the structure and function of proteins as well as in the identification of key proteins associated with the physiological reaction of microorganisms when presented to anthropogenic contaminations. Transcriptomic or metatranscriptomics apparatuses are utilized to increase utilitarian bits of knowledge into the exercises of ecological microbial networks by considering their mRNA transcriptional profiles.

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Authors and Affiliations

  1. Department of Microbiology, College of Basic Sciences & Humanities, Dr. Rajendra Prasad Central Agricultural University, Samastipur, Bihar, India

    Devendra Singh, Geeta Kumari & Manindra Nath Jha

  2. Division of Plant Improvement and Pest Management, ICAR-Central Arid Zone Research Institute, Jodhpur, Rajasthan, India

    Devendra Singh

  3. Agricultural Research Station, Agriculture University, Jodhpur, Rajasthan, India

    Neelam Geat & Motilal Mehriya

  4. ICAR-National Bureau of Agriculturally Important Microorganisms, Mau Nath Bhanjan, Uttar Pradesh, India

    Mahendra Vikram Singh Rajawat

  5. Division of Microbiology, ICAR-Indian Agricultural Research Institute, New Delhi, India

    Radha Prasanna

  6. Department of Plant Breeding and Genetics, Dr. Rajendra Prasad Central Agricultural University, Samastipur, Bihar, India

    Ashutosh Kumar

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  1. Department of Biotechnology Engineering, Institute of Engineering & Technology, Bundelkhand University, Jhansi, Uttar Pradesh, India

    Brijendra Kumar Kashyap

  2. Department of Food Quality & Safety, Institute for Post-harvest and Food Sciences, The Volcani Center, Agricultural Research Organization, Rishon LeZion, Israel

    Manoj Kumar Solanki

  3. Division of Biotechnology, Defence Research and Development Establishment (DRDE), Defence Research and Development Organization (DRDO), Gwalior, Madhya Pradesh, India

    Dev Vrat Kamboj

  4. Department of Biological Sciences, Rani Durgavati University, Jabalpur, India

    Akhilesh Kumar Pandey

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Singh, D. et al. (2020). Omics (Genomics, Proteomics, Metabolomics, Etc.) Tools to Study the Environmental Microbiome and Bioremediation. In: Kashyap, B.K., Solanki, M.K., Kamboj, D.V., Pandey, A.K. (eds) Waste to Energy: Prospects and Applications. Springer, Singapore. https://doi.org/10.1007/978-981-33-4347-4_10

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