Abstract
Recognition of rotaviruses as a major aetiological agent of acute gastroenteritis in infants and young children has prompted the investigation of their epidemiology by molecular techniques. Genome analysis by electrophoretic separation of the RNA segments has been widely used to distinguish virus isolates and to monitor patterns of virus transmission. Examination of virus isolates from different epidemics has clearly demonstrated the existance of extensive genomic variation in viruses circulating in large communities; with the co-circulation of a number of viruses of differing electrophoretype. Preliminary studies using the more advanced techniques of oligonucleotide mapping and hybridization analysis have suggested that variation among the viruses may occur by processes involving both ≪ drift ≫ and ≪ shift ≫. Because of their ease and specificity the new hybridization analysis techniques should greatly facilitate both the rapid diagnosis of rotavirus infections, and the solution of many epidemiological and evolutionary questions. Continued and expanded use of molecular techniques for the study of the epidemiology of rotavirus infections will be required to manage future outbreaks and to effect long term control measures.
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AlbertM.J., BishopR.F., ShannF.A. (1983): Epidemiology of rotavirus diarrhea in the highlands of Papua, New Guinea, in 1979, as revealed by electrophoresis of genome RNA. - J. Clin. Microbiol. 17, 162–164.
AlbertM.J., SoenartoY., BishopR.F. (1982): Epidemiology of rotavirus diarrhea in Yogyakarta, Indonesia, as revealed by electrophoresis of genome RNA. - J. Clin. Microbiol. 16, 731–733.
BastardoJ.W., McKimm-BreschkinJ.L., SonzaS., MercerL.D., HolmesI.H. (1981): Preparation and characterization of antisera to electrophoretically purified SA11 virus polypeptides. - Infect. Immun. 34, 641–647.
BeardsG.M. (1982): A method for the purification of rotaviruses and adenoviruses from faeces. - J. Virol. Methods 4, 343–352.
BeardsG.M. (1982): Polymorphism of genomic RNAs within rotavirus serotypes and subgroups. -Arch. Virol. 74, 65–70.
BeardsG.M., FlewettT.H. (1984): Serological characterization of human rotaviruses propogated in cell cultures. - Arch. Virol. 80, 231–237.
BirchC.J., LewisF.A., KennethM.L., HomolaM., PritchardH., GustI.D. (1977): A study of the prevalence of rotavirus infection in children with gastroenteritis admitted to an infectious diseases hospital. - J. Med. Virol. 1, 69–77.
BohlE.H., SaifL.J., TheilK.W., AgnesA.G., CrossR.F. (1982): Porcine pararotavirus: detection, differentiation from rotavirus, and pathogenesis in gnotobiotic pigs. - J. Clin. Microbiol. 15, 312–319.
BothG.W., MattickJ.S., BellamyA.R. (1983): Serotype-specific glycoprotein of simian 11 rotavirus: coding assignment and gene sequence. - Proc. Natl. Acad. Sci. USA 80, 3091–3095.
BothG.W., MattickJ., SiegmanL., AtkinsonP.H., WeissS., BellamyA.R., StreetJ.E., MetcalfP. (1983): Cloning of SA11 rotavirus genes: gene structure and polypeptide assignment for the typespecific glycoprotein. In: Double-stranded RNA viruses. Elsevier Biomedical Press, New York.
BrandtC.D., KimH.W., RodriguezW.J., ArrobioJ.O., JeffriesB.C., StallingsE.P., LewisC., MilesA.J., ChanockR.M., KapikianA.Z., ParrottR.H. (1983): Pediatric viral gastroenteritis during eight years of study. - J. Clin. Microbiol. 18, 71–78.
BrandtC.D., KimH.W., YolkenR.H., KapikianA.Z., ArrobioJ.O., RodriguezW.J., WyattR.G., ChanockR.M., ParrottR.H. (1979): Comparative epidemiology of two rotavirus serotypes and other viral agents associated with pediatric gastroenteritis.- Amer. J. Epidemiol. 110, 243–254.
BridgerJ.C. (1980): Detection by electron microscopy of caliciviruses, astroviruses and rotavirus-like particles in the faeces of piglets with diarrhoea.- Vet. Rec. 107, 532–533.
BridgerJ.C., ClarkeI.N., McCraeM.A. (1982): Characterization of an antigenically distinct porcine rotavirus. - Infect. Immun. 32, 1058–1062.
BrigatiD.J., MyersonD., LearyJ.J., SpalholzB., TravisS.Z., FongC.K.Y., HsinngG.D., WardD.C. (1983): Detection of viral genomes in cultured cells and paraffin-embedded tissue sections using biotin-labelled hybridization probes. - Virol. 126, 32–50.
BrownE.G., NibertM.L., FieldsB.N. (1983): The L2 gene of reovirus serotype 3 controls the capacity to interfere, accumulate deletions and establish persistent infection. In: Double-stranded RNA viruses. Elsevier Biomedical Press New York.
CameronD.J.S., BishopR.F., VeenstraA.A., BarnesG.L. (1978): Noncultivable viruses and neonatal diarrhea: fifteen-month survey in a newborn special care unit. - J. Clin. Microbiol. 8, 93–98.
CashP. (1982): Human rotavirus RNA prepared from stool samples by a simple procedure suitable for the determination of elect ropherotypes.- J. Virol. Methods 4, 107–115.
ChanockS.J., WenskeE.A., FieldsB.N. (1983): Human rotaviruses and genome RNA. - J. Infect. Dis. 148, 49–50.
ClarkeI.N., McCraeM.A. (1981): A rapid and sensitive method for analysing the genome profiles of field isolates of rotavirus. - J. Virol. Methods 2, 203–209.
ClarkeI.N., McCraeM.A. (1981): A sensitive method for the production of diagnostic fingerprints of the genome segments of field isolates of rotavirus.- J. Virol. Methods 3, 261–269.
ClarkeI.N., McCraeM.A. (1983): The molecular biology of rotaviruses. VI RNA species-specific terminal conservation in rotaviruses. - J. Gen. Virol. 64, 1877–1884.
CohenJ., MasonB.B., EstesM.K. (1983): Molecular cloning of the simian rotavirus SA11. In: Double-stranded RNA viruses. Elsevier Biomedical Press, New York.
DavidsonG.P., BishopR.F., TownleyR.R.W., HolmesI.H., RuckB.J. (1975): Importance of a new virus in acute sporadic enteritis in children. -Lancet 1, 242–246.
DimitrovD.H., EstesM.K., RangelovaS.M., ShindarovL.M., MelnickJ.L., GrahamD.Y. (1983): Detection of antigenically, distinct rotaviruses from infants. - Infect. Immun. 41, 523–526.
DimitrovD.H., GrahamD.Y., LopezJ., MuchinikG., ValascoG., StenbackW.A., EstesM.K. (1984): RNA electropherotypes of human rotaviruses from North and South America. - Bull. Wld. Hlth. Org. 62, 321–329.
Dyall-SmithM.L., AzadA.A., HolmesI.H. (1983): Gene mapping of rotavirus double-stranded RNA segments by northern blot hybridization: application to segments 7, 8 and 9. - J. Virol. 46, 317–320.
Dyall-SmithM.L., HolmesI.H. (1984): Sequence homology between human and animal rotavirus serotype-specific glycoproteins. - Nucleic Acids Res. 12, 3973–3982.
EllemanT.C., HyoneP.A., Dyall-SmithM.L., HolmesI.H., AzadA.A. (1983): Nucleotide sequence of the gene encoding the serotype-specific glycoprotein of UK bovine rotavirus. - Nucleic Acids Res. 11, 4689–4701.
EnglebergN.C., HolburtE.N., BarretT.J., GaryG.W. Jr., FrujilloM.H., FeldmanR.A., HughesJ.M. (1982): Epidemiology of diarrhea due to rotavirus on an Indian reservation: risk factors in the home invironment. - J. Infect. Dis. 145, 894–898.
EspejoR.T., AvendanoL.F., MunozO., RomeroP., EternodJ.G., LopezS., MoncayaJ. (1980): Comparison of human rotaviruses isolated in Mexico City and in Santiago, Chile, by electrophoretic migration of their double-stranded ribonucleic acid genome segments. - Infect. Immun. 30, 342–348.
EspejoR.T., CalderonE., GonzalesN. (1977): Distinct reovirus-like agents associated with acute infantile gastroenteritis. - J. Clin. Microbiol. 6, 502–506.
EspejoR.T., CalderonE., GonzalesN., SalomonA., MarluscelliA., RomeroP. (1979): Presence of two distinct types of rotavirus in infants and young children hospitalized with acute gastroenteritis in Mexico City, 1977. - J. Infect. Dis. 139, 474–477.
EspejoR.T., MunozO., SerafinF., RomeroP. (1980): Shift in the prevalent human rotavirus detected by ribonucleic acid segment differences.- Infect. Immun. 27, 351–354.
EspejoR.T., PuertoF. (1984): Shifts in the electrophoretic pattern on the RNA genome of rotaviruses under different electrophoretic conditions. -J. Virol. Methods 8, 293–299.
EstesM.K., GrahamD.Y., DimitrovD.H. (1984): The molecular epidemiology of rotavirus gastroenteritis.- Prog. med. Virol. 29, 1–22.
FloresJ., BoeggemanE., PurcellR.H., SerenoM., PerezI., WhiteL., WyattR.G., ChanockR.H., KapikianA.Z. (1983): A dot hybridisation assay for detection of rotavirus. - Lancet i, 555–558.
FloresJ., GreenbergH.B., MyslinskiJ., KalicaA.R., WyattR.G., KapikianA.Z., ChanockR.M. (1982): Use of transcription probes for genotyping rotavirus reassortants. - Virol. 121, 288–295.
FloresJ., PerezI., WhiteL., PerezM., KalicaA.R., MarquinaR., WyattR.G., KapikianA.Z., ChanockR.M. (1982): Genetic relatedness among human rotaviruses as determined by RNA hybridization.- Infect. Immun. 37, 648–655.
FloresJ., SerenoM., LaiC.J., BoeggemanE., PerezI., PurcellR., KalicaA., GreenbergH., WyattR., HansenJ., KapikianA., ChanockR. (1983): Use of single-stranded rotavirus RNA transcripts for the diagnosis of rotavirus infection, the study of genetic diversity among rotaviruses, and the molecular cloning of rotavirus genes. In: Double-stranded RNA viruses. Elsevier Biomedical Press, New York.
FolletE.A.C., DesselbergerU. (1983): Cocirculation of different rotavirus strains in a local outbreak of infantile gastroenteritis. Monitoring by rapid and sensitive nucleic acid analysis and by oligonucleotide mapping. In: Double-stranded RNA viruses. Elsevier Biomedical Press, New York.
FolletE.A.C., DesselbergerU. (1983): Cocirculation of different rotavirus strains in a local outbreak of infantile gastroenteritis: monitoring by rapid and sensitive nucleic acid analysis. - J. Med. Virol. 11, 39–52.
FolletE.A.C., SandersR.C., BeardsG.M., HundleyF., DesselbergerU. (1984): Molecular epidemiology of human rotaviruses. Analysis of outbreaks of acute gastroenteritis in Glasgow and the West of Scotland 1981/82 and 1982/83. - J. Hyg. Camb. 92, 209–222.
ForsterJ., PastorS. (1983): Epidemiology of human rotaviruses as determined by electrophoresis of genome RNA. - Eur. J. Clin. Microbiol. 2, 141–147.
FosterS.O., PalmerE.L., GaryG.W.Jr., MartinM.L., HerrmannK.L., BeasleyP., SampsonJ. (1980): Gastroenteritis due to rotavirus in an isolated Pacific island group: an epidemic of 3,439 cases. - J. Infect. Dis. 141, 32–39.
GreenbergH.B., KalicaA.R., WyattR.G., JonesR.W., KapikianA.Z., ChanockR.M. (1981): Rescue of noncultivable human rotaviruses by gene reassortment during mixed infection with ts mutants of a cultivable bovine rotavirus. - Proc. Natl. Acad. Sci. USA 78, 420–424.
GreenbergH., McAuliffeV., ValdesusoJ., WyattR., FloresJ., KalicaA., HoshinoY., SinghN. (1983): Serological analysis of the subgroup protein of rotavirus, using monoclonal antibodies. - Infect. Immun. 39, 91–99.
HerringA.J., InglisN.F., OjehC.K., SnodgrassD.R., MenziesJ.D. (1982): Rapid diagnosis of rotavirus infection by direct detection of viral nucleic acid in silver-stained polyacrylamide gels. J. Clin. Microbiol. 16, 473–477.
HollandJ., SpindlerK., HorodvskiF., GrabauE., NicholS., VandepolS. (1982): Rapid evolution of RNA genomes. - Sci. 215, 1577–1585.
HolmesI.H. (1979): Viral gastroenteritis. - Prog. Med. Virol, 25, 36.
HungT., ChenG., WangC., YaoH., FangZ., ChaoT., ChouZ., YeW., ChangX., DenS., LiongX., ChangW. (1984): Waterborne outbreak of rotavirus diarrhoea in adults in China caused by a novel rotavirus. - Lancet i, 1139–1142.
JoklikW.G. (1981): Structure and function of the reovirus genome. - Microbiol. Rev. 45, 483–501.
KalikaA.R., GreenbergH.B., EspejoR.T., FloresI., WyattR.G., KapikianA.Z., ChanockR.M. (1981): Distinctive ribonucleic acid patterns of human rotavirus subgroups 1 and 2. - Infect. Immun. 33, 958–961.
KalicaA.R., GreenbergH.B., WyattR.G., FloresJ., SerenoM.M., KapikianA.Z., ChanockR.M. (1981): Genes of human (strain Wa) and bovine (strain UK) rotaviruses that code for neutralisation and subgroup antigens. - Virol. 112, 385–390.
KantharidisP., Dyall-SmithM.L., HolmesI.H. (1983): Completion of the gene coding assignments of SA11 rotavirus gene products of segments 7, 8 and 9. - J. Virol. 48, 330–334.
KapikianA.Z., ClineW.L., GreenbergH.B., WyattR.G., KalicaA.R., BanksC.E., JamesH.D. Jr., FloresJ., ChanockR.M. (1981): Antigenic characterization of human and animal rotaviruses by immune adherence hemagglutination assay (IAHA): evidence for distinctness of IAHA and neutralisation antigens. - Infect. Immun. 33, 415–425.
KapikianA.Z., KimH.W., WyattR.G., ClineW.L., ArrobioJ.O., BrandtC.D., RodriguezW.J., SackD.A., ChanockR.M., ParrottR.H. (1976): Human reovirus-like agent as the major pathogen associated with ≪ winter ≫ gastroenteritis in hospitalized infants and young children. - New Engl. J. Med. 294, 965–972.
KapikianA.Z., WyattR.G., GreenbergH.B., KalicaA.R., KimH.W., BrandtC.D., RodriguezW.J., ParrottR.H., ChanockR.M. (1980): Approaches to immunization of infants and young children against gastroenteritis due to rotavirus. - Rev. Infect. Dis. 2, 459–469.
KonnoT., SuzukiH., ImaiA., KutsuzawaT., IshidaN., KatsushimaN., SakamotoM., KitaokaS., TsuboiR., AdachiM. (1978): A long term survey of rotavirus infection in Japanese children with acute gastroenteritis. - J. Infect. Dis. 138, 569–576.
KutsuzawaT., KonnoT., SuzukiH., EbinaT., IshidaN. (1982): Two distinct electrophoresic migration patterns of RNA segments of human rotaviruses prevalent in Japan in relation to their serotypes - Microbiol. Immunol. 26, 271–273.
LaemmliU.K. (1970): Cleavage of structural proteins during the assembly of the head of bacteriophage T4. - Nature, Lond. 227, 680–685.
LambertP., MarissensD., MarbehantP., ZissisG. (1983): Prevalence of subgroup 1, 2 and 3 rotaviruses in Belgian children suffering from acute diarrhoea. - J. Med. Virol. 11, 31–38.
LinharesA.C., PinheiroF.P., FreitasR.B., GabbayY.B., ShirleyJ.A., BeardsG.M. (1981): An outbreak of rotavirus diarrhea among a non-immune, isolated South American Indian Community. - Amer. J. Epidemiol. 113, 703–710.
LourencoM.H., NicolasJ.C., CohenJ., ScherrerR., BricoutF. (1981): Study of human rotavirus genome by electrophoresis: attempt of classification among strains isolated in France. - Ann. Virol. (Inst. Pasteur) 132E, 161–173.
MatsunoS., Hasegawa, KalicaA.R., KonoR. (1980): Isolation of a recombinant between simian and bovine rotaviruses. - J. Gen. Virol. 48, 253–256.
McCraeM.A., McCorauodaleJ.G. (1983): Structural and functional studies on the rotavirus genomic RNAs. In: Double-stranded RNA viruses. Elsevier Biomedical Press, New York.
McNultyM.S., AllanG.M., ToddD., McFerranJ.B., McCrackenR.M. (1981): Isolation from chickens of a rotavirus lacking the rotavirus group antigen. -J. Gen. Virol. 55, 405–413.
MoeK., HarperG.J. (1983): The effect of relative humidity and temperature on the survival of bovine rotavirus in aerosol. - Arch. Virol. 76, 211–216.
NicolasJ.C., CohenJ., FortierB., LourencoM.H., BricoutF. (1983): Isolation of a human pararotavirus. -Virol. 124, 181–184.
PaleseP. (1977): The genes of influenza virus. -Cell. 10, 1–10.
PaleseP., SchulmanJ.L. (1976): Differences in RNA patterns of influenza A virus. - J. Virol. 17, 299–313.
PedersonF.S., HaseltineW.A. (1980): In: Methods in enzymology 65. Academic Press, New York and London.
PedleyS., BridgerJ.C., BrownJ.F., McCraeM.A. (1983): Molecular characterisation of rotaviruses with distinct group antigens. - J. Gen. Virol. 64, 2093–2101.
PedleyS., BridgerJ.C., McCraeM.A. (1983): Molecular analysis of rotavirus isolates which lack the group antigen. In: Double-stranded RNA viruses. Elsevier Biomedical Press, New York.
PedleyS., HundleyF., ChrystieI., McCraeM.A., DesselbergerU. (1984): The genomes of rotaviruses isolated from chronically infected immunodeficient children. - J. Gen. Virol. 65, 1141–1150.
RixonF., TaylorP., DesselbergerU. (1984): Rotavirus RNA segments sized by electron microscopy. -J. Gen. Virol. 65, 233–239.
RodgerS.M., BishopR.F., BirchC., McLeanB., HolmesI.H. (1981): Molecular epidemiology of human rotaviruses in Melbourne, Australia, from 1973 to 1979, as determined by electrophoresis of genome ribonucleic acid. - J. Clin. Microbiol. 13, 272–278.
RodgerS.M., BishopR.F., HolmesI.H. (1982): Detection of a rotavirus-like agent associated with diarrhea in an infant. - J. Clin. Microbiol. 16, 724–726.
RodgerS.M., HolmesI.H. (1979): Comparison of the genomes of simian, bovine and human rotaviruses by electrophoresis and detection of genomic variation among bovine isolates. - J. Virol. 30, 839–846.
SabaraM., DeregtD., BabiukL.A., MisraV. (1982): Genetic heterogeneity within individual bovine rotavirus isolates. - J. Virol. 44, 813–822.
SaifL.J., BohlE.H., TheilK.W., CrossR.F., HouseJ.A. (1980): Rotavirus-like, calicivirus-like and 23 nm virus-like particles associated with diarrhoea in young pigs. - J. Clin. Microbiol. 12, 105–111.
SammonsD.W., AdamsL.D., NishizawaE.E. (1981): Ultrasensitive silver-based color staining of polypeptides in polyacrylamide gels. - Electrophoresis 2, 135–141.
SatoK., InabaY., MiuraY., TokuhisaS., MatumoM. (1982): Antigenic relationships between rotaviruses from different species as studied by neutralisation and immunofluorescence. - Arch. Virol. 73, 45–50.
SchnagelR.D., RodgerS.M., HolmesI.H. (1981): Variation in human rotavirus electropherotypes occurring between rotavirus gastroenteritis epidemics in central Australia. - Infect. Immun. 33, 17–21.
SchroederB.A., StreetJ.E., KalmakofJ., BellamyA.R. (1982): Sequence relationships between the genome segments of human and animal rotavirus strains. - J. Virol. 43, 379–385.
SnodgrassD.R., HerringA.J., CampbellI., InglisJ.M., HargreavesF.D. (1984): Comparison of atypical rotaviruses from calves, piglets, lambs and man. - J. Gen. Virol. 65, 909–914.
SonzaS., BreschinA.M., HolmesI.H. (1983): Derivation of neutralising monoclonal antibodies against rotaviruses. - J. Virol. 45, 1143–1146.
SpencerE.G., AvendanoL.F., GarciaB.I. (1983): Analysis of human rotavirus mixed electropherotypes. -Infect. Immun. 39, 569–574.
StreetJ.E., CroxsonM.C., ChaddertonW.F., BellamyA.R. (1982): Sequence diversity of human rotavirus strains investigated by northern blot hybridization analysis. - J. Virol. 43, 369–378.
TheilK.W., McCloskeyC.M., SaifL.J., RedmanD.R., BohlE.H., HancockD.D., KohlerE.M., MoorheadP.D. (1981): Rapid, simple method of preparing rotaviral double-stranded ribonucleic acid for analysis by polyacrylamide gel electrophoresis. -J. Clin. Microbial. 14, 273–280.
ThoulessM.E., BeardsG.M., FlewettT.H. (1982): Serotyping and subgrouping of rotavirus strains by the ELISA test. - Arch. Virol. 73, 219–230.
WalkerP.J., MansbridgeJ.N., GormanB.M. (1980): Genetic analysis of orbiviruses by using RNase T1 oligonucleotide fingerprints. - J. Virol. 34, 583–591.
WoodeG.N., BridgerJ.C., JonesJ.M., FlewettT.H., BrydenA.S., DaviesH.A., WhiteG.B.B. (1976): Morphological and antigenic relationships between viruses (rotaviruses) from acute gastroenteritis of children, calves, piglets, mice and foals. - Infect. Immun. 14, 804–810.
WyattR.G., GreenbergH.B., JamesW.D., PittmanA.L., KalicaA.R., FloresJ., ChanockR.M., KapikianA.Z. (1982): Definition of human rotavirus serotypes by plaque reduction assay. - Infect. Immun. 37, 110–115.
WyattR.G., JamesH.D., PittmanA.L., HoshinoY., GreenbergH.B., KalicaA.R., FloresJ., KapikianA.Z. (1983): Direct isolation in cell culture of human rotaviruses and their characterisation into four serotypes. - J. Clin. Microbial. 18, 310–317.
YolkenR.H., WyattR.G., ZissisG., BrandtC.D., RodriguezW.J., KimH.W., ParrottR.H., UrrutiaJ.J., MataL., GreenbergH.B., KapikianA.Z., ChanockR.M. (1978): Epidemiology of human rotavirus types 1 and 2 as studied by enzyme-linked immunosorbent assay. - New Engl. J. Med. 299, 1156–1161.
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Sanders, R.C. Molecular epidemiology of human rotavirus infections. Eur J Epidemiol 1, 19–32 (1985). https://doi.org/10.1007/BF00162308
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DOI: https://doi.org/10.1007/BF00162308