Skip to main content
Log in

The extraction of proteins from eukaryotic ribosomes and ribosomal subunits

  • Published:
Molecular and General Genetics MGG Aims and scope Submit manuscript

Summary

Proteins were extracted from rat liver ribosomes and ribosomal subunits: with 67% acetic acid (in the presence of 3.3 mM, 33 mM, or 67 mM Mg++); with 2 M LiCl in 4 M urea; with 0.25 N HCl; with 1% SDS; and after RNase digestion. The most efficient extraction and the best recovery were either with acetic acid in the presence of 33 mM or 67 mM Mg++, or with LiCl-urea. Protein extracted with acetic acid, LiCl-urea, or with HCl had little or no contamination with RNA. The ribosomal proteins were analyzed by two-dimensional polyacrylamide gel electrophoresis: the proteins extracted with acetic acid were the most soluble in the sample gel solution; their electrophoretograms displayed the maximum number of spots and the smallest number of derivatives or altered proteins. Preparations of protein extracted with SDS or RNase were relatively insoluble in the sample gel solution, and proteins extracted with HCl showed a large number of derivatives. All things considered, the most satisfactory method for the extraction of protein from eukaryotic ribosomes is with 67% acetic acid in the presence of 33 mM MgCl2.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Similar content being viewed by others

References

  • Craig, L. C.: Techniques for the study of peptides and proteins by dialysis and diffusion. Meth. Enzymol. 11, 870–905 (1967)

    Google Scholar 

  • Datyner, A., Finnimore, E.: A new staining method for the assay of proteins on polyacrylamide gels. Anal. Biochem. 52, 45–55 (1973)

    Google Scholar 

  • Dice, J. F., Schimke, R. T.: Turnover and exchange of ribosomal proteins from rat liver. J. Biol. Chem. 247, 98–111 (1972)

    Google Scholar 

  • Ford, P. J.: The proteins of Xenopus ovary ribosomes. Biochem. J. 125, 1091–1107 (1971)

    Google Scholar 

  • Fraenkel-Conrat, H.: Degradation of tobaco mosaic virus with acetic acid. Virology 4, 1–4 (1957)

    Google Scholar 

  • Hardy, S. J. S., Kurland, C. G., Voynow, P., Mora, G.: The ribosomal proteins of Escherichia coli. I. Purification of the 30S ribosomal proteins. Biochemistry 8, 2897–2905 (1969)

    Google Scholar 

  • Howard, G. A., Traut, R. R.: Separation and radioautography of microgram quantities of ribosomal proteins by two-dimensional polyacrylamide gel electrophoresis. FEBS Letters 29, 177–180 (1973)

    Google Scholar 

  • Ji, T. H.: Interference by detergents, chelating agents, and buffers with the Lowry protein determination. Anal Biochem. 52, 517–521 (1973)

    Google Scholar 

  • Kaltschmidt, E., Wittmann H.-G.: Ribosomal proteins. VII. Two dimensional polyacrylamide gel electrophoresis for fingerprinting ribosomal proteins. Anal. Biochem. 36, 401–412 (1970a)

    Google Scholar 

  • Kaltschmidt, E., Wittmann, H.-G.: Ribosomal proteins. XII. Number of proteins in small and large ribosomal subunits of E. coli as determined by two-dimensional gel electrophoresis. Proc. nat. Acad. Sci. (Wash.) 67, 1276–1282 (1970b)

    Google Scholar 

  • Kaltschmidt, E., Wittmann, H.-G.: Ribosomal proteins. XXXII. Comparison of several extraction methods for proteins from Escherichia coli ribosomes. Biochemie 54, 167–175 (1972)

    Google Scholar 

  • Kaulenas, M. S.: Rapid isolation of insect ribosomal subunits by ethanol-magnesium precipitation. Anal. Biochem. 41, 126–131 (1971)

    Google Scholar 

  • King, H. W. S., Gould, H. J., Shearman, J. J.: Molecular weight distribution of proteins in rabbit reticulocyte ribosomal subunits. J. molec. Biol. 61, 143–156 (1971)

    Google Scholar 

  • Leboy, P. S., Cox, E. C., Flaks, J. G.: The chromosomal site specifying a ribosomal protein in Escherichia coli. Proc. nat. Acad. Sci. (Wash.) 52, 1367–1374 (1964)

    Google Scholar 

  • Lowry, O. H., Rosebrough, N. J., Farr, A. L., Randall, R. J.: Protein measurement with the Folin phenol reagent. J. biol. Chem. 193, 265–275 (1951)

    CAS  PubMed  Google Scholar 

  • Martin, T. E., Rolleston, F. S., Low, R. B., Wool, I. G.: Dissociation and reassociation of skeletal muscle ribosomes. J. molec. Biol. 43, 135–149 (1969)

    Google Scholar 

  • Martin, T. E., Wool, I. G.: Active hybrid 80S particles formed from subunits of rat, rabbit and protozoan (Tetrahymena pyriformis) ribosomes. J. molec. Biol. 43, 151–161 (1969)

    Google Scholar 

  • Moore, P. B., Traut, R. R., Noller, H., Pearson, P., Delius, H.: Ribosomal proteins of Escherichia coli. II. Proteins of the 30S subunit. J. molec. Biol. 31, 441–461 (1968)

    Google Scholar 

  • Mutolo, V., Giudice, G., Hopps, V., Donatuti, G.: Species Specificity of embryonic ribosomal proteins. Biochim. biophys. Acta (Amst.) 138, 214–217 (1967)

    Google Scholar 

  • Perry, P. P., Kelley, D. E.: Buoyant densities of cytoplasmic ribonucleoprotein particles of mammalian cells: distinctive character of ribosomal subunits and the rapidly labeled components. J. molec. Biol. 16, 255–268 (1966)

    Google Scholar 

  • Racusen, D.: Stoichiometry of the amido black reaction with proteins. Anal. Biochem. 52, 96–101 (1973)

    Google Scholar 

  • Reynolds, J. A., Tanford, C.: Binding of dodecyl sulfate to proteins at high binding ratios. Possible implications for the state of proteins in biological membranes. Proc. natl. Acad. Sci. (Wash.) 66, 1002–1007 (1970)

    Google Scholar 

  • Schneider, W. C.: Determination of nucleic acids in tissues by pentose analysis. Meth. Enzymol. 3, 680–684 (1957)

    Google Scholar 

  • Sherton, C. C., Di Camelli, R. F., Wool, I. G.: Separation of large quantities of eukaryotic ribosomal subunits by zonal ultracentrifugation. Meth. Enzymol. 30 (F), 354–367 (1974)

    Google Scholar 

  • Sherton, C. C., Wool, I. G.: Determination of the number of proteins in liver ribosomes and ribosomal subunits by two-dimensional polyacrylamide gel electrophoresis. J. biol. Chem. 247, 4460–4467 (1972)

    Google Scholar 

  • Sherton, C. C., Wool, I. G.: Two-dimensional polyacrylamide gel electrophoresis of eukaryotic ribosomal proteins. Meth. Enzymol. 30 (F), 506–526 (1974a)

    Google Scholar 

  • Sherton, C. C., Wool, I. G.: A comparison of the proteins of rat skeletal muscle and liver ribosomes by two-dimensional polyacrylamide gel electrophoresis. Observations on the partition of proteins between ribosomal subunits and a description of two acidic proteins in the large subunit. J. biol. Chem. 249, 2258–2267 (1974b)

    Google Scholar 

  • Spitnik-Elson, P.: The preparation of ribosomal protein from Escherichia coli with lithium chloride and urea. Biochem. biophys. Res. Commun. 18, 557–562 (1965)

    Google Scholar 

  • Waller, J.-P., Harris, J. I.: Studies on the composition of the protein from Escherichia coli ribosomes. Proc. nat. Acad. Sci. (Wash.) 47, 18–23 (1961)

    Google Scholar 

  • Welfle, H., Stahl, J., Bielka, H.: Studies on proteins of animal ribosomes. VIII. Two-dimensional polyacrylamide gel electrophoresis of ribosomal proteins of rat liver. Biochim. biophys. Acta (Amst.) 243, 416–419 (1971)

    Google Scholar 

  • Welfle, H., Stahl, J., Bielka, H.: Studies on proteins of animal ribosomes. XIII. Enumeration of ribosomal proteins of rat liver. FEBS Letters 26, 228–232 (1972)

    Google Scholar 

  • Westermann, P., Bielka, H.: Studies on proteins of animal ribosomes. XV. Proteins of the small subunit of rat liver ribosomes: Isolation, amino acid composition, tryptic peptides and molecular weights. Mol. gen. Genet. 126, 349–356 (1973)

    Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Additional information

Communicated by H. G. Wittmann

Rights and permissions

Reprints and permissions

About this article

Cite this article

Sherton, C.C., Wool, I.G. The extraction of proteins from eukaryotic ribosomes and ribosomal subunits. Molec. Gen. Genet. 135, 97–112 (1974). https://doi.org/10.1007/BF00264778

Download citation

  • Received:

  • Issue Date:

  • DOI: https://doi.org/10.1007/BF00264778

Keywords

Navigation