Abstract
Cognitive impairment must be diagnosed in Alzheimer’s disease as early as possible. Early diagnosis allows the person to receive effective treatment benefits apart from helping him or her to remain independent longer. In this paper, different feature selection techniques are utilized with different classifiers in the classification of this chronic disease as normal control (NC), mild cognitive impairment (MCI) and Alzheimer’s disease (AD) based on the MRI images of ADNI dataset. Dimensionality reduction plays a major role in improving classification performance when there are fewer records with high dimensions. After different trials to select the ample features, support vector machine (SVM) with radial basis function kernel is found to produce better results with 96.82%, 89.39% and 90.40% accuracy for binary classification of NC/AD, NC/MCI and MCI/AD, respectively, with repeated tenfold stratified cross-validation. Combining mini-mental state examination (MMSE) score to the MRI data, there has been an improvement of 2.7% in the MCI/AD classification, but it does not have much influence in the NC/AD and NC/MCI classification.
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Moradi E, Pepe A, Gaser C, Huttunen H, Tohka J (2015) Machine learning framework for early MRI-based Alzheimer’s conversion prediction in MCI subjects. NeuroImage 104:398–412. https://doi.org/10.1016/j.neuroimage.2014.10.002
Minhas S, Khanum A, Riaz F, Khan SA, Alvi A (2018) Predicting progression from mild cognitive impairment to Alzheimer’s disease using autoregressive modelling of longitudinal and multimodal biomarkers. IEEE J Biomed Health Inform 22:818–825. https://doi.org/10.1109/JBHI.2017.2703918
Ju R, Hu C, Zhou P, Li Q (2019) Early diagnosis of Alzheimer’s disease based on resting-state brain networks and deep learning. IEEE/ACM Trans Comput Biol Bioinform 16:244–257. https://doi.org/10.1109/TCBB.2017.2776910
Pan X, Adel M, Fossati C, Gaidon T, Guedj E (2019) Multilevel feature representation of FDG-PET brain images for diagnosing Alzheimer’s disease. IEEE J Biomed Health Inform 23:1499–1506. https://doi.org/10.1109/JBHI.2018.2857217
Zhang D, Wang Y, Zhou L, Yuan H, Shen D (2011) Multimodal classification of Alzheimer’s disease and mild cognitive impairment. NeuroImage 55:856–867. https://doi.org/10.1016/j.neuroimage.2011.01.008
Liu J, Wang J, Tang Z, Hu B, Wu FX, Pan Y (2018) Improving Alzheimer’s disease classification by combining multiple Measures. IEEE/ACM Trans Comput Biol Bioinform 15:1649–1659. https://doi.org/10.1109/TCBB.2017.2731849
Shi J, Zheng X, Li Y, Zhang Q, Ying S (2018) Multimodal neuroimaging feature learning with multimodal stacked deep polynomial networks for diagnosis of Alzheimer’s disease. IEEE J Biomed Health Inform 22:173–183. https://doi.org/10.1109/JBHI.2017.2655720
Minhas S, Khanum A, Riaz F, Alvi A, Khan SA (2017) A Nonparametric approach for mild cognitive impairment to AD conversion prediction: results on longitudinal data. IEEE J Biomed Health Inform 21:1403–1410. https://doi.org/10.1109/JBHI.2016.2608998
Xu L, Yao Z, Li J, Lv C, Zhang H, Hu B (2019) Sparse feature learning with label information for Alzheimer’s disease classification based on magnetic resonance imaging. IEEE Access 7:26157–26167. https://doi.org/10.1109/ACCESS.2019.2894530
Cui R, Liu M (2019) Hippocampus analysis by combination of 3-D DenseNet and shapes for Alzheimer’s disease diagnosis. IEEE J Biomed Health Inform 23:2099–2107. https://doi.org/10.1109/JBHI.2018.2882392
Yue L, Gong X, Li J, Ji H, Li M, Nandi AK (2019) Hierarchical feature extraction for early Alzheimer’s disease diagnosis. IEEE Access 7:93752–93760. https://doi.org/10.1109/ACCESS.2019.2926288
Liu J, Li M, Lan W, Wu FX, Pan Y, Wang J (2018) Classification of Alzheimer’s disease using whole brain hierarchical network. IEEE/ACM Trans Comput Biol Bioinform 15:624–632. https://doi.org/10.1109/TCBB.2016.2635144
Li W, Zhao Y, Chen X, Xiao Y, Qin Y (2019) Detecting Alzheimer’s disease on small dataset: a knowledge transfer perspective. IEEE J Biomed Health Inform 23:1234–1242. https://doi.org/10.1109/JBHI.2018.2839771
Westman E, Muehlboeck JS, Simmons A (2012) Combining MRI and CSF measures for classification of Alzheimer’s disease and prediction of mild cognitive impairment conversion. NeuroImage 62:229–238. https://doi.org/10.1016/j.neuroimage.2012.04.056
Li Q, Wu X, Xu L, Chen K, Yao L (2018) Classification of Alzheimer’s disease, mild cognitive impairment, and cognitively unimpaired individuals using multi-feature kernel discriminant dictionary learning. Front Comput Neurosci 11:1–14. https://doi.org/10.3389/fncom.2017.00117
Ren F, Yang C, Qiu Q, Zeng N, Cai C, Hou C, Zou Q (2019) Exploiting discriminative regions of brain slices based on 2D CNNs for Alzheimer’s disease classification. IEEE Access 7:181423–181433. https://doi.org/10.1109/ACCESS.2019.2920241
Ben Ahmed O, Benois-Pineau J, Allard M, Ben Amar C, Catheline G (2014) Classification of Alzheimer’s disease subjects from MRI using hippocampal visual features. Multimed Tools Appl 74:1249–1266. https://doi.org/10.1007/s11042-014-2123-y
Richhariya B, Tanveer M, Rashid AH (2020) Diagnosis of Alzheimer’s disease using universum support vector machine based recursive feature elimination (USVM-RFE). Biomed Signal Process Control. https://doi.org/10.1016/j.bspc.2020.101903
Desikan RS, Ségonne F, Fischl B, Quinn BT, Dickerson BC, Blacker D, Buckner RL, Dale AM, Maguire RP, Hyman BT, Albert MS, Killiany RJ (2006) An automated labeling system for subdividing the human cerebral cortex on MRI scans into gyral based regions of interest. NeuroImage 31:968–980. https://doi.org/10.1016/j.neuroimage.2006.01.021
Reuter M, Schmansky NJ, Rosas HD, Fischl B (2012) Within-subject template estimation for unbiased longitudinal image analysis. NeuroImage 61:1402–1418. https://doi.org/10.1016/j.neuroimage.2012.02.084
Chu C, Hsu AL, Chou KH, Bandettini P, Lin CP (2012) Does feature selection improve classification accuracy? Impact of sample size and feature selection on classification using anatomical magnetic resonance images. NeuroImage 60:59–70. https://doi.org/10.1016/j.neuroimage.2011.11.066
Kaur T, Saini BS, Gupta S (2018) A novel feature selection method for brain tumor MR image classification based on the Fisher criterion and parameter-free Bat optimization. Neural Comput Appl 29:193–206. https://doi.org/10.1007/s00521-017-2869-z
Chang CC, Lin CJ (2011) LIBSVM: a library for support vector machines. ACM Trans Intell Syst Technol 2:1–39. https://doi.org/10.1145/1961189.1961199
Acknowledgements
Data collection and sharing for this project was funded by the Alzheimer's Disease Neuroimaging Initiative (ADNI) (National Institutes of Health Grant U01 AG024904) and DOD ADNI (Department of Defense award number W81XWH-12-2-0012). ADNI data are disseminated by the Laboratory for Neuro Imaging at the University of Southern California.
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Data used in preparation of this article were obtained from the Alzheimer’s Disease Neuroimaging Initiative (ADNI) database (adni.loni.usc.edu). As such, the investigators within the ADNI contributed to the design and implementation of ADNI and/or provided data but did not participate in analysis or writing of this report. A complete listing of ADNI investigators can be found at: http://adni.loni.usc.edu/wp-content/uploads/how_to_apply/ADNI_Acknowledgement_List.pdf.
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Divya, R., Shantha Selva Kumari, R. & the Alzheimer’s Disease Neuroimaging Initiative. Genetic algorithm with logistic regression feature selection for Alzheimer’s disease classification. Neural Comput & Applic 33, 8435–8444 (2021). https://doi.org/10.1007/s00521-020-05596-x
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DOI: https://doi.org/10.1007/s00521-020-05596-x