Abstract
One of the six sublineages of the dominant O/ME-SA/Ind2001 lineage of foot-and-mouth disease virus (FMDV), Ind2001BD1 has already spread throughout 14 countries, including Bangladesh. Here, we report the complete genome sequence of the potential serotype O vaccine strain BAN/TA/Dh-301/2016, which has been shown to provide protection against all the circulating serotype O viruses in Bangladesh. The viral genome is 8,211 nucleotide (nt) long with an open reading frame (ORF) of 6999 nt. The ORF is flanked by a 1098-nt-long 5′-UTR and a 114-nt-long 3′-UTR. Compared to the Indian FMDV serotype O vaccine strain O/India/R2/75 (AF204276), ten mutations were identified in the major antigenic sites of BAN/TA/Dh-301/2016 (MK088170.1).
This is a preview of subscription content, log in via an institution to check access.
Similar content being viewed by others
Data availability
The complete genome sequence of FMDV serotype O vaccine strain BAN/TA/Dh-301/2016 has been deposited in the NCBI GenBank database under the accession no. MK088170.1.
References
Alexandersen S, Zhang Z, Donaldson A, Garland A (2003) The pathogenesis and diagnosis of foot-and-mouth disease. J Comp Pathol 129(1):1–36
Ma X, Li P, Bai X, Sun P, Bao H, Lu Z, Cao Y, Li D, Chen Y, Qiao Z, Liu Z (2014) Sequences outside that of residues 93–102 of 3A protein can contribute to the ability of foot-and-mouth disease virus (FMDV) to replicate in bovine-derived cells. Virus Res 191:161–171
Jackson AL, O'Neill H, Maree F, Blignaut B, Carrillo C, Rodriguez L, Haydon DT (2007) Mosaic structure of foot-and-mouth disease virus genomes. J Gen Virol 88(Pt 2):487–492
Knowles NJ, Samuel AR (2003) Molecular epidemiology of foot-and-mouth disease virus. Virus Res 91(1):65–80
Siddique M, Ali M, Alam A, Ullah H, Rahman A, Chakrabarty R, Amin M, Hoque S, Nandi S, Sultana M (2018) Emergence of two novel sublineages Ind 2001 BD 1 and Ind2001 BD 2 of foot-and-mouth disease virus serotype O in Bangladesh. Transbound Emerg Dis 65:1009–1023. https://doi.org/10.1111/tbed.12834
Ullah H, Siddique MA, Al Amin M, Das BC, Sultana M, Hossain MA (2015) Re-emergence of circulatory foot-and-mouth disease virus serotypes Asia1 in Bangladesh and VP1 protein heterogeneity with vaccine strain IND 63/72. Lett Appl Microbiol 60(2):168–173
Sultana M, Siddique MA, Momtaz S, Rahman A, Ullah H, Nandi SP, Hossain MA (2014) Complete genome sequence of foot-and-mouth disease virus serotype O isolated from Bangladesh. Genome Announc 2(1):e01253-13(1)
Ullah H, Siddique MA, Sultana M, Hossain MA (2014) Complete genome sequence of foot-and-mouth disease virus type A circulating in Bangladesh. Genome Announc 2(3):e00506-14(3)
Ali MR, Alam A, Amin MA, Ullah H, Siddique MA, Momtaz S, Sultana M, Hossain MA (2017) Complete genome sequence of the circulatory foot-and-mouth disease virus serotype Asia1 in Bangladesh. Genome Announc 5(43):e01135-17
Al Amin M, Ali MR, Alam ARU, Siddique MA, Ullah H, Sultana M, Hossain MA (2019) Near-complete genome sequence of a potential foot-and-mouth disease virus serotype A vaccine strain isolated from Bangladesh. Microbiol Resour Announc 8(37):e00031–e119
Rweyemamu M, Booth J, Head M, Pay T (1978) Microneutralization tests for serological typing and subtyping of foot-and-mouth disease virus strains. Epidemiol Infect 81(1):107–123
Stothard P (2000) The sequence manipulation suite: JavaScript programs for analyzing and formatting protein and DNA sequences. Biotechniques 28(6):1102–1104
Marchler-Bauer A, Bo Y, Han L, He J, Lanczycki CJ, Lu S, Chitsaz F, Derbyshire MK, Geer RC, Gonzales NR (2016) CDD/SPARCLE: functional classification of proteins via subfamily domain architectures. Nucleic Acids Res 45(D1):D200–D203
Altschul SF, Madden TL, Schäffer AA, Zhang J, Zhang Z, Miller W, Lipman DJ (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 25(17):3389–3402
Kumar S, Stecher G, Tamura K (2016) MEGA7: molecular evolutionary genetics analysis version 7.0 for bigger datasets. Mol Biol Evol 33(7):1870–1874
Mahapatra M, Upadhyaya S, Parida S (2019) Identification of novel epitopes in serotype O foot-and-mouth disease virus by in vitro immune selection. J Gen Virol 100(5):804–811
Acknowledgements
The PI and co-authors thank the Higher Education Quality Enhancement Project (HEQEP) grant number CP-3842 (July 01, 2015 to June 30, 2018), University Grants Commission (UGC), Bangladesh, for funding for this work. The World Bank provided this fund through a soft loan to the Government of the People's Republic of Bangladesh.
Author information
Authors and Affiliations
Corresponding author
Ethics declarations
Conflict of interest
The authors declare that they have no conflict of interest.
Ethical approval
Prior ethical approval (Ref. 37/Biol.Scs/2016-2017, Date: 23.05.2017) was received from the appropriate authority of the University of Dhaka for conducting this study (Supplementary Fig. S2).
Additional information
Handling Editor: Zhenhai Chen.
Publisher's Note
Springer Nature remains neutral with regard to jurisdictional claims in published maps and institutional affiliations.
Electronic supplementary material
Below is the link to the electronic supplementary material.
Rights and permissions
About this article
Cite this article
Al Amin, M., Ali, M.R., Alam, A.S.M.R. et al. Complete genome sequence of a potential foot-and-mouth disease virus serotype O vaccine strain from Bangladesh. Arch Virol 165, 2119–2122 (2020). https://doi.org/10.1007/s00705-020-04711-6
Received:
Accepted:
Published:
Issue Date:
DOI: https://doi.org/10.1007/s00705-020-04711-6