Skip to main content

Advertisement

Log in

Lung Nodule Detection in CT Images Using a Raw Patch-Based Convolutional Neural Network

  • Published:
Journal of Digital Imaging Aims and scope Submit manuscript

Abstract

Remarkable progress has been made in image classification and segmentation, due to the recent study of deep convolutional neural networks (CNNs). To solve the similar problem of diagnostic lung nodule detection in low-dose computed tomography (CT) scans, we propose a new Computer-Aided Detection (CAD) system using CNNs and CT image segmentation techniques. Unlike former studies focusing on the classification of malignant nodule types or relying on prior image processing, in this work, we put raw CT image patches directly in CNNs to reduce the complexity of the system. Specifically, we split each CT image into several patches, which are divided into 6 types consisting of 3 nodule types and 3 non-nodule types. We compare the performance of ResNet with different CNNs architectures on CT images from a publicly available dataset named the Lung Image Database Consortium and Image Database Resource Initiative (LIDC-IDRI). Results show that our best model reaches a high detection sensitivity of 92.8% with 8 false positives per scan (FPs/scan). Compared with related work, our work obtains a state-of-the-art effect.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Fig. 1
Fig. 2
Fig. 3
Fig. 4

Similar content being viewed by others

References

  1. Siegel RL, Miller KD, Jemal A: Cancer statistics, 2015. CA Cancer J Clin 65(1):5–29, 2015

    Article  Google Scholar 

  2. Ma L, Wang DD, Zou B, Yan H: An eigen-binding site based method for the analysis of anti-EGFR drug resistance in lung cancer treatment. IEEE/ACM Trans Comput Biol Bioinform 14(5):1187–1194, 2017

    Article  CAS  Google Scholar 

  3. Kaneko M, Eguchi K, Ohmatsu H, Kakinuma R, Naruke T, Suemasu K, Moriyama N: Peripheral lung cancer: screening and detection with low-dose spiral CT versus radiography. Radiology 201(3):798–802, 1996

    Article  CAS  Google Scholar 

  4. Jiang H, Ma H, Qian W et al.: An automatic detection system of lung nodule based on multi-group patch-based deep learning network. IEEE J Biomed Health Inform 22:1227–1237, 2017

    Article  Google Scholar 

  5. Messay T, Hardie RC, Rogers SK: A new computationally efficient CAD system for pulmonary nodule detection in CT imagery. Med Image Anal 14(3):390–406, 2010

    Article  Google Scholar 

  6. Gurcan MN, Sahiner B, Petrick N, Chan HP, Kazerooni EA, Cascade PN, Hadjiiski L: Lung nodule detection on thoracic computed tomography images: Preliminary evaluation of a computer-aided diagnosis system. Med Phys 29(11):2552–2558, 2002

    Article  Google Scholar 

  7. Aerts HJ, Velazquez ER, Leijenaar RT, Parmar C, Grossmann P, Carvalho S, Bussink J, Monshouwer R, Haibe-Kains B, Rietveld D, Hoebers F: Decoding tumour phenotype by noninvasive imaging using a quantitative radiomics approach. Nat Commun 5:4006, 2014

    Article  CAS  Google Scholar 

  8. Balagurunathan Y, Gu Y, Wang H, Kumar V, Grove O, Hawkins S, Kim J, Goldgof DB, Hall LO, Gatenby RA, Gillies RJ: Reproducibility and prognosis of quantitative features extracted from CT images. Transl Oncol 7(1):72–87, 2014

    Article  Google Scholar 

  9. Rendon-Gonzalez E, Ponomaryov V: Automatic lung nodule segmentation and classification in CT images based on SVM. International Kharkiv Symposium on Physics and Engineering of Microwaves, Millimeter and Submillimeter Waves. IEEE 1–4, 2016

  10. Lee S L A, Kouzani A Z, Hu E J: A random forest for lung nodule identification. TENCON 2008 - 2008 IEEE Region 10 Conference. IEEE:1–5, 2008

  11. Adetiba E, Olugbara OO: Lung cancer prediction using neural network ensemble with histogram of oriented gradient genomic features. ScientificWorldJourna 2015:1–17, 2015. https://doi.org/10.1155/2015/786013

    Article  CAS  Google Scholar 

  12. Shan C: Learning local binary patterns for gender classification on real-world face images. Pattern Recognit Lett 33(4):431–437, 2012

    Article  Google Scholar 

  13. Orozco HM, Villegas OOV, Sánchez VGC, Domínguez HJO, Alfaro MJN: Automated system for lung nodules classification based on wavelet feature descriptor and support vector machine. Biomed Eng Online 14(1):9, 2015

    Article  Google Scholar 

  14. Tartar A, Akan A, Kilic N: A novel approach to malignant-benign classification of pulmonary nodules by using ensemble learning classifiers. Conf Proc IEEE Eng Med Biol Soc: 4651–4654, 2014

  15. Kang G, Liu K, Hou B, Zhang N: 3D multi-view convolutional neural networks for lung nodule classification. PLoS One 12:e0188290, 2017. https://doi.org/10.1371/journal.pone.0188290

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  16. Han F, Wang H, Zhang G, Han H, Song B, Li L, Moore W, Lu H, Zhao H, Liang Z: Texture feature analysis for computer-aided diagnosis on pulmonary nodules. J Digit Imaging 28(1):99–115, 2015

    Article  Google Scholar 

  17. Hinton GE, Osindero S, Teh YW: A fast learning algorithm for deep belief nets. Neural Comput, 2006. https://doi.org/10.1162/neco.2006.18.7.1527

    Article  Google Scholar 

  18. Szegedy C, Liu W, Jia Y, Sermanet P, Reed S, Anguelov D, Erhan D, Vanhoucke V, Rabinovich A: Going deeper with convolutions. Proc IEEE Comput Soc Conf Comput Vis Pattern Recognit, 2015.

  19. Ren S, He K, Girshick R, Sun J: Faster r-cnn: towards real-time object detection with region proposal networks. Adv Neural Inf Process Syst: 91–99, 2015

  20. Liang-Chieh C, Papandreou G, Kokkinos I, Murphy K, Yuille A: Semantic image segmentation with deep convolutional nets and fully connected crfs. International Conference on Learning Representations, 2015

  21. Krizhevsky A, Sutskever I, Hinton GE: Imagenet classification with deep convolutional neural networks. Adv Neural Inf Process Syst:1097–1105, 2012

  22. Simonyan K, Zisserman A: Very deep convolutional networks for large-scale image recognition. arXiv preprint arXiv:1409.1556, 2014

  23. He K, Zhang X, Ren S, Sun J: Deep residual learning for image recognition. Proc IEEE Comput Soc Conf Comput Vis Pattern Recognit 770–778, 2016

  24. Golan R, Jacob C, Denzinger J: Lung nodule detection in CT images using deep convolutional neural networks. International Joint Conference on Neural Networks: 243–250. 2016

  25. Wang S, Zhou M, Gevaert O, Tang Z, Dong D, Liu Z, Tian J: A multi-view deep convolutional neural networks for lung nodule segmentation. Conf Proc IEEE Eng Med Biol Soc 2017, 1752–1755

  26. Liu K, Kang G: Multiview convolutional neural networks for lung nodule classification. Int J Imaging Syst Technol, DOI:https://doi.org/10.1002/ima.22206, 2017

    Article  Google Scholar 

  27. Huang X, Shan J, Vaidya V: Lung nodule detection in CT using 3D convolutional neural networks. 2017 IEEE 14th International Symposium on Biomedical Imaging 379–383, 2017

  28. Gu Y, Lu X, Yang L, Zhang B, Yu D, Zhao Y, Gao L, Wu L, Zhou T: Automatic lung nodule detection using a 3D deep convolutional neural network combined with a multi-scale prediction strategy in chest CTs. Comput. Biol. Med. 103:220–231, 2018

    Article  Google Scholar 

  29. Zhu W, Liu C, Fan W, Xie X: Deeplung: Deep 3d dual path nets for automated pulmonary nodule detection and classification. 2018 IEEE Winter Conf. Appl. Comput. Vision, WACV: 673-681, 2018

  30. Armato SG, McLennan G, Bidaut L, McNitt-Gray MF, Meyer CR, Reeves AP, Zhao B, Aberle DR, Henschke CI, Hoffman EA, Kazerooni EA: The lung image database consortium (LIDC) and image database resource initiative (IDRI): a completed reference database of lung nodules on CT scans. Med Phys 38(2):915–931, 2011

    Article  Google Scholar 

  31. Van Ginneken B, Setio AA, Jacobs C, Ciompi F: Off-the-shelf convolutional neural network features for pulmonary nodule detection in computed tomography scans. IEEE Int. Symp. Biomed. Imaging:286–289, 2015

  32. Han F, Zhang G, Wang H, et al: A texture feature analysis for diagnosis of pulmonary nodules using LIDC-IDRI database. IEEE International Conference on Medical Imaging Physics and Engineering, 2014, 14–18.

  33. Htwe K Z, Yamamori K, Katayama T, Kyi T M: Automated lung nodule classification by artificial neural network and fuzzy inference system. Consumer Electronics, 2016 IEEE, Global Conference on IEEE, 2016 1–2.

  34. Van Ginneken B, Armato SG, de Hoop B, van Amelsvoort-van de Vorst S, Duindam T, Niemeijer M, Murphy K, Schilham A, Retico A, Fantacci ME, Camarlinghi N: Comparing and combining algorithms for computer-aided detection of pulmonary nodules in computed tomography scans: the ANODE09 study. Med Image Anal 14(6):707–722, 2011

    Article  Google Scholar 

  35. Fawcett T: An introduction to ROC analysis. Pattern Recognit Lett 27(8):861–874, 2006

    Article  Google Scholar 

  36. Setio AAA, Ciompi F, Litjens G, Gerke P, Jacobs C, van Riel SJ, Wille MMW, Naqibullah M, Sanchez CI, van Ginneken B: Pulmonary nodule detection in CT images: false positive reduction using multi-view convolutional networks. IEEE Trans Med Imaging 35(5):1160–1169, 2016

    Article  Google Scholar 

  37. Jiang H, Ma H, Qian W, Gao M, Li Y: An automatic detection system of lung nodule based on multi-group patch-based deep learning network. IEEE J Biomed Health Inform (99):1–1, 2017

  38. Khosravan N, Bagci U: S4ND: Single-shot single-scale lung nodule detection. Med Image Comput Comput Assist Interv:794–802, 2018

  39. Broyelle A: Automated Pulmonary Nodule Detection on Computed Tomography Images with 3D Deep Convolutional Neural Network, School of Computer Science and Communication KTHRoyal Institute of Technology, Stockholm 2018.

  40. Dou Q, Chen H, Jin Y, Lin H, Qin J, Heng PA: Automated pulmonary nodule detection via 3d convnets with online sample filtering and hybrid-loss residual learning. Med Image Comput Comput Assist Interv:630–638, 2017

Download references

Acknowledgments

This work is supported in part by National Natural Science Foundation of China (61772331). We would also like to thank the Shanghai Chest Hospital and department of micro/nanoelectronics at Shanghai Jiao Tong University.

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Weiguang Sheng.

Additional information

Publisher’s Note

Springer Nature remains neutral with regard to jurisdictional claims in published maps and institutional affiliations.

Electronic Supplementary Material

ESM 1

(HDF5 50,485 kb)

Rights and permissions

Reprints and permissions

About this article

Check for updates. Verify currency and authenticity via CrossMark

Cite this article

Wang, Q., Shen, F., Shen, L. et al. Lung Nodule Detection in CT Images Using a Raw Patch-Based Convolutional Neural Network. J Digit Imaging 32, 971–979 (2019). https://doi.org/10.1007/s10278-019-00221-3

Download citation

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1007/s10278-019-00221-3

Keywords

Navigation