Abstract
The use of polynomial functionals for describing two-body interactions in computational chemistry softwares has been surveyed and found to be prevalent. In this paper, Binomial and Maclaurin series expansions are used for expressing typical interatomic potential functions – such as Lennard-Jones, Morse, Rydberg and Buckingham potential – in a generic polynomial function, with the coefficients presented in a tabular format. Theoretical plots of these potential functions and their corresponding polynomial forms show increasing correlation with the order of polynomial, thereby validating the obtained polynomial’s coefficients. Conversely, a polynomial functional obtained by curve-fitting of experimental data can be converted into Morse, Rydberg and Buckingham potentials by using the generated table.
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R.M. Nieminen M.J. Puska M.J. Manninen (1990) Many-Atom Interactions in Solids Springer Berlin
J.N. Murrell S. Carter S.C. Farantos P. Huxley A.J.C. Varandas (1984) Molecular Potential Energy Functions Wiley New York
S. Erkoc (1997) Phys. Rep. 278 79 Occurrence Handle10.1016/S0370-1573(96)00031-2
A.K. Rappe C.J. Casewit (1997) Molecular Mechanics across Chemistry University Science Books California
F. Jensen (1999) Introduction to Computational Chemistry Wiley West Sussex
D.W. Brenner (2000) Phys. Status Solidi B 217 23 Occurrence Handle10.1002/(SICI)1521-3951(200001)217:1<23::AID-PSSB23>3.0.CO;2-N
T.C. Lim (2002) J. Math. Chem. 31 421 Occurrence Handle10.1023/A:1021024806235 Occurrence HandleMR1963241
T.C. Lim (2002) J. Math. Chem. 32 249 Occurrence Handle10.1023/A:1022174923270 Occurrence HandleMR1963299
T.C. Lim (2003) J. Math. Chem. 33 29 Occurrence Handle10.1023/A:1023243413549 Occurrence HandleMR2011213
T.C. Lim (2003) J. Math. Chem. 33 279 Occurrence Handle10.1023/A:1024798909685 Occurrence HandleMR1982539
T.C. Lim (2003) J. Math. Chem. 34 221 Occurrence Handle10.1023/B:JOMC.0000004071.86802.e9 Occurrence HandleMR2049926
T.C. Lim (2004) J. Math. Chem. 36 139 Occurrence Handle10.1023/B:JOMC.0000038773.33727.e3 Occurrence HandleMR2086376
T.C. Lim (2004) Z. Naturforsch. A 59 116
T.C. Lim (2003) Z. Naturforsch. A 58 615
T.C. Lim (2004) Czech. J. Phys. 54 553 Occurrence Handle10.1023/B:CJOP.0000024958.15224.33
T.C. Lim (2004) Czech. J. Phys. 54 947 Occurrence Handle10.1023/B:CJOP.0000042647.51651.2a
T.C. Lim (2004) Chin. Phys. Lett. 21 2167 Occurrence Handle10.1088/0256-307X/21/11/025
T.C. Lim (2005) Chin. J. Phys. 43 43
T.C. Lim (2004) Physica Scripta 70 347
T.C. Lim (2005) MATCH Commun. Math. Comput. Chem. 54 29 Occurrence HandleMR2150703
T.C. Lim (2003) MATCH Commun. Math. Comput. Chem. 49 155
T.C. Lim (2004) MATCH Commun. Math. Comput. Chem. 50 185 Occurrence HandleMR2037433
T.C. Lim (2004) J. Math. Chem. 36 147 Occurrence Handle10.1023/B:JOMC.0000038772.74111.05 Occurrence HandleMR2086377
E.M. Engler J.D. Andose P.v.R. Schleyer (1973) J. Am. Chem. Soc. 95 8005 Occurrence Handle10.1021/ja00805a012
N.L. Allinger (1977) J. Am. Chem. Soc. 99 8127 Occurrence Handle10.1021/ja00467a001
S. Lifson A.T. Hagler P. Dauber (1979) J. Am. Chem. Soc. 101 5111 Occurrence Handle10.1021/ja00512a001
R. Brooks R.E. Bruccoleri B.D. Olafson D.L. States S. Swaminathan M. Karplus (1983) J. Comput. Chem 4 187 Occurrence Handle10.1002/jcc.540040211
W.F. van Gunsteren and H.J.C. Berendsen, GROMOS: Groningen Molecular Simulation Software, Technical Report, Laboratory of Physical Chemistry, University of Groningen (1988).
M. Clark R.D. Cramer SuffixIII N. Opdenbosch Particlevan (1989) J. Comput. Chem. 10 982 Occurrence Handle10.1002/jcc.540100804
N.L. Allinger Y.H. Yuh J.H. Lii (1989) J. Am. Chem. Soc. 111 8551 Occurrence Handle10.1021/ja00205a001
S.L. Mayo B.D. Olafson W.A. Goddard SuffixIII (1990) J. Phys. Chem. 94 8897 Occurrence Handle10.1021/j100389a010
S.D. Morley R.J. Abraham I.S. Haworth D.E. Jackson M.R. Saunders J.G. Vinter (1991) J. Comput.-Aided Mol. Des. 5 475 Occurrence Handle10.1007/BF00125666 Occurrence Handle1770382
V.S. Allured C.M. Kelly C.R. Landis (1991) J. Am. Chem. Soc. 113 1 Occurrence Handle10.1021/ja00001a001
A.K. Rappe C.J. Casewit K.S. Colwell W.A. Goddard SuffixIII W.M. Skiff (1992) J. Am. Chem. Soc. 114 10024 Occurrence Handle10.1021/ja00051a040
M.J. Hwang T.P. Stockfisch A.T. Hagler (1994) J. Am. Chem. Soc. 116 2515 Occurrence Handle10.1021/ja00085a036
W.D. Cornell P. Cieplak C.I. Bayly I.R. Gould K.M. Merz SuffixJr G.M. Ferguson D.C. Spellmeyer T. Fox J.W. Caldwell P.A. Kollman (1995) J. Am. Chem. Soc. 117 5179 Occurrence Handle10.1021/ja00124a002
P. Comba T.W. Hambley (1995) Molecular Modeling of Inorganic Compounds EditionNumber1 Weinheim VCH
J.M.L. Dillen (1995) J. Comput. Chem. 16 595 Occurrence Handle10.1002/jcc.540160508
T.A. Halgren (1996) J. Comput. Chem. 17 490 Occurrence Handle10.1002/(SICI)1096-987X(199604)17:5/6<490::AID-JCC1>3.0.CO;2-P
N.L. Allinger K. Chen J.H. Lii (1996) J. Comput. Chem. 17 642 Occurrence Handle10.1002/(SICI)1096-987X(199604)17:5/6<642::AID-JCC6>3.0.CO;2-U
W. Damm A. Frontera J. Tirado-Rives W.L. Jorgensen (1997) J. Comput. Chem. 18 1955 Occurrence Handle10.1002/(SICI)1096-987X(199712)18:16<1955::AID-JCC1>3.0.CO;2-L
J.E. Lennard-Jones (1924) Proc. Roy Soc. Lond A 106 463
P.M. Morse (1929) Phys. Rev. 34 57 Occurrence Handle10.1103/PhysRev.34.57
R. Rydberg (1931) Z. Phys. 73 376
R.A. Buckingham (1938) Proc. Roy. Soc. Lond A 168 264
T.C. Lim (2004) J. Math. Chem. 36 261 Occurrence Handle10.1023/B:JOMC.0000044223.40611.00 Occurrence HandleMR2101449
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Lim, TC. Polynomial Forms of Typical Interatomic Potential Functions. J Math Chem 38, 495–501 (2005). https://doi.org/10.1007/s10910-004-6903-x
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DOI: https://doi.org/10.1007/s10910-004-6903-x