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Identification and fine mapping of a resistance gene to Magnaporthe oryzae in a space-induced rice mutant

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Abstract

Finding novel sources of resistance (R) to rice blast disease should facilitate breeding for improved resistance. The objectives of the present study were to evaluate reactions to blast and identify in a space-induced mutant an R gene to a representative isolate of rice blast pathogen. The mutant H4, its parent and twelve monogenic lines were evaluated for their responses to 35 isolates collected from Guangdong Province, China. H4 was found to be resistant to more isolates than its parent and the twelve monogenic lines, suggesting newly acquired resistance may be a function of one or more R genes. A representative isolate GD0193 was used to identify and map the R gene from H4. Genetic analysis revealed that resistance to the isolate GD0193 was controlled by a single dominant gene, designated Pi46(t). Linkage analysis using susceptible F2 individuals showed that Pi46(t) was mapped between the markers RM224 and RM27360 within 1.04 and 1.2 cM on the long arm of chromosome 11. Subsequently, Pi46(t) was delimited to an interval of approximately 183.7 kb flanked by the markers K67 and T94. These results provide essential information for the cloning of the Pi46(t) gene and will facilitate marker-assisted selection in rice breeding.

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References

  • Ahn SN, Kim YK, Hong HC, Han SS, Kwon SJ, Choi HC, Moon HP, McCouch SR (2000) Molecular mapping of a new gene for resistance to rice blast (Pyricularia grisea Sacc.). Euphytica 116(1):17–22

    Article  CAS  Google Scholar 

  • Amante-Bordeos A, Sitch LA, Nelson R, Damacio RD, Oliva NP, Aswidinnoor H, Leung H (1992) Transfer of bacterial blight and blast resistance from the tetraploid wild rice Oryza minuta to cultivated rice, Oryza sativa. Theor Appl Genet 84:345–354

    Article  Google Scholar 

  • Ashikawa I, Hayashi N, Yamane H, Kanamori H, Wu JZ, Matsumoto T, Ono K, Yano M (2008) Two adjacent nucleotide-binding-site leucine-rich-repeat class genes are required to confer Pikm-specific rice blast resistance. Genetics 180:2267–2276

    Article  PubMed  CAS  Google Scholar 

  • Badhwar G (1997) The radiation environment in low-earth orbit. Radiat Res 148:3–10

    Article  Google Scholar 

  • Ballini E, Morel JB, Droc G, Price A, Courtois B, Notteghem JL, Tharreau D (2008) A genome-wide meta-analysis of rice blast resistance genes and quantitative trait loci provides new insights into partial and complete resistance. Mol Plant Microbe Interact 21(7):859–868

    Article  PubMed  CAS  Google Scholar 

  • Bonman JM, Vergael de Dios TI, Khin MM (1986) Physiological specialization of Pyricularia oryzae in the Philippines. Plant Dis 70:767–769

    Article  Google Scholar 

  • Bryan GT, Wu KS, Farrall L, Jia YL, Hershey HP, McAdams SA, Faulk KN, Donaldson GK, Tarchini R, Valent B (2000) A single amino acid difference distinguishes resistant and susceptible alleles of the rice blast resistance gene Pi-ta. Plant Cell 12:2033–2046

    Article  PubMed  CAS  Google Scholar 

  • Chauhan RS, Farman ML, Zhang HB, Leong SA (2002) Genetic and physical mapping of a rice blast resistance locus, PiCO39(t), that corresponds to the avirulence gene AVR1-CO39 of Magnaporthe grisea. Mol Genet Genomics 267:603–612

    Article  PubMed  CAS  Google Scholar 

  • Chen DH, Dela Vina M, Inukai T, Mackill DJ, Ronald PC, Neslon RJ (1999) Molecular mapping of the blast resistance gen, Pi44(t), derived from a durably resistant rice cultivar. Theor Appl Genet 98:1046–1053

    Article  CAS  Google Scholar 

  • Chen S, Wang L, Que ZQ, Pan RQ, Pan QH (2005) Genetic and physical mapping of Pi37(t), a new gene conferring resistance to rice blast in the famous cultivar St. No. 1. Theor Appl Genet 111:1563–1570

    Article  PubMed  CAS  Google Scholar 

  • Chen XW, Shang JJ, Chen DX, Lei CL, Zou Y, Zhai WX, Liu GZ, Xu JC, Ling ZZ, Cao G, Ma BT, Wang YP, Zhao XF, Li SG, Zhu LH (2006) A B-lectin receptor kinase gene conferring rice blast resistance. Plant J 46:794–804

    Article  PubMed  CAS  Google Scholar 

  • Cheng ZL, Liu M, Zhang M, Hang XM, Lei CL, Sun YQ (2007) Transcriptomic analyses of space-induced rice mutants with enhanced susceptibility to rice blast. Adv Space Res 40:540–549

    Article  CAS  Google Scholar 

  • Couch BC, Kohn LM (2002) A multilocus gene genealogy concordant with host preference indicates segregation of a new species, Magnaporthe oryzae, from M. grisea. Mycologia 94:683–693

    Article  PubMed  CAS  Google Scholar 

  • Cyranoski D (2001) Satellite will probe mutating seeds in space. Nature 410:857

    Article  PubMed  CAS  Google Scholar 

  • Deng YW, Zhu XD, Shen Y, He ZH (2006) Genetic characterization and fine mapping of the blast resistance locus Pigm(t) tightly linked to Pi2 and Pi9 in a broad-spectrum resistant Chinese variety. Theor Appl Genet 113:705–713

    Article  PubMed  CAS  Google Scholar 

  • Fjellstrom RG, Conaway-Bormans CA, McClung AM, Marchetti MA, Shank AR, Park WD (2004) Development of DNA markers suitable for marker assisted selection of three Pi genes conferring resistance to multiple Pyricularia grisea pathotypes. Crop Sci 44:1790–1798

    Article  CAS  Google Scholar 

  • Fukuoka S, Saka N, Koga H, Ono K, Shimizu T, Ebana K, Hayashi N, Takahashi A, Hirochika H, Okuno K, Yano M (2009) Loss of function of a proline-containing protein confers durable disease resistance in rice. Science 325:998–1001

    Article  PubMed  CAS  Google Scholar 

  • Gowda M, Roy-Barman S, Chattoo BB (2006) Molecular mapping of a novel blast resistance gene Pi38 in rice using SSLP and AFLP markers. Plant Breed 125(6):596–599

    Article  CAS  Google Scholar 

  • Hayashi K, Yoshida H, Ashikawa I (2006) Development of PCR-based allele-specific and InDel marker sets for nine rice blast resistance genes. Theor Appl Genet 113(2):251–260

    Article  PubMed  CAS  Google Scholar 

  • Hittalmani S, Parco A, Mew TV, Zeigler RS, Huang N (2000) Fine mapping and DNA marker-assisted pyramiding of the three major genes for blast resistance in rice. Theor Appl Genet 100:1121–1128

    Article  CAS  Google Scholar 

  • Inukai T, Zeigler RS, Sarkarung S, Bronson M, Dung LV, Kinoshita T, Nelson RJ (1996) Development of pre-isogenic lines for rice blast-resistance by marker-aided selection from a recombinant inbred population. Theor Appl Genet 93:560–567

    Article  CAS  Google Scholar 

  • Jeon JS, Chen D, Yi GH, Wang GL, Ronald PC (2003) Genetic and physical mapping of Pi5(t), a locus associated with broad-spectrum resistance to rice blast. Mol Genet Genomics 269:280–289

    PubMed  CAS  Google Scholar 

  • Jeung JU, Kim BR, Cho YC, Han SS, Moon HP, Lee YT, Jena KK (2007) A novel gene, Pi40(t), linked to the DNA markers derived from NBS-LRR motifs confers broad spectrum of blast resistance in rice. Theor Appl Genet 115(8):1163–1177

    Article  PubMed  CAS  Google Scholar 

  • Lee S, Wamishe Y, Jia Y, Liu G, Jia MH (2009a) Identification of two major resistance genes against race IE-1 k of Magnaporthe oryzae in the indica rice cultivar Zhe733. Mol Breed 24:127–134

    Article  CAS  Google Scholar 

  • Lee SK, Song MY, Seo YS, Kim HK, Ko S, Cao PJ, Suh JP, Yi G, Roh JH, Lee S, An G, Hahn TR, Wang GL, Ronald P, Jeon JS (2009b) Rice Pi5-mediated resistance to Magnaporthe oryzae requires the presence of two coiled-coil–nucleotide-binding–leucine-rich repeat genes. Genetics 181:1627–1638

    Article  PubMed  CAS  Google Scholar 

  • Li LY, Wang L, Jing JX, Li ZQ, Lin F, Huang LF, Pan QH (2007a) The Pik m gene, conferring stable resistance to isolates of Magnaporthe oryzae, was finely mapped in a crossover-cold region on rice chromosome 11. Mol Breed 20:179–188

    Article  CAS  Google Scholar 

  • Li Y, Liu M, Cheng Z, Sun Y (2007b) Space environment induced mutations prefer to occur at polymorphic sites of rice genomes. Adv Space Res 40:523–527

    Article  CAS  Google Scholar 

  • Lin F, Chen S, Que ZQ, Wang L, Liu XQ, Pan QH (2007) The blast resistance gene Pi37 encodes a nucleotide binding site leucine-rich repeat protein and is a member of a resistance gene cluster on rice chromosome 1. Genetics 177:1871–1880

    Article  PubMed  CAS  Google Scholar 

  • Liu XQ, Lin F, Wang L, Pan QH (2007a) The in silico map-based cloning of Pi36, a rice coiled-coil nucleotide-binding site leucine-rich repeat gene that confers race-specific resistance to the blast fungus. Genetics 176:2541–2549

    Article  PubMed  CAS  Google Scholar 

  • Liu XQ, Yang QZ, Lin F, Hua LX, Wang CT, Wang L, Pan QH (2007b) Identification and fine mapping of Pi39(t), a major gene conferring the broad-spectrum resistance to Magnaporthe oryzae. Mol Genet Genomics 278:403–410

    Article  PubMed  CAS  Google Scholar 

  • Luis FJ, Jose CF, Faboi E, Prado G, Girlena A, Myriam CD, Joe T (2008) Identification of microsatellite markers linked to the blast resistance gene Pi-1(t) in rice. Euphytica 160(3):295–304

    Article  Google Scholar 

  • Marchetti MA, Lai X, Bollich CN (1987) Inheritance of resistance to Pyricularia oryzae in rice cultivars grown in the United States. Phytopathology 77:799–804

    Article  Google Scholar 

  • Mei MT, Qiu Y, Sun YQ, Huang R, Yao J, Zhang QY (1998) Morphological and molecular changes of maize plants after seeds been flown on recoverable satellite. Adv Space Res 22:1691–1697

    Article  PubMed  CAS  Google Scholar 

  • Nakamura S, Asakawa S, Ohmido N, Fukui K, Shimizu N, Kawasaki S (1997) Construction of an 800-kb contig in the near-centromeric region of the rice blast resistance gene Pi-ta 2 using a highly representative rice BAC library. Mol Gen Genet 254(6):611–620

    Article  PubMed  CAS  Google Scholar 

  • Pan QH, Wang L, Ikehashi H, Yamagata H, Tanisaka T (1998) Identification of two new genes conferring resistance to rice blast in Chinese native rice cultivar “Maowangu”. Plant Breed 117:27–31

    Article  Google Scholar 

  • Pan QH, Hu ZD, Tanisaka T, Wang L (2003) Fine mapping of the blast resistance gene Pi15, linked to Pii, on rice chromosome 9. Acta Bot Sin 45:871–877

    CAS  Google Scholar 

  • Qu SH, Liu GF, Zhou B, Bellizzi M, Zeng LR, Dai LY, Han B, Wang GL (2006) The broad-spectrum blast resistance gene Pi9 encodes a nucleotide-binding site-leucine-rich repeat protein and is a member of a multigene family in rice. Genetics 172:1901–1914

    Article  PubMed  CAS  Google Scholar 

  • Shang JJ, Tao Y, Chen XW, Zou Y, Lei CL, Wang J, Li XB, Zhao XF, Zhang MJ, Lu ZK, Xu JC, Cheng ZK, Wan JM, Zhu LM (2009) Identification of a new rice blast resistance gene, Pid3, by genome-wide comparison of paired NBS-LRR genes and their pseudogene alleles between the two sequenced rice genomes. Genetics 182:1303–1311

    Article  PubMed  CAS  Google Scholar 

  • Sun X, Yang Z, Wang S, Zhang Q (2003) Identification of a 47-kb DNA fragment containing Xa4, a locus for bacterial blight resistance in rice. Theor Appl Genet 106:683–687

    PubMed  CAS  Google Scholar 

  • The Rice Chromosomes 11, 12 Sequencing Consortia (2005) The sequence of rice chromosomes 11 and 12, rich in disease resistance genes and recent gene duplications. BMC Biol 3(20):1–18

    Google Scholar 

  • Tsunematsu H, Yanoria MJT, Ebron LA, Hayashi N, Ando I, Kato H, Imbe T, Khush GS (2000) Development of monogenic lines of rice for blast resistance. Breed Sci 50:229–234

    Google Scholar 

  • Wang GL, Mackill DJ, Bonman JM, McCouch SR, Champoux MC, Nelson RJ (1994) RFLP mapping of genes conferring complete and partial resistance to blast in a durably resistance rice cultivar. Genetics 136:1421–1434

    PubMed  CAS  Google Scholar 

  • Wang ZX, Yano M, Yamanouchi U, Iwamoto M, Monna L, Hayasaka H, Katayose Y, Sasaki T (1999) The Pib gene for rice blast resistance belongs to the nucleotide binding and leucine-rich repeat class of plant disease resistance genes. Plant J 19:55–64

    Article  PubMed  Google Scholar 

  • Wang C, Tan M, Xu X, Wen G, Zhang D, Lin X (2003) Locating the bacterial blight resistance gene, Xa22(t), to a 100-kilobase bacterial artificial chromosome. Phytopathology 93:1258–1262

    Article  PubMed  CAS  Google Scholar 

  • Wei LJ, Xu JL, Wang JM, Yang Q, Luo RT, Zhang MX, Bao GL, Sun YQ (2006) A comparative study on mutagenic effects of space flight and irradiation of γ-rays on rice. Agric Sci Chin 5(11):812–819

    Google Scholar 

  • Wu JL, Wu CJ, Lei CL, Baraoidan M, Bordeos A, Madamba MRS, Ramous-Pamplona M, Mauleon R, Portugal A, Ulat VJ, Bruskiewich R, Wang GL, Leach J, Khush G, Leung H (2005) Chemical- and irradiation-induced mutants of indica rice IR64 for forward and reverse genetics. Plant Mol Biol 59:85–97

    Article  PubMed  CAS  Google Scholar 

  • Xiao WM, Yang QY, Chen ZQ, Wang H, Guo T, Liu YZ, Zhu XY (2009) Blast-resistance inheritance of space-induced rice lines and their genomic polymorphism by microsatellite markers. Agric Sci Chin 8(4):101–105

    Google Scholar 

  • Xu X, Hayashi N, Wang CT, Kato H, Fujimura T, Kawasaki S (2008) Efficient authentic fine mapping of the rice blast resistance gene Pik-h in the Pik cluster, using new Pik-h-differentiating isolates. Mol Breed 22(2):289–299

    Article  CAS  Google Scholar 

  • Yang Z, Sun X, Wang S, Zhang Q (2003) Genetic and physical mapping of a new gene for bacterial blight resistance in rice. Theor Appl Genet 106:1467–1472

    PubMed  CAS  Google Scholar 

  • Yang QZ, Lin F, Wang L, Pan QH (2009) Identification and mapping of Pi41, a major gene conferring resistance to rice blast in the Oryza sativa subsp. indica reference cultivar, 93–11. Theor Appl Genet 118:1027–1034

    Article  PubMed  CAS  Google Scholar 

  • Yu ZH, Mackill DJ, Bonman JM, Tanksley SD (1991) Tagging genes for blast resistance in rice via linkage to RFLP markers. Theor Appl Genet 81:471–476

    Article  Google Scholar 

  • Zhang MX, Xu JL, Luo RT, Shi D, Li ZK (2003) Genetic analysis and breeding use of blast resistance in a japonica rice mutant R917. Euphytica 130:71–76

    Article  CAS  Google Scholar 

  • Zhou T, Wang Y, Chen JQ, Araki H, Jing Z, Jiang K, Shen J, Tian D (2004) Genome-wide identification of NBS genes in japonica rice reveals significant expansion of divergent non-TIR NBS-LRR genes. Mol Genet Genomics 271(4):402–415

    Article  PubMed  CAS  Google Scholar 

  • Zhou B, Qu SH, Liu GF, Dolan M, Sakai H, Lu GD, Bellizzi M, Wang GL (2006) The eight amino-acid differences within three leucine-rich repeats between Pi2 and Piz-t resistance proteins determine the resistance specificity to Magnaporthe grisea. Mol Plant Microbe Interact 19:1216–1228

    Article  PubMed  CAS  Google Scholar 

  • Zhu ML, Wang L, Pan QH (2004) Identification and characterization of a new blast resistance gene located on rice chromosome 1 through linkage and differential analyses. Phytopathology 94:515–519

    Article  PubMed  CAS  Google Scholar 

  • Zhuang JY, Ma WB, Wu JL, Chai RY, Lu J, Fan YY, Jin MZ, Leung H, Zheng KL (2002) Mapping of leaf and neck blast resistance genes with resistance gene analog, RAPD and RFLP in rice. Euphytica 128:363–370

    Article  CAS  Google Scholar 

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Acknowledgments

We thank the Rice Research Institute, Guangdong Academy of Agricultural Sciences, for providing the seeds of Zhonger Ruanzhan. We are grateful to the Institute of Plant Protection, Chinese Academy of Agricultural Sciences, for providing the monogenic lines in this study. This research was supported by the National 863 Program of China (2007AA100101), the National Key Technology Research & Development Program of China (2008BAD97B02), the Natural Science Foundation of Guangdong Province, China (815106400100002), and the earmarked fund for Modern Agro-industry Technology Research System.

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Correspondence to Zhiqiang Chen.

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Wuming Xiao and Qiyun Yang contributed equally to this work.

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Xiao, W., Yang, Q., Wang, H. et al. Identification and fine mapping of a resistance gene to Magnaporthe oryzae in a space-induced rice mutant. Mol Breeding 28, 303–312 (2011). https://doi.org/10.1007/s11032-010-9481-6

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