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Genetic stability of three economically important micropropagated banana (Musa spp.) cultivars of lower Indo-Gangetic plains, as assessed by RAPD and ISSR markers

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Abstract

An efficient micropropagation protocol produced large number of plants of the three elite banana (Musa spp.) cultivars Robusta (AAA), Giant Governor (AAA) and Martaman (AAB) from shoot tip meristem. The genetic relationships and fidelity among the cultivars and micropropagated plants as assessed by random amplified polymorphic DNA (RAPD) and inter-simple sequence repeat (ISSR) markers, revealed three somaclonal variants from Robusta and three from Giant Governor. A total of 5330 RAPD and 2741 ISSR fragments were generated with 21 RAPD and 12 ISSR primers in micropropagated plants. The percentage of polymorphic loci by RAPD and ISSR were found to be 1.75, 5.08 in Robusta and 0.83, 5.0 in Giant Governor respectively. Among the two marker systems used, ISSR fingerprinting detected more polymorphism than RAPD in Robusta and Giant Governor with most of the primers showing similar fingerprinting profile, whereas Martaman revealed complete genetic stability.

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Abbreviations

AdSO4 :

adenine sulphate

BA:

6-benzylaminopurine

IBA:

indole-3-butyric acid

ISSR:

inter-simple sequence repeat

MS:

Murashige and Skoog’s (1962) medium

RAPD:

random amplified polymorphic DNA

References

  • Bhat KV, Jarret RL, (1995) Random amplified polymorphic DNA and genetic diversity in Indian Musa germplasm Genet. Res. Crop Evol. 42: 107–118

    Article  Google Scholar 

  • Chaterjee G, Prakash J, (1996) Genetic stability in commercial tissue culture In: Prakash J, Pierik RIM, (eds) Plant Biotechnology: Commercial Prospects and Problems Oxford IBH Publishing Co. New Delhi, India (pp. 11–121)

    Google Scholar 

  • Chattopadhyay PK & Hasan MA (2000) Current status of banana production and utilization in West Bengal. In: Singh HP & Chadha KL (eds) Banana: Improvement, Production and Utilization (pp 70–74). Association for the Improvement in Production and Utilisation of Banana, Trichy, India

  • Damasco OP, Graham GC, Henry RJ, Adkins SW, Godwin ID, (1996) Random amplified polymorphic DNA (RAPD) detection of dwarf off-types in micropropagated Cavendish (Musa spp. AAA) bananas Plant Cell Rep. 16: 118–123

    CAS  Google Scholar 

  • D’ Amato F (1978) Chromosome number variation in cultured cells and regenerated plants In: Thorp TA (ed) Frontiers of Plant Tissue Culture. Proc 4th Int Cong Plant Tissue Culture Calgary (pp 287–295)

  • Devarumath RM, Nandy S, Rani V, Marimuthu S, Muraleedharan N, Raina SN, (2002) RAPD, ISSR and RFLP fingerprints as useful markers to evaluate genetic integrity of micropropagated plants of three diploid and triploid elite tea clones representing Camellia sinensis (China type) and C. assamica ssp. assamica (Assam-Indian Type) Plant Cell Rep. 21: 166–173

    Article  CAS  Google Scholar 

  • Fourre JL, Berger P, Niquet L, Andre P, (1997) Somatic embryogenesis and somaclonal variation in Norway spruce: morphogenetic, cytogenetic and molecular approaches Theor. Appl. Genet. 94: 159–169

    Article  Google Scholar 

  • Gimenez C, Garcia ED, Enrech NXD, Blanca I, (2001) Somaclonal variation in banana: cytogenetic and molecular characterization of somaclonal variant CIEN BTA−03 In Vitro Cell Dev. Biol. Plant. 37: 217–222

    Article  CAS  Google Scholar 

  • Gould AR, (1986) Factors controlling generation of variability in vitro In: Vasil IK, (ed) Cell Culture and Somatic Cell Genetics in Plants. 3. Plant Regeneration and Genetic Variability Academic Press Orlando (pp. 549–567)

    Google Scholar 

  • Gupta PK, Varshney RK, (1999) Molecular markers for genetic fidelity during micropropagation and germplasm conservation Curr. Sci. 76: 1308–1310

    Google Scholar 

  • Haisel D, Hofman P, Vagneri M., Lipavska H, Ticha L, Schafer C, Capkova V, (2001) Ex vitro phenotype stability is affected by in vitro cultivation Biol. Plant. 44: 321–324

    Article  CAS  Google Scholar 

  • Hartmann C, Henry Y, De Buyser J, Aubry C, Rode A, (1989) Identification of new mitochondrial genome organizations in wheat plants regenerated from somatic tissue cultures Theor. Appl. Genet. 77: 169–175

    Article  Google Scholar 

  • Howell EC, Newbury HJ, Swennen RL, Withers LA, Ford-Lloyd BV, (1994) The use of RAPD for identifying and classifying Musa germplasm Genome 37: 328–332

    PubMed  CAS  Google Scholar 

  • Isabel N, Tremblay L, Michaud M, Tremblay FM, Bousquet J, (1993) RAPDs as an aid to evaluate the genetic integrity of somatic embryogenesis derived populations of Picea mariana (Mill.) BSP Theor. Appl. Genet. 86: 81–87

    Article  CAS  Google Scholar 

  • Jaccard P, (1908) Nouvelles recherches surla distribution florale Bull. Soc. Vaud. Sci. Nat. 44: 223–270

    Google Scholar 

  • Larkin P, Scowcroft WR, (1981) Somaclonal variation, a noval source of variability from cell cultures for plant improvement Theor. Appl. Genet. 60: 197–214

    Article  Google Scholar 

  • Mante S, Tepper HB, (1983) Propagation of Musa textilis Neé plants from apical meristem slices in vitro Plant Cell Tiss. Org. Cult. 2: 151–159

    Article  Google Scholar 

  • Mantel N, (1967) The detection of disease clustering and a generalized regression approach Cancer Res. 27: 209–220

    PubMed  CAS  Google Scholar 

  • Martins M, Tenreiro R, Oliveira MM, (2003) Genetic relatedness of Portuguese almond cultivars assessed by RAPD and ISSR markers Plant Cell Rep. 22: 71–78

    Article  PubMed  CAS  Google Scholar 

  • Martins M, Sarmento D, Oliveira MM, (2004) Genetic stability of micropropagated almond plantlets, as assessed by RAPD and ISSR markers Plant Cell Rep. 23: 492–496

    Article  PubMed  CAS  Google Scholar 

  • Morgante M, Hanafey M, Powell W, (2002) Microsatellites are preferentially associated with nonrepetitive DNA in plant genomes Nat. Genet. 30: 194–200

    Article  PubMed  CAS  Google Scholar 

  • Murashige T, Skoog F, (1962) A revised medium for rapid growth and bioassays with tobacco tissue cultures Physiol. Plant. 15: 473–497

    Article  CAS  Google Scholar 

  • Orton TJ, (1985) Genetic instability during embryogenic cloning of celery Plant Cell Tiss. Org. Cult. 4: 159–169

    Article  Google Scholar 

  • Palombi MA, Damiano C, (2002) Comparison between RAPD and SSR molecular markers in detecting genetic variation in kiwifruit (Actinidia deliciosa A. Chev) Plant Cell Rep. 20: 1061–1066

    Article  CAS  Google Scholar 

  • Porebski S, Bailey GL, Baum BR, (1997) Modifications of a CTAB DNA extraction protocol for plant containing high polysaccharide and polyphenol components Plant Mol. Biol. Rep. 15: 8–15

    CAS  Google Scholar 

  • Rani V, Raina SN, (2000) Genetic fidelity of organized meristem-derived micropropagated plants: a critical reappraisal In Vitro Cell Dev. Biol. Plant. 36: 319–330

    Article  CAS  Google Scholar 

  • Rani V, Singh KP, Shiran M, Nandy S, Goel S, Devarumanth RM, Sreenath HL, Raina SN, (2000) Evidence for new nuclear and mitrochondrial genome organizations among high frequency somatic embryogenesis-derived plants of allotetraploid Coffea arabica L. (Rubiaceae) Plant Cell Rep. 19: 1013–1020

    Article  CAS  Google Scholar 

  • Rani V, Parida A, Raina SN, (2001) Chromosome number dependent genome size and RAPD fingerprinting diagonostics for genetic integrity of enhanced axillary branching-derived plants of ten forest tree species Acta. Hortic. 560: 531–534

    CAS  Google Scholar 

  • Rival A, Bertrand L, Beale T, Combes M-C, Trouslot P, Leshermes P, (1998) Suitability of RAPD analysis for detection of somaclonal variation in oil palm (Elaeis guineensis Jacq.) Plant Breed. 117: 73–76

    Article  Google Scholar 

  • Rohlf FJ, (2000) NTSYS-pc: numerical taxonomy and multivariate analysis system Exeter Software, Setauket New York, USA

    Google Scholar 

  • Sahijram L, Soneji JR, Bollamma KT, (2003) Analyzing somaclonal variation in micropropagated bananas (Musa spp.) In Vitro Cell Dev. Biol. Plant. 39: 551–556

    Article  Google Scholar 

  • Simmonds NW, (1996) Banans, Musa (Musaceae) In: Smartt J, Simmonds NW, (eds) Evolution of Crop Plants Longman Scientific and Technical UK (pp. 370–375)

    Google Scholar 

  • Smith MK, (1988) A review of factors influencing the genetic stability of micropropagated bananas Fruits 43: 219–223

    Google Scholar 

  • Vendrame WA, Kochert G, Wetzstein HY, (1999) AFLP analysis of variation in pecan somatic embryos Plant Cell Rep. 18: 853–857

    Article  CAS  Google Scholar 

  • Vuylsteke D, (1998) Field performance of banana micropropagules and somaclones In: Jain SM, Brar DS, Ahloowalia BS, (eds) Somaclonal Variation and Induced Mutation in Crop Improvement Kluwer, Academic Publishers Dordrecht (pp. 219–231)

    Google Scholar 

  • Vuylsteke D, Swennen R, De Langhe E, (1991) Somaclonal variation in plantains (Musa spp, AAB group) derived from shoot-tip culture Fruits 46: 429–439

    Google Scholar 

  • Wallner E, Weising K, Rompf R, Kahl G, Kopp B, (1996) Oligonucleotide and RAPD analysis of Achillea species: characterization and long-term monitoring of micropropagated clones Plant Cell Rep. 15: 647–652

    Article  CAS  Google Scholar 

  • Wang Z, Weber JL, Zhong G, Tanksley SD, (1994) Survey of plant short-tandem DNA repeats Theor. Appl. Genet. 88: 1–6

    CAS  Google Scholar 

  • Williams JGK, Kubelik AR, Livak KJ, Rafalski JA, Tingey SV, (1990) DNA polymorphisms amplified by arbitrary primers are useful as genetic markers Nucleic Acids Res. 18: 6531–6535

    Article  PubMed  CAS  Google Scholar 

  • Wong WC, (1986) In vitro propagation of banana (Musa spp.): initiation, proliferation and development of shoot-tip cultures on defined media Plant Cell Tiss. Org. Cult. 6: 159–166

    Article  Google Scholar 

  • Zietkiewicz E, Rafalski A, Labuda D, (1994) Genome fingerprinting by simple sequence repeats (SSR)-anchored polymerase chain reaction amplification Genomics 20: 176–183

    Article  PubMed  CAS  Google Scholar 

Download references

Acknowledgements

Authors thankfully acknowledge the Council of Scientific and Industrial Research (CSIR) and Department of Biotechnology (DBT), Government of India, India for financial support.

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Correspondence to S.C. Roy.

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Ray, T., Dutta, I., Saha, P. et al. Genetic stability of three economically important micropropagated banana (Musa spp.) cultivars of lower Indo-Gangetic plains, as assessed by RAPD and ISSR markers. Plant Cell Tiss Organ Cult 85, 11–21 (2006). https://doi.org/10.1007/s11240-005-9044-4

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