Skip to main content
Log in

Isolation and characterization of bacteria from soil contaminated with diesel oil and the possible use of these in autochthonous bioaugmentation

  • Original paper
  • Published:
World Journal of Microbiology and Biotechnology Aims and scope Submit manuscript

Abstract

Two bacterial species (isolates N and O) were isolated from a paddy soil microcosm that had been artificially contaminated with diesel oil to which extrinsic Pseudomonas aeruginosa strain WatG, had been added exogenously. One bacterial species (isolate J) was isolated from a similar soil microcosm that had been biostimulated with Luria–Bertani (LB) medium. Isolates N and O, which were tentatively identified as Stenotrophomonas sp. and Ochromonas sp., respectively, by sequencing of their 16 S rRNA genes had no ability to degrade diesel oil on their own in any liquid medium. When each strain was cocultivated with P. aeruginosa strain WatG in liquid mineral salts medium (MSM) containing 1% diesel oil, isolate N enhanced the degradation of diesel oil by P. aeruginosa strain WatG, but isolate O inhibited it. In contrast, isolate J, which was tentatively identified as a Rhodococcus sp., degraded diesel oil contained not only in liquid LB and MSM, but also in paddy soil microcosms supplemented with LB medium. The bioaugmentation capacity of isolate J in soil microcosms contaminated with diesel oil was much higher than that of P. aeruginosa strain WatG. The possibility of using isolate J for autochthonous bioaugmentation is discussed.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Fig. 1
Fig. 2
Fig. 3
Fig. 4
Fig. 5

Similar content being viewed by others

Abbreviations

DGGE:

Denaturing gradient gel electrophoresis

LB:

Luria–Bertani medium

LB-BS:

LB-added biostimulation

MSM:

Mineral salts medium

WatG-BA:

P. aeruginosa strain WatG-added bioaugmentation

TPH:

Total petroleum hydrocarbons

References

  • Boopathy R (2000) Formation of aniline as a transient metabolite during the metabolism of tetryl by a sulfate-reducing bacterial consortium. Curr Microbiol 40:190–193

    Article  CAS  Google Scholar 

  • Bouwer E, Durant N, Wilson L, Zhang W, Cunningham A (1994) Degradation of xenobiotics compounds in situ: capabilities and limits. FEMS Microbiol Rev 15:307–317

    Article  CAS  Google Scholar 

  • Breslow N (1970) A general Kruskal–Wallis test for comparing K-samples subject to unequal patterns of censorship. Biometrika 57:579–594

    Article  Google Scholar 

  • Briones AM, Okabe S, Umemiya Y, Ramsing N-B, Reichardt W, Okuyama H (2003) Ammonia-oxidizing bacteria on root biofilms and their possible contribution to N use efficiency of different rice cultivars. Plant Soil 250:335–348

    Article  CAS  Google Scholar 

  • Chang JI, Lin C-C (2006) A study of storage tank accidents. J Loss Prevent 19:51–59

    Article  Google Scholar 

  • D’Annibale A, Rosetto F, Leonardi V, Federici F, Petruccioli M (2006) Role of autochthonous filamentous fungi in bioremediation of a soil historically contaminated with aromatic hydrocarbons. Appl Environ Microbiol 72:28–36

    Article  CAS  Google Scholar 

  • Daniel R (2005) The metagenomics of soil. Nat Rev Microbiol 3:470–478

    Article  CAS  Google Scholar 

  • Dean SM, Jin Y, Cha DK, Wilson SV, Radosevich M (2001) Phenanthrene degradation in soils co-inoculated with phenanthrene-degrading and biosurfactant-producing bacteria. J Environ Qual 30:1126–1133

    Article  CAS  Google Scholar 

  • Gentry TJ, Rensing C, Pepper IL (2004) New approaches for bioaugmentation as a remediation technology. Crit Rev Environ Sci Technol 34:447–494

    Article  CAS  Google Scholar 

  • Margesin R, Schinner F (2001) Biodegradation and bioremediation of hydrocarbons in extreme environments. Appl Microbiol Biotechnol 56:650–663

    Article  CAS  Google Scholar 

  • Marmur J (1961) A procedure for the isolation of deoxyribonucleic acid from microorganisms. J Mol Biol 3:208–218

    Article  CAS  Google Scholar 

  • Rahman KSM, Rahman TJ, Kourkoutas Y, Petsas I, Marchant R, Banat IM (2003) Enhanced bioremediation of n-alkane in petroleum sludge using bacterial consortium amended with rhamnolipid and micronutrients. Bioresour Technol 90:159–168

    Article  CAS  Google Scholar 

  • Sambrook J, Russell DW (2001) Molecular cloning: a laboratory manual, 3rd edn, vol 1. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, N. Y., pp 1.31–1.42. ISBN 0-87969-577-3

    Google Scholar 

  • Singer AC, van der Gast CJ, Thompson IP (2005) Perspectives and vision for strain selection in bioaugmentation. Trends Biotechnol 23:74–77

    Article  CAS  Google Scholar 

  • Ueno A (2006) Studies on petroleum degradation in Pseudomonas aeruginosa strain WatG-added soil microcosms and their bacterial community change analysis by molecular biological approach. Doctoral thesis of Hokkaido University. Sapporo, Japan

    Google Scholar 

  • Ueno A, Hasanuzzaman M, Yumoto I, Okuyama H (2006a) Verification of degradation of n-alkane in diesel oil by Pseudomonas aeruginosa strain WatG in soil microcosms. Curr Microbiol 52:182–185

    Article  CAS  Google Scholar 

  • Ueno A, Ito Y, Yamamoto Y, Yumoto I, Okuyama H (2006b) Bacterial community changes in diesel-oil-contaminated soil microcosms biostimulated with Luria–Bertani medium or bioaugmented with a petroleum-degrading bacterium, Pseudomonas aeruginosa strain WatG. J Basic Microbiol 46:310–317

    Article  CAS  Google Scholar 

  • Van Hamme JD, Singh A, Ward OP (2003) Recent advances in petroleum microbiology. Microbiol Mol Biol Rev 67:503–549

    Article  CAS  Google Scholar 

  • Vogel TM (1996) Bioaugmentation as a soil bioremediation approach. Curr Opin Biotechnol 7:311–316

    Article  CAS  Google Scholar 

  • Wongsa P, Tanaka M, Ueno A, Hasanuzzaman M, Yumoto I, Okuyama H (2004) Isolation and characterization of novel strains of Pseudomonas aeruginosa and Serratia marcescens possessing high efficiency to degrade gasoline, kerosene, diesel oil, and lubricating oil. Curr Microbiol 49:415–422

    Article  CAS  Google Scholar 

Download references

Acknowledgements

This work was partly supported by Grant-in-Aid for Scientific Research ((C) no. 17510061) from the Ministry of Education, Science, Sports, and Culture of Japan and grants from Northern Advancement Center for Science & Technology, the Sumitomo Foundation and Institute for Fermentation, Osaka (IFO).

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Hidetoshi Okuyama.

Rights and permissions

Reprints and permissions

About this article

Cite this article

Ueno, A., Ito, Y., Yumoto, I. et al. Isolation and characterization of bacteria from soil contaminated with diesel oil and the possible use of these in autochthonous bioaugmentation. World J Microbiol Biotechnol 23, 1739–1745 (2007). https://doi.org/10.1007/s11274-007-9423-6

Download citation

  • Received:

  • Accepted:

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1007/s11274-007-9423-6

Keywords

Navigation