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Epigenetics, a mode for plants to respond to abiotic stresses

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Frontiers in Biology

Abstract

Epigenetics has been becoming a hot topic in recent years. It can be mechanisms that regulate gene expression without changing DNA base sequence. In plants epigenetic regulation has been implicated to be a very important phenomenon and mechanism for the regulation of responses to environmental stresses. Environmental signals induce various epigenetic modifications in the genome, and these epigenetic modifications might likely be inherited to the next generation that behaves with enhanced ability to tolerate stresses. This review highlights recent advances in the study of epigenetics in plant stress responses.

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References

  • Ascenzi R, Gantt J S (1997). A drought-stress-inducible histone gene in Arabidopsis thaliana is a member of a distinct class of plant linker histone variants. Plant Mol Biol, 34(4): 629–641

    Article  PubMed  CAS  Google Scholar 

  • Aufsatz W, Mette MF, van der Winden J, Matzke M, Matzke A J (2002). HDA6, a putative histone deacetylase needed to enhance DNA methylation induced by double-stranded RNA. EMBO J, 21(24): 6832–6841

    Article  PubMed  CAS  Google Scholar 

  • Bartee L, Malagnac F, Bender J (2001). Arabidopsis cmt3 chromomethylase mutations block non-CG methylation and silencing of an endogenous gene. Genes Dev, 15(14): 1753–1758

    Article  PubMed  CAS  Google Scholar 

  • Borsani O, Zhu J, Verslues P E, Sunkar R, Zhu J K (2005). Endogenous siRNAs derived from a pair of natural cis-antisense transcripts regulate salt tolerance in Arabidopsis. Cell, 123(7): 1279–1291

    Article  PubMed  CAS  Google Scholar 

  • Camporeale G, Oommen A M, Griffin J B, Sarath G, Zempleni J (2007). K12-biotinylated histone H4 marks heterochromatin in human lymphoblastoma cells. J Nutr Biochem, 18(11): 760–768

    Article  PubMed  CAS  Google Scholar 

  • Chen L T, Luo M, Wang Y Y, Wu K (2010). Involvement of Arabidopsis histone deacetylase HDA6 in ABA and salt stress response. J Exp Bot, 61(12): 3345–3353

    Article  PubMed  CAS  Google Scholar 

  • Chinnusamy E, Zhu J K (2009). Epigenetic regulation of stress responses in plants. Curr Opin Plant Biol, 12(2): 1–7

    Article  Google Scholar 

  • Choi C S, Sano H (2007). Abiotic-stress induces demethylation and transcriptional activation of a gene encoding a glycerophosphodiesterase-like protein in tobacco plants. Mol Genet Genomics, 277(5): 589–600

    Article  PubMed  CAS  Google Scholar 

  • Dalmay T, Hamilton A, Rudd S, Angell S, Baulcombe D C (2000). An RNA-dependent RNA polymerase gene in Arabidopsis is required for posttranscriptional gene silencing mediated by a transgene but not by a virus. Cell, 101(5): 543–553

    Article  PubMed  CAS  Google Scholar 

  • Dyachenko O V, Zakharchenko N S, Shevchuk T V, Bohnert H J, Cushman J C, Buryanov Y I (2006). Effect of hypermethylation of CCWGG sequences in DNA of Mesembryanthemum crystallinum plants on their adaptation to salt stress. Biochemistry (Mosc), 71(4): 461–465

    Article  CAS  Google Scholar 

  • Finnegan E J, Kovac K A (2000). Plant DNA methyltransferases. Plant Mol Biol, 43(2–3): 189–201

    Article  PubMed  CAS  Google Scholar 

  • Fu W Q, Wu K Q, Duan J (2007). Sequence and expression analysis of histone deacetylases in rice. Biochem Biophys Res Commun, 356(4): 843–850

    Article  PubMed  CAS  Google Scholar 

  • Hashida S N, Uchiyama T, Martin C, Kishima Y, Sano Y, Mikami T (2006). The temperature-dependent change in methylation of the Antirrhinum transposon Tam3 is controlled by the activity of its transposase. Plant Cell, 18(1): 104–118

    Article  PubMed  CAS  Google Scholar 

  • Henderson I R, Jacobsen S E (2007). Epigenetic inheritance in plants. Nature, 447(7143): 418–424

    Article  PubMed  CAS  Google Scholar 

  • Johnson L, Cao X, Jacobsen S (2002). Interplay between two epigenetic marks. DNA methylation and histone H3 lysine 9 methylation. Curr Biol, 12(16): 1360–1367

    Article  PubMed  CAS  Google Scholar 

  • Kim J M, To T K, Ishida J, Morosawa T, Kawashima M, Matsui A, Toyoda T, Kimura H, Shinozaki K, Seki M (2008). Alterations of lysine modifications on the histone H3 N-tail under drought stress conditions in Arabidopsis thaliana. Plant Cell Physiol, 49(10): 1580–1588

    Article  PubMed  CAS  Google Scholar 

  • Kovarik A, Koukalova B, Bezdek M, Opatrn Z (1997). Hypermethylation of tobacco heterochromatic loci in response to osmotic stress. Theor Appl Genet, 95(1-2): 301–306

    Article  Google Scholar 

  • Labra M, Ghiani A, Citterio S, Sgorbati S, Sala F, Vannini C, Ruffini-Castiglione M, Bracale M (2002). Analysis of cytosine methylation pattern in response to water deficit in pea root tips. Plant Biol (Stuttgart), 4(6): 694–699

    Article  CAS  Google Scholar 

  • Lister R, O’Malley R C, Tonti-Filippini J, Gregory B D, Berry C C, Millar A H, Ecker J R (2008). Highly integrated single-base resolution maps of the epigenome in Arabidopsis. Cell, 133(3): 523–536

    Article  PubMed  CAS  Google Scholar 

  • Martienssen R (1998). Transposons, DNA methylation and gene control. Trends Genet, 14(7): 263–264

    Article  PubMed  CAS  Google Scholar 

  • Mourrain P, Béclin C, Elmayan T, Feuerbach F, Godon C, Morel J B, Jouette D, Lacombe A M, Nikic S, Picault N, Rémoué K, Sanial M, Vo T A, Vaucheret H (2000). Arabidopsis SGS2 and SGS3 genes are required for posttranscriptional gene silencing and natural virus resistance. Cell, 101(5): 533–542

    Article  PubMed  CAS  Google Scholar 

  • Nathan D, Ingvarsdottir K, Sterner D E, Bylebyl G R, Dokmanovic M, Dorsey J A, Whelan K A, Krsmanovic M, Lane W S, Meluh P B, Johnson E S, Berger S L (2006). Histone sumoylation is a negative regulator in Saccharomyces cerevisiae and shows dynamic interplay with positive-acting histone modifications. Genes Dev, 20(8): 966–976

    Article  PubMed  CAS  Google Scholar 

  • Navarro L, Dunoyer P, Jay F, Arnold B, Dharmasiri N, Estelle M, Voinnet O, Jones J D G (2006). A plant miRNA contributes to antibacterial resistance by repressing auxin signaling. Science, 312(5772): 436–439

    Article  PubMed  CAS  Google Scholar 

  • Papa C M, Springer N M, Muszynski M G, Meeley R, Kaeppler S M (2001). Maize chromomethylase Zea methyltransferase2 is required for CpNpG methylation. Plant Cell, 13(8): 1919–1928

    Article  PubMed  CAS  Google Scholar 

  • Phillips J R, Dalmay T, Bartels D (2007). The role of small RNAs in abiotic stress. FEBS Lett, 581(19): 3592–3597

    Article  PubMed  CAS  Google Scholar 

  • Probst A V, Fagard M, Proux F, Mourrain P, Boutet S, Earley K, Lawrence R J, Pikaard C S, Murfett J, Furner I, Vaucheret H, Mittelsten Scheid O (2004). Arabidopsis histone deacetylase HDA6 is required for maintenance of transcriptional gene silencing and determines nuclear organization of rDNA repeats. Plant Cell, 16(4): 1021–1034

    Article  PubMed  CAS  Google Scholar 

  • Qiu S P, Huang J, Pan L J, Wang M M, Zhang H S (2006). Salt induces expression of RH3.2A, encoding an H3.2-type histone H3 protein in rice (Oryza sativa L.). Yi Chuan Xue Bao, 33(9): 833–840

    PubMed  CAS  Google Scholar 

  • Schauer S E, Jacobsen S E, Meinke DW, Ray A (2002). DICER-LIKE1: blind men and elephants in Arabidopsis development. Trends Plant Sci, 7(11): 487–491

    Article  PubMed  CAS  Google Scholar 

  • Scippa G S, Griffiths A, Chiatante D, Bray E A (2000). The H1 histone variant of tomato, H1-S, is targeted to the nucleus and accumulates in chromatin in response to water-deficit stress. Planta, 211(2): 173–181

    Article  PubMed  CAS  Google Scholar 

  • Shen W H (2001). NtSET1, a member of a newly identified subgroup of plant SET-domain-containing proteins, is chromatin-associated and its ectopic overexpression inhibits tobacco plant growth. Plant J, 28(4): 371–383

    Article  PubMed  CAS  Google Scholar 

  • Sokol A, Kwiatkowska A, Jerzmanowski A, Prymakowska-Bosak M (2007). Up-regulation of stress-inducible genes in tobacco and Arabidopsis cells in response to abiotic stresses and ABA treatment correlates with dynamic changes in histone H3 and H4 modifications. Planta, 227(1): 245–254

    Article  PubMed  CAS  Google Scholar 

  • Sridha S, Wu K (2006). Identification of AtHD2C as a novel regulator of abscisic acid responses in Arabidopsis. Plant J, 46(1): 124–133

    Article  PubMed  CAS  Google Scholar 

  • Sridhar V V, Kapoor A, Zhang K, Zhu J, Zhou T, Hasegawa P M, Bressan R A, Zhu J K (2007). Control of DNA methylation and heterochromatic silencing by histone H2B deubiquitination. Nature, 447(7145): 735–738

    Article  PubMed  CAS  Google Scholar 

  • Steward N, Ito M, Yamaguchi Y, Koizumi N, Sano H (2002). Periodic DNA methylation in maize nucleosomes and demethylation by environmental stress. J Biol Chem, 277(40): 37741–37746

    Article  PubMed  CAS  Google Scholar 

  • Stockinger E J, Mao Y, Regier M K, Triezenberg S J, Thomashow M F (2001). Transcriptional adaptor and histone acetyltransferase proteins in Arabidopsis and their interactions with CBF1, a transcriptional activator involved in cold-regulated gene expression. Nucleic Acids Res, 29(7): 1524–1533

    Article  PubMed  CAS  Google Scholar 

  • Sunkar R, Chinnusamy V, Zhu J, Zhu J K (2007). Small RNAs as big players in plant abiotic stress responses and nutrient deprivation. Trends Plant Sci, 12(7): 310–309

    Article  Google Scholar 

  • Sunkar R, Kapoor A, Zhu J K (2006). Posttranscriptional induction of two Cu/Zn superoxide dismutase genes in Arabidopsis is mediated by downregulation of miR398 and important for oxidative stress tolerance. Plant Cell, 18(8): 2051–2065

    Article  PubMed  CAS  Google Scholar 

  • Sunkar R, Zhu J K (2004). Novel and stress-regulated microRNAs and other small RNAs from Arabidopsis. Plant Cell, 16(8): 2001–2019

    Article  PubMed  CAS  Google Scholar 

  • Tsuji H, Saika H, Tsutsumi N, Hirai A, Nakazono M (2006). Dynamic and reversible changes in histone H3-Lys4 methylation and H3 acetylation occurring at submergence-inducible genes in rice. Plant Cell Physiol, 47(7): 995–1003

    Article  PubMed  CAS  Google Scholar 

  • Vaistij F E, Jones L, Baulcombe D C (2002). Spreading of RNA targeting and DNA methylation in RNA silencing requires transcription of the target gene and a putative RNA-dependent RNA polymerase. Plant Cell, 14(4): 857–867

    Article  PubMed  CAS  Google Scholar 

  • Wada Y (2005). Physiological functions of plant DNA methyltransferases. Plant Biotechnol, 22: 71–80

    Article  CAS  Google Scholar 

  • Wada Y, Ohya H, Yamaguchi Y, Koizumi N, Sano H (2003). Preferential de novo methylation of cytosine residues in non-CpG sequences by a domains rearranged DNA methyltransferase from tobacco plants. J Biol Chem, 278(43): 42386–42393

    Article  PubMed  CAS  Google Scholar 

  • Yoder J A, Walsh C P, Bestor T H (1997). Cytosine methylation and the ecology of intragenomic parasites. Trends Genet, 13(8): 335–340

    Article  PubMed  CAS  Google Scholar 

  • Zemach A, Grafi G (2003). Characterization of Arabidopsis thaliana methyl-CpG-binding domain (MBD) proteins. Plant J, 34(5): 565–572

    Article  PubMed  CAS  Google Scholar 

  • Zhang K, Sridhar V V, Zhu J, Kapoor A, Zhu J K (2007). Distinctive core histone post-translational modification patterns in Arabidopsis thaliana. PLoS ONE, 2(11): e1210

    Article  PubMed  Google Scholar 

  • Zhou C, Zhang L, Duan J, Miki B, Wu K (2005). HISTONE DEACETYLASE19 is involved in jasmonic acid and ethylene signaling of pathogen response in Arabidopsis. Plant Cell, 17(4): 1196–1204

    Article  PubMed  CAS  Google Scholar 

  • Zhu J K (2008). Epigenome sequencing comes of age. Cell, 133(3): 395–397

    Article  PubMed  CAS  Google Scholar 

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Correspondence to Weihua Qiao or Liumin Fan.

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Qiao, W., Fan, L. Epigenetics, a mode for plants to respond to abiotic stresses. Front. Biol. 6, 477–481 (2011). https://doi.org/10.1007/s11515-011-1128-4

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  • DOI: https://doi.org/10.1007/s11515-011-1128-4

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