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Naming and outline of Dothideomycetes–2014 including proposals for the protection or suppression of generic names

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Abstract

Article 59.1, of the International Code of Nomenclature for Algae, Fungi, and Plants (ICN; Melbourne Code), which addresses the nomenclature of pleomorphic fungi, became effective from 30 July 2011. Since that date, each fungal species can have one nomenclaturally correct name in a particular classification. All other previously used names for this species will be considered as synonyms. The older generic epithet takes priority over the younger name. Any widely used younger names proposed for use, must comply with Art. 57.2 and their usage should be approved by the Nomenclature Committee for Fungi (NCF). In this paper, we list all genera currently accepted by us in Dothideomycetes (belonging to 23 orders and 110 families), including pleomorphic and non-pleomorphic genera. In the case of pleomorphic genera, we follow the rulings of the current ICN and propose single generic names for future usage. The taxonomic placements of 1261 genera are listed as an outline. Protected names and suppressed names for 34 pleomorphic genera are listed separately. Notes and justifications are provided for possible proposed names after the list of genera. Notes are also provided on recent advances in our understanding of asexual and sexual morph linkages in Dothideomycetes. A phylogenetic tree based on four gene analyses supported 23 orders and 75 families, while 35 families still lack molecular data.

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References

  • Adler A, Yaniv I, Samra Z, Yacobovich J, Fisher S, Avrahami G, Levy I (2006) Exserohilum: an emerging human pathogen. Eur J Clin Microbiol Infect Dis 25(4):247–253

    CAS  PubMed  Google Scholar 

  • Alcorn JL, Irwin JAG (1987) Acrocalymma medicaginis gen. et sp. nov. causing root and crown rot of Medicago sativa in Australia. Trans Br Mycol Soc 88:63–167

    Google Scholar 

  • Alves JL, Woudenberg JHC, Duarte LL, Crous PW, Barreto RW (2013) Reappraisal of the genus Alternariaster (Dothideomycetes). Persoonia 31:77–85

    CAS  PubMed Central  PubMed  Google Scholar 

  • Aptroot A (1995) Redisposition of some species excluded from Didymosphaeria (Ascomycotina). Nova Hedwigia 60(3–4):325–379

    Google Scholar 

  • Ariyawansa HA, Camporesi E, Thambugala KM, Mapook A, Kang JC, Alias SA, Chukeatirote E, Thines M, Mckenzie EHC, Hyde KD (2014a) Confusion surrounding Didymosphaeria — phylogenetic and morphological evidence suggest Didymosphaeriaceae is not a distinct family. Phytotaxa 176(1):102–119

    Google Scholar 

  • Ariyawansa HA, Kang JC, Alias SA, Chukeatirote E, Hyde KD (2014b) Pyrenophora. Mycosphere 5(2):351–362

    Google Scholar 

  • Ariyawansa HA, Tanaka K, Thambugala KM, Phookamsak R, Tian Q, Camporesi E, Hongsanan S, Monkai J, Wanasinghe DN, Chukeatirote E, Kang JC, Xu JC, McKenzie EHC, Jones EBG, Hyde KD (2014c) A molecular phylogenetic reappraisal of the Didymosphaeriaceae (=Montagnulaceae). Fungal Diver 68:69–104

  • Ariyawansa HA, Thambugala KM, Kang JC, Alias SA, Chukeatirote E, Hyde KD (2014d) Towards a natural classification of Dothideomycetes 2: The genera Cucurbidothis, Heterosphaeriopsis, Hyalosphaera, Navicella and Pleiostomellina (Dothideomycetes incertae sedis). Phytotaxa 176(1):7–17

    Google Scholar 

  • Ariyawansaa HA, Kang JC, Alias SA, Chukeatirote E, Hyde KD (2013) Towards a natural classification of Dothideomycetes: The genera Dermatodothella, Dothideopsella, Grandigallia, Hysteropeltella and Gloeodiscus (Dothideomycetes incertae sedis). Phytotaxa 147(2):35–47

    Google Scholar 

  • Aveskamp MM, De Gruyter J, Woudenberg JHC, Verkley GJ, Crous PW (2010) Highlights of the Didymellaceae: A polyphasic approach to characterize Phoma and related pleosporalean genera. Stud Mycol 65:1–60

    CAS  PubMed Central  PubMed  Google Scholar 

  • Barr ME (1968) The Venturiaceae in North America. Can J Bot 46(6):799–864

    Google Scholar 

  • Barr ME (1996) Planistromellaceae, a new family in the Dothideales. Mycotaxon 60:433–442

    Google Scholar 

  • Batista AC, Bezerra JL, Barros TT (1969) Publ. Inst. Micol. Recife 637:5

  • Batzer JC, Arias MM, Harrington TC, Gleason ML, Groenewald JZ, Crous PW (2008) Four species of Zygophiala (Schizothyriaceae, Capnodiales) are associated with the sooty blotch and flyspeck complex on apple. Mycologia 100(2):246–258

    CAS  PubMed  Google Scholar 

  • Bensch K, Braun U, Groenewald JZ, Crous PW (2012) The genus Cladosporium. Stud Mycol 72:1–401

    CAS  PubMed Central  PubMed  Google Scholar 

  • Berkeley MJ (1857) Introduction to cryptogamic botany. Bailliere, London, 604pp

    Google Scholar 

  • Bills GF, Collado J, Ruibal C, Peláez F, Platas G (2004) Hormonema carpetanum sp. nov., a new lineage of dothideaceous black yeasts from Spain. Stud Mycol 50:149–157

    Google Scholar 

  • Boehm EWA, Mugambi GK, Miller AN, Huhndorf SM, Marincowitz S, Spatafora JW, Schoch CL (2009) A molecular phylogenetic reappraisal of the Hysteriaceae, Mytilinidiaceae and Gloniaceae (Pleosporomycetidae, Dothideomycetes) with keys to world species. Stud Mycol 64:49–83

    CAS  PubMed Central  PubMed  Google Scholar 

  • Boerema GH (1997) Contributions towards a monograph of Phoma (coelomycetes) – V. Subdivision of the genus in sections. Mycotaxon 64:321–333

    Google Scholar 

  • Boonmee S, Ko Ko TW, Chukeatirote E, Hyde KD, Chen H, Lei C, McKenzie EHC, Jones EBG, Rampai K, Bahkali AH (2012) Kirschsteiniotheliaceae fam. nov. Mycologia 104:698–714

    PubMed  Google Scholar 

  • Boonmee S, Bhat JD, Maharachchikumbura SSN, Hyde KD (2014a) Clavatispora thailandica gen. et sp. nov., a novel taxon of Venturiales (Dothideomycetes) from Thailand. Phytotaxa 176(1):92–101

    Google Scholar 

  • Boonmee S, Rossman AY, Liu JK, Li WJ, Dai DQ, Bhat JD, Jones EBG, McKenzie EHC, Xu JC, Hyde KD (2014b) Tubeufiales, ord. nov., integrating sexual and asexual generic names. Fungal Divers 68:239–298

  • Braun U, Crous PW, Dugan F, Groenewald JZ, de Hoog GS (2003) Phylogeny and taxonomy of cladosporium-like hyphomycetes, including Davidiella gen. nov., the teleomorph of Cladosporium s. str. Mycol Prog 2:3–18

    Google Scholar 

  • Braun U, Nakashima C, Crous PW (2013) Cercosporoid fungi (Mycosphaerellaceae) 1. Species on othe fungi, Pteridophyta and Gymnospermae. IMA Fungus 4:265–345

    PubMed Central  PubMed  Google Scholar 

  • Briquet J, Flahault C, Harms H, Rendle AB (1906) Règles Internationales de la Nomenclature Botanique adoptées par le Congrès International de Botanique de Vienne 1905. Gustav Fischer, Jena

    Google Scholar 

  • Campbell J, Ferrer A, Raja HA, Sivichai S, Shearer CA (2007) Phylogenetic relationships among taxa in theJahnulales inferred from 18S and 28S nuclear ribosomal DNA sequences. Can J Bot 85:873–882

  • Cannon PF, Kirk PM (2000) The philosophy and practicalities of amalgamating anamorph and teleomorph concepts. Stud Mycol 45:19–25

    Google Scholar 

  • Carmichael JW, Kendrick WB, Conners IL, Sigler L (1980) Genera of Hyphomycetes. Universityof Alberta Press, Alberta, p 386

    Google Scholar 

  • Carnegie AJ, Keane PJ (2003) Variation in severity of target spot, caused by Aulographina eucalypti, in a Eucalypt species and provenance trial in Victoria. Aust Plant Pathol 32(3):393–402

    Google Scholar 

  • Cheewangkoon R, Groenewald JZ, Summerell BA, Hyde KD, To-anun C, Crous PW (2009) Myrtaceae, a cache of fungal biodiversity. Persoonia 23:55–85

    CAS  PubMed Central  PubMed  Google Scholar 

  • Chomnunti P, Schoch CL, Aguirre-Hudson B, KoKo TW, Hongsanan S, Jones EBG, Kodsueb R, Phookamsak R, Chukeatirote E, Bahkali AH, Hyde KD (2011) Capnodiaceae. Fungal Divers 51:103–134

    PubMed Central  PubMed  Google Scholar 

  • Chung KR (2011) Elsinoë fawcettii and Elsinoë australis: the fungal pathogens causing citrus scab. Mol Plant Pathol 12(2):123–135

    CAS  PubMed  Google Scholar 

  • Cortinas MN, Burgess T, Dell B, Xu D, Crous PW, Wingfield BD, Wingfield MJ (2006) First record of Colletogloeopsis zuluensis comb. nov., causing stem canker of Eucalyptus in China. Mycol Res 110:229–236

    PubMed  Google Scholar 

  • Crous PW, Kendrick WB (1994) Arnaudiella eucalyptorum sp. nov. (Dothideales, Ascomycetes) and its hyphomycetos anamorph Xenogliocladiopsis gen. nov. from Eucalyptus leaf litter in South Africa. Can J Bot 72:59–64

    Google Scholar 

  • Crous PW, Groenewald JZ, Wingfield MJ, Aptroot A (2003) The value of ascospore septation in separating Mycosphaerella from Sphaerulina in the Dothideales: a Saccardoan myth ? Sydowia 55(2):136–152

    Google Scholar 

  • Crous PW, Groenewald JZ, Mansilla JP, Hunter GC, Wingfield MJ (2004) Phylogenetic reassessment of Mycosphaerella spp. and their anamorphs occurring on Eucalyptus. Stud Mycol 50:195–214

    Google Scholar 

  • Crous PW, Braun U, Groenewald JZ (2007) Mycosphaerella is polyphyletic. Stud Mycol 58:1–32

    CAS  PubMed Central  PubMed  Google Scholar 

  • Crous PW, Summerell BA, Carnegie AJ, Wingfield MJ, Hunter GC, Burgess TI, Andjic V, Barber PA, Groenewald JZ (2009) Unravelling Mycosphaerella: do you believe in genera? Persoonia 23:99–118

    CAS  PubMed Central  PubMed  Google Scholar 

  • Crous PW, Summerell BA, Swart L, Denman S, Taylor JE, Bezuidenhout CM, Palm ME, Marincowitz S, Groenewald JZ (2011) Fungal pathogens of Proteaceae. Persoonia 27:20–45

    CAS  PubMed Central  PubMed  Google Scholar 

  • Crous PW, Braun U, Hunter GC, Wingfield MJ, Verkley GJM, Shin H-D, Nakashima C, Groenewald JZ (2012) Phylogenetic lineages in Pseudocercospora. Stud Mycol 75:37–114

    PubMed Central  Google Scholar 

  • Crous PW, Wingfield MJ, Guarro J, Cheewangkoon R, van der Bank M et al (2013) Fungal Planet description sheets: 154–213. Persoonia 31:188–296

    CAS  PubMed Central  PubMed  Google Scholar 

  • Crous PW, Shivas RG, Quaedvlieg W, van der Bank M, Zhang Y, Summerell BA, Guarro J, Wingfield MJ, Wood AR, Alfenas AC, Braun U, Cano-Lira JF, García D, Marin-Felix Y, Alvarado P, Andrade JP, Armengol J, Assefa A, den Breeÿen A, Camele I, Cheewangkoon R, De Souza JT, Duong TA, Esteve-Raventós F, Fournier J, Frisullo S, García-Jiménez J, Gardiennet A, Gené J, Hernández-Restrepo M, Hirooka Y, Hospenthal DR, King A, Lechat C, Lombard L, Mang SM, Marbach PAS, Marincowitz S, Marin-Felix Y, Montaño-Mata NJ, Moreno G, Perez CA, Pérez Sierra AM, Robertson JL, Roux J, Rubio E, Schumacher RK, Stchigel AM, Sutton DA, Tan YP, Thompson EH, van der Linde E, Walker AK, Walker DM, Wickes BL, Wong PTW, Groenewald JZ (2014) Fungal Planet Description Sheets: 214–280. Persoonia 32:184–306

    CAS  PubMed Central  PubMed  Google Scholar 

  • Da Cunha KC, Sutton DA, Fothergill AW, Cano J, Gené J, Madrid H, de Hoog S, Crous PW, Guarro J (2012) Diversity of Bipolaris species in clinical samples in the United States and their antifungal susceptibility profiles. J Clin Microbiol 50:4061–4066

    PubMed Central  PubMed  Google Scholar 

  • Da Cunha KC, Sutton DA, Fothergill AW, Gené J, Cano J, Madrid H, de Hoog GS, Crous PW, Guarro J (2013) In vitro antifungal susceptibility and molecular identity of 99 clinical isolates of the opportunistic fungal genus Curvularia. Diagn Microbiol Infect Dis 76:168–174

    PubMed  Google Scholar 

  • Dai DQ, Bahkali AH, Bhat DJ, Xiao YP, Chukeatirote E, Zhao RL, Mckenzie EHC, Xu JC, Hyde KD (2014a) Towards a natural classification of Dothideomycetes 3: The genera Muellerites, Trematosphaeriopsis, Vizellopsis and Yoshinagella (Dothideomycetes incertae sedis). Phytotaxa 176(1):18–27

    Google Scholar 

  • Dai DQ, Boonmee S, Tian Q, Xiao YP, Bhat JD, Chukeatirote E, Alias SA, Zhao RL, Wang Y, Hyde KD (2014b) Englerulaceae (Dothideomycetes). Phytotaxa 176(1):139–155

    Google Scholar 

  • Dai DQ, Wijayawardene NN, Bhat DJ, Chukeatirote E, Zhao RL, Wang Y, Bahkali AH, Hyde KD (2014c) The Phylogenetic Placement of Eriosporella bambusicola sp. nov. in Capnodiales. Cryptogam Mycol 35(1):41–49

    Google Scholar 

  • Damm U, Verkley GJM, Crous PW, Fourie PH, Haegi A, Riccioni L (2008) Novel Paraconiothyrium species on stone fruit trees and other woody hosts. Persoonia 20:9–17

    CAS  PubMed Central  PubMed  Google Scholar 

  • de Gruyter J, Aveskamp MM, Woudenberg JHC, Verkley GJM, Groenewald JZ, Crous PW (2009) Molecular phylogeny of Phoma and allied anamorph genera: Towards a re-classification of the Phoma complex. Mycol Res 113:508–519

    PubMed  Google Scholar 

  • de Gruyter J, Woudenberg JHC, Aveskamp MM, Verkley GJM, Groenewald JZ, Crous PW (2010) Systematic reappraisal of species in Phoma section Paraphoma, Pyrenochaeta and Pleurophoma. Mycologia 102:1066–1081

    PubMed  Google Scholar 

  • de Gruyter J, Woudenberg JHC, Aveskamp MM, Verkley GJM, Groenewald JZ, Crous PW (2013) Redisposition of Phoma-like anamorphs in Pleosporales. Stud Mycol 75:1–36

    PubMed Central  PubMed  Google Scholar 

  • de Hoog GS, Hijwegen T, Batenburg-van der Vegte WH (1991) A new species of Dissoconium. Mycol Res 95:679–682

    Google Scholar 

  • De Wit PJGM, van der Burgt A, Ökmen B, Stergiopoulos I, Abd-Elsalam K, Aerts AL, Bahkali AHA, Beenen HG, Chettri P, Cox MP, Datema E, de Vries RP, Dhillon B, Ganley AR, Griffiths S, Guo Y, Hamelin RC, Henrissat B, Kabir MS, Karimi Jashni M, Kema G, Klaubauf S, Lapidus A, Levasseur A, Lindquist E, Mehrabi R, Ohm RA, Owen TJ, Salamov A, Schwelm A, Schijlen E, Sun H, van den Burg HA, van Ham RCHJ, Zhang S, Goodwin SB, Grigoriev IV, Collemare J, Bradshaw RE (2012) The genomes of the fungal plant pathogens Cladosporium fulvum and Dothistroma septosporum reveal adaptation to different hosts and lifestyles but also signatures of common ancestry. PLoS Genet 8:e1003088

    PubMed Central  PubMed  Google Scholar 

  • Dissanayake AJ, Jayawardena RS, Boonmee S, Thambugala KM, Senanayake IC, Tain Q, Mapook A, Yan JY, Li YM, Li XH, Chukeatirote E, Hyde KD (2014) The status of family Myriangiaceae (Dothideomycete). Phytotaxa 176(1):219–237

    Google Scholar 

  • Doilom M, Liu JK, Jaklitsch WM, Ariyawansa H, Wijayawardene NN, Chukeatirote E, Zhang M, McKenzie EHC, Geml J, Voglmayr H, Hyde KD (2013) An outline of the family Cucurbitariaceae. Sydowia 65(1):167–192

    Google Scholar 

  • Egidi E, de Hoog GS, Isola D, Onofri S, Quaedvlieg W, de Vries M, Verkley GJM, Stielow JB, Zucconi L, Selbmann L (2014) Phylogeny and taxonomy of meristematic rock-inhabiting black fungi in the Dothideomycetes based on multi-locus phylogenies. Fungal Divers 65:127–165

    Google Scholar 

  • Ellis MB (1971) Demattaceous Hyphomycetes. Commonwealth Mycological Institute, Kew

    Google Scholar 

  • Ellis MB (1976) More Dematiaceous Hyphomycetes. Commonwealth Mycological Institute, Kew

    Google Scholar 

  • Ellwood SR, Liu Z, Syme RA, Lai Z, Hane JK, Keiper F, Moffat CS, Oliver RP, Friesen TL (2010) A first genome assembly of the barley fungal pathogen Pyrenophora teres f. teres. Genome Biol 11:R109

    PubMed Central  PubMed  Google Scholar 

  • Giraldo A, Gené J, Sutton DA, Madrid H, Cano J, Crous PW, Guarro J (2014) Phylogenetic circumscription of Arthrographis (Eremomycetaceae, Dothideomycetes). Persoonia 32:102–114

    CAS  PubMed Central  PubMed  Google Scholar 

  • Glienke C, Pereira OL, Stringari D, Fabris J, Kava-Cordeiro V, Galli-Terasawa L, Cunnington J, Shivas RG, Groenewald JZ, Crous PW (2011) Endophytic and pathogenic Phyllosticta species, with reference to those associated with Citrus Black Spot. Persoonia 26:47–56

    CAS  PubMed Central  PubMed  Google Scholar 

  • Goodwin SB, Dunkle LD, Zismann VL (2001) Phylogenetic analysis of Cercospora and Mycosphaerella based on the internal transcribed spacer region of ribosomal DNA. Phytopathol 91:648–658

    CAS  Google Scholar 

  • Groenewald JZ, Nakashima C, Nishikawa J, Shin H-D, Park J-H, Jama AN, Groenewald M, Braun U, Crous PW (2013) Species concepts in Cercospora: spotting the weeds among the roses. Stud Mycol 75:115–170

    CAS  PubMed Central  PubMed  Google Scholar 

  • Hall T (2004) BioEdit v. 7.0.1. Department of Microbiology, North Carolina State University. Available at www.mbio.ncsu.edu/ BioEdit/bioedit.html

  • Hawksworth DL (2012) Managing and coping with names of pleomorphic fungi in a period of transition. Mycosphere 3(2): 143–155; IMA Fungus 3 (1): 15–24

  • Hillis DM, Bull JJ (1993) An empirical test of bootstrapping as a method for assessing confidence in phylogenetic analysis. Syst Biol 42:182

    Google Scholar 

  • Höhnel F von (1909) Fragmente zur Mykologie: VII. Mitteilung (Nr. 289 bis 353). Sitzungsberichte der Kaiserlichen Akademie der Wissenschaften Math.-naturw. Klasse Abt. I. 118: 813–904

  • Hongsanan S, Bahkali AH, McKenzie EHC, Chukeatirote E, Hyde KD (2014a) Trichopeltinaceae (Dothideomycetes), an earlier name for Brefeldiellaceae, with a new species of Trichopeltina. Phytotaxa 176(1):270–282

  • Hongsanan S, Chomnunti P, Crous PW, Chukeatirote E, Hyde KD (2014b) Introducing Chaetothyriothecium, a new genus of Microthyriales. Phytotaxa 161(2):157–164

    Google Scholar 

  • Hongsanan S, Li YM, Liu JK, Hofmann T, Piepenbring M, Jones EBG, Bhat JD, Boonmee S, Doliom M, Singtripop C, Tian Q, Mapook A, Zeng X, Xu JC, Wu XH, Hyde KD (2014c) Revision of Asterinales. Fungal Divers 68:1–68

  • Hosagoudar VB (2003) Studies on foliicolous fungi – XIII a new genus and a new species. Zoos' Print J 18(8):1159–1162

    Google Scholar 

  • http://www.indexfungorum.org/names/names.asp

  • Huelsenbeck JP, Ronquist F (2001) MRBAYES: Bayesian inference of phylogenetic trees. Bioinform 17:754–755

    CAS  Google Scholar 

  • Hughes SJ (1976) Sooty moulds. Mycologia 68(4):693–820

    Google Scholar 

  • Hughes SJ (1978) New Zeland Fungi 25. Miscellaneous species. NZ J Bot 16:311–370

    Google Scholar 

  • Hughes SJ (2000) Antennulariella batistae n. sp. and its Capnodendron and Antennariella synanamorphs, with notes on Capnodium capsuliferum. Can J Bot 78(9):1215–1226

    Google Scholar 

  • Hyde KD (1997) The genus Roussoëlla, including two new species from palms in Cuyabeno, Ecuador. Mycol Res 101:609–616

    Google Scholar 

  • Hyde KD, Eriksson OE, Yue JZ (1996) Roussoëlla, an ascomycete genus of uncertain relationships with a Cytoplea anamorph. Mycol Res 100:1522–1528

    Google Scholar 

  • Hyde KD, McKenzie EHC, KoKo TW (2011) Towards incorporating anamorphic fungi in a natural classification – checklist and notes for 2010. Mycosphere 2:1–88

  • Hyde KD, Jones EBG, Lui J-K, Ariyawansa H, Boehm E et al (2013) Families of Dothideomycetes. Fungal Divers 63:1–313

    Google Scholar 

  • Hyde KD, Nilsson RH, Alias SA, Ariyawansa HA, Blair JE, Cai L, et al. (2014) One stop shop: backbones trees for important pytopathogenic genera: I. Fungal Divers 67:21–125

  • Jayawardena RS, Ariyawansa HA, Singtripop C, Li YM, Yan JY, Li XH, Nilthong S, Hyde KD (2014) A re-assessment of Elsinoaceae (Myriangiales, Dothideomycetes). Phytotaxa 176(1):120–138

    Google Scholar 

  • Kang JC, Kong RYC, Hyde KD (1998) Studies on the Amphisphaeriales l. Amphisphaeriaceae (sensu stricto) and its phylogenetic relationships inferred from 5.8S rDNAand ITS2 sequences. Fungal Divers 1:147–157

    Google Scholar 

  • Kendrick B (ed) (1979) The Whole Fungus: the sexual-asexual synthesis. 2 vols. National Museums of Canada, Ottawa

    Google Scholar 

  • Kirk PM, Cannon PF, Minter DW, Stalpers JA (2008) Ainsworth & Bisby's Dictionary of the Fungi, 10th edn. CABI, Wallingford

    Google Scholar 

  • Kirk PM, Stalpers JA, Braun U, Crous PW, Hansen K et al (2013) A without-prejudice list of generic names of fungi for protection under the International Code of Nomenclature for algae, fungi and plants. IMA Fungus 4:381–443

    PubMed Central  PubMed  Google Scholar 

  • Lawrence DP, Park MS, Pryor BM (2012) Nimbya and Embellisia revisited, with nov. comb. for Alternaria celosiae and A. perpunctulata. Mycol Prog 11:799–815

    Google Scholar 

  • Leonard KJ, Suggs EG (1974) Setosphaeria prolata, the ascigerous state of Exserohilum prolatum. Mycologia 66(2):281–297

    Google Scholar 

  • Li HY, Sun GY, Zhai XR, Batzer JC, Mayfield DA, Crous PW, Groenewald JZ, Gleason ML (2012) Dissoconiaceae associated with sooty blotch and flyspeck on fruits in China and the United States. Persoonia 28:113–125

    PubMed Central  PubMed  Google Scholar 

  • Li WJ, Bhat JD, Hyde KD, Wang Y (2014) Towards a natural classification of Dothideomycetes 4: The genera Bryopelta, Bryorella, Bryosphaeria, Lophiosphaerella and Maireella (Dothideomycetes incertae sedis). Phytotaxa 176(1):28–41

    Google Scholar 

  • Liu JK, Phookamsak R, Jones EBG, Zhang Y, Ko-Ko TW, Hu HL, Boonmee S, Doilom M, Chukeatirote E, Bahkali AH, Wang Y, Hyde KD (2011) Astrosphaeriella is polyphyletic, with species in Fissuroma gen. nov., and Neoastrosphaeriella gen. nov. Fungal Divers 51:135–154

    Google Scholar 

  • Liu JK, Phookamsak R, Doilom M, Wikee S, Li Y-M et al (2012) Towards a natural classification of Botryosphaeriales. Fungal Divers 57:149–210

    Google Scholar 

  • Liu JK, Phookamsak P, Dai DQ, Tanaka K, Jones EBG, Xu JC, Chukeatirote E, Hyde KD (2014) Roussoellaceae, a new pleosporalean family to accommodate the genera Neoroussoella gen. nov., Roussoella and Roussoellopsis. Phytotaxa 181:1–33

  • Lumbsch HT, Huhndorf SM (2010) Myconet Volume 14. Part one. Outline of Ascomycota 2009. Part Two. Notes on Ascomycete Systematics. Nos. 4751–5113. Fieldiana Life Earth Sci 1:1–64

    Google Scholar 

  • Machouart M, Samerpitak K, de Hoog GS, Gueidan C (2014) A multigene phylogeny reveals that Ochroconis belongs to the family Sympoventuriaceae (Venturiales, Dothideomycetes). Fungal Divers 65:77–88

    Google Scholar 

  • Malloch D, Sigler L (1988) The Eremomycetaceae (Ascomycotina). Can J Bot 66:1929–1932

    Google Scholar 

  • Manamgoda DS, Cai L, McKenzie EHC, Crous PW, Madrid H, Chukeatirote E, Shivas RG, Tan YP, Hyde KD (2012) A phylogenetic and taxonomic re-evaluation of the Bipolaris-Cochliobolus-Curvularia complex. Fungal Divers 56:131–144

    Google Scholar 

  • Manning VA, Pandelova I, Dhillon B, Wilhelm LJ, Goodwin SB, Berlin AM, Figueroa M, Freitag M, Hane JK, Henrissat B, Holman WH, Kodira CD, Martin J, Oliver RP, Robbertse B, Schackwitz W, Schwartz DC, Spatafora JW, Turgeon BG, Yandava C, Young S, Zhou S, Zeng Q, Grigoriev IV, Ma LJ, Ciuffetti LM (2013) Comparative genomics of a plant-pathogenic fungus, Pyrenophora tritici-repentis, reveals transduplication and the impact of repeat elements on pathogenicity and population divergence. G3 (Bethesda) 3(1):41–63

    CAS  Google Scholar 

  • Markovskaja S, Kačergius A, Treigienė A (2011) Occurrence of new alien pathogenic fungus Mycosphaerella dearnessii in Lithuania. Bot Lith 17(1):29–37

    Google Scholar 

  • Matsushima T (2003) Matsushima Mycological Memoirs 10:1–214. (Originally published on CD-ROM in PDF format Oct. 2001; effectively published 10 Feb. 2003 through distribution of two hard-copies.)

  • Mchau GRA, Crous PW, Phillips AJL (1998) Molecular characterization of some Elsinoë isolates from leguminous hosts. Plant Pathol 47:773–779

    CAS  Google Scholar 

  • McNeill J, Barrie FR. Buck WR, Demoulin V, Greuter W, Hawksworth DL, Herendeen PS, Knapp S, Marhold K, Prado J, Prud'homme van Reine WF, Smith GE, Wiersema JH, Turland NJ (eds). 2012 International Code of Nomenclature for algae, fungi, and plants (Melbourne Code) adopted by the Eighteenth International Botanical Congress Melbourne, Australia, July 2011. [Regnum Vegetabile No. 154.] Königsten: Koeltz Scientific Books

  • Minnis AM, Kennedy AH, Grenier DB, Palm ME, Rossman AY (2012) Phylogeny and taxonomic revision of the Planistromellaceae including its coelomycetous anamorphs: contributions towards a monograph of the genus Kellermania. Persoonia 29:11–28

    CAS  PubMed Central  PubMed  Google Scholar 

  • Monkai J, Liu JK, Boonmee S, Chomnunti P, Chukeatirote E, Jones EBG, Wang Y, Hyde KD (2013) Planistromellaceae (Botryosphaeriales). Cryptogam Mycol 34:45–77

    Google Scholar 

  • Monterio FT, Vieira BS, Barreto RB (2003) Curvularia lunata and Phyllachora sp.: two fungal pathogens of the grassy weed Hymenachne amplexicaulis from Brazil. Aust Plant Pathol 32:449–453

    Google Scholar 

  • Moore RT (1962) Hiospira, a new genus of the Helicosporae. Trans Br Mycol Soc 45:143–146

    Google Scholar 

  • Muggia L, Hafellner J, Wirtz N (2008) The sterile microfilamentous lichenized fungi Cystocoleus ebeneus and Racodium rupestre are relatives of plant pathogens and clinically important dothidealean fungi. Mycol Res 112:50–56

    CAS  PubMed  Google Scholar 

  • Nannizzi A (1934) Repertorio sistematico dei miceti dell' uomo e degli animali. 4: 1–557

  • Nilsson RH, Hyde KD, Pawłowska J, Ryberg M, Tedersoo L et al (2014) Improving ITS sequence data for identification of plant pathogenic fungi. Fungal Divers 67:1–9

    Google Scholar 

  • Nylander JAA (2004) MrModeltest 2.0. Program distributed by the author. Evolutionary Biology Centre, Uppsala University

  • Ohm RA, Feau N, Henrissat B, Schoch CL, Horwitz BA, Barry KW, Condon BJ, Copeland AC, Dhillon B, Glaser F, Hesse CN, Kosti I, LaButti K, Lindquist EA, Lucas S, Salamov AA, Bradshaw RE, Ciuffetti L, Hamelin RC, Kema GHJ, Lawrence C, Scott JA, Spatafora JW, Turgeon BG, de Wit PGJM, Zhong S, Goodwin SB, Grigoriev IV (2012) Diverse life styles and strategies of plant pathogenesis encoded in the genomes of eighteen Dothideomycetes Fungi. PLoS Pathog 8(12):e1003037

    CAS  PubMed Central  PubMed  Google Scholar 

  • Page RDM (1996) Tree View: an application to display phylogenetic trees on personal computers. Comput Appl Bios 12:357–358

    CAS  Google Scholar 

  • Peever TL, Barve MP, Stone LJ, Kaiser WJ (2007) Evolutionary relationships among Ascochyta species infecting wild and cultivated hosts in the legume tribes Cicereae and Vicieae. Mycologia 99:59–77

    CAS  PubMed  Google Scholar 

  • Pereira-Carvalho RC, Inácio CA, Dianese JC (2010) Plurispermiopsis: a new capnodiceous genus from the Brazilian Cerrado. Mycologia 102(5):1163–1166

    CAS  PubMed  Google Scholar 

  • Pérez-Ortega S, Suija A, Crespo A, de los Ríos A (2014) Lichenicolous fungi of the genus Abrothallus (Dothideomycetes: Abrothallales ordo nov.) are sister to the predominantly aquatic Jahnulales. Fungal Divers 64:295–304

    Google Scholar 

  • Petrak F (1952) Fungi Beltsvillensis. III. Sydowia 6(1–4):5–16

    Google Scholar 

  • Petrak F (1953) Cyclopeltis n. gen., eine neue Gattung der Polystomellaceen. Sydowia 7(5–6):370–374

    Google Scholar 

  • Petrak F (1954) Anthracostroma n. gen., eine neue Gattung der dothidealen Pyrenomyzeten. Sydowia 8(1–6):96–99

    Google Scholar 

  • Petrak F (1958) Singeriella n. gen., eine neue, mit den Entopeltaceen verwandte Gattung aus den Hochgebirgen Perus. Sydowia 12(1–6):252–257

    Google Scholar 

  • Petrak F (1962) Mykologische Bemerkungen. Sydowia 15:204–217

    Google Scholar 

  • Petrak F, Sydow H (1927) Die Gattungen der Pyrenomyzeten, Sphaeropsideen und Melanconieen. Beih. Rep. spec. nov. regniveg. 42: 1–551

  • Phillips AJL, Alves A, Pennycook SR, Johnston PR, Ramaley A, Akulov A, Crous PW (2008) Resolving the phylogenetic and taxonomic status of dark-spored teleomorph genera in the Botryosphaeriaceae. Persoonia 21:29–55

    CAS  PubMed Central  PubMed  Google Scholar 

  • Phillips AJL, Alves A, Abdollahzadeh J, Slippers B, Wingfield MJ, Groenewald JZ, Crous PW (2013) The Botryosphaeriaceae: genera and species known from culture. Stud Mycol 76:51–167

    CAS  PubMed Central  PubMed  Google Scholar 

  • Phookamsak R, Liu JK, Chukeatirote E, McKenzie EHC, Hyde KD (2013) Phylogeny and morphology of Leptosphaerulina saccharicola sp. nov. and Pleosphaerulina oryzae and relationships with Pithomyces. Cryptogam Mycol 34(4):303–319

    Google Scholar 

  • Phookamsak R, Liu JK, McKenzie EHC, Manamgoda DS, Chatpapamon C, Ariyawansa HA, Thambugala KM, Dai DQ, Camporesi E, Chukeatirote E, Wijayawardene NN, Mortimer PE, Xu JC, Hyde KD (2014) Revision of Phaeosphaeriaceae. Fungal Divers 68:159–238

  • Quaedvlieg W, Kema GHJ, Groenewald JZ, Verkley GJM, Seifbarghi S, Razavi M, Mirzadi Gohari A, Mehrabi R, Crous PW (2011) Zymoseptoria gen. nov.: a new genus to accommodate septoria-like species occurring on graminicolous hosts. Persoonia 26:57–69

    CAS  PubMed Central  PubMed  Google Scholar 

  • Quaedvlieg W, Groenewald JZ, de Jesús Y-MM, Crous PW (2012) DNA barcoding of Mycosphaerella species of quarantine importance to Europe. Persoonia 29:101–115

    CAS  PubMed Central  PubMed  Google Scholar 

  • Quaedvlieg W, Verkley GJM, Shin H-D, Barreto RW, Algenas AC, Swart WJ, Groenewald JZ, Crous PW (2013) Sizing up Septoria. Stud Mycol 75:307–390

    CAS  PubMed Central  PubMed  Google Scholar 

  • Quaedvlieg W, Binder M, Groenewald JZ, Summerell BA, Carnegie AJ, Burgess TI, Crous PW (2014) Introducing the consolidated species concept to resolve species in the Teratosphaeriaceae. Persoonia 33:1–40

    Google Scholar 

  • Ramaley AW (1993) New fungi from Yucca: Planistromella yuccifoliorum, gen. et sp. nov., its anamorph, Kellermania yuccifoliorum, sp. nov., and Planistromella uniseptata, sp. nov., the teleomorph of Kellermania yuccigena. Mycotaxon 47:259–274

    Google Scholar 

  • Ramaley AW (1995) New fungi from Dasylirion (Agavaceae). Aliso 14(2):152

    Google Scholar 

  • Ramaley AW (1996) Comminutispora gen. nov. and its Hyphospora gen. nov. anamorph. Mycologia 88(1):132–136

    Google Scholar 

  • Ramaley AW (2005) The connection of Dothidotthia aspera (Botryosphaeriaceae) to a hyphomycetous anamorphic fungus, Thyrostroma negundinis. Mycotaxon 94:127–132

    Google Scholar 

  • Ramaley AW, Barr ME (1997) Syncarpella ribis sp. nov. and its anamorph, Syntholus ribis gen. et sp. nov. Mycotaxon 65:499–506

    Google Scholar 

  • Rannala B, Yang Z (1996) Probability distribution of molecular evolutionary trees: a new method of phylogenetic inference. J Mol Evol 43:304–311

    CAS  PubMed  Google Scholar 

  • Rossman AY, Manamgoda DS, Hyde KD (2013) Proposal to conserve the name Bipolaris against Cochliobolus (Ascomycota: Pleosporales: Pleosporaceae). Taxon 62(6):1331–1332

    Google Scholar 

  • Roux C (1986) Leptosphaerulina chartarum sp. nov., the teleomorph of Pithomyces chartarum. Trans Br Mycol Soc 86(2):319–323

    Google Scholar 

  • Saccardo PA (1880) Conspectus generum fungorum Italiae inferiorum nempe ad Sphaeropsideas, Melanconieas et Hyphomyceteas pertinentium systemate sporologico dispositorum. Michelia 2(6):1–38

    Google Scholar 

  • Saccardo PA (1904) De Diagnostica et nomenclatura mycologica, Admonita quaedam. Annales Mycologici 2:195–198. [English translation by Clements FE (1904) J Mycol10: 109–112]

  • Samuels GJ, Rogers JD (1986) Botryohypoxylon gen.nov. and its anamorph, Iledon gen. nov. Mycotaxon 25(2):629–637

    Google Scholar 

  • Schoch CL, Shoemaker RA, Seifert KA, Hambleton S, Spatafora JW, Crous PW (2006) A multigene phylogeny of Dothideomycetes using four nuclear loci. Mycologia 98:1041–1052

    CAS  PubMed  Google Scholar 

  • Schoch CL, Crous PW, Groenewald JZ, Boehm EWA, Burgess TI, de Gruyter J et al (2009) A class-wide phylogenetic assessment of Dothideomycetes. Stud Mycol 64(1):1–15

    CAS  PubMed Central  PubMed  Google Scholar 

  • Seifert K, Morgan-Jones G, Gams W, Kendrick B (2011) The Genera of Hyphomycetes. CBS-KNAW Fungal Biodiversity Centre Utrecht, The Netherlands

    Google Scholar 

  • Shoemaker RA (1962) Drechslera Ito. Can J Bot 40:809–936

    Google Scholar 

  • Shoemaker RA, Babcock CE, Irwin JAG (1991) Massarina walkeri n. sp., the teleomorph of Acrocalymma medicaginis from Medicago sativa contrasted with Leptosphaeria pratensis, L. weimeri n. sp., and L. viridella. Can J Bot 69(3):569–573

    Google Scholar 

  • Silvestro D, Michalak I (2010) raxmlGUI: a graphical front-end for RAxML http://sourceforge.net/projects/raxmlgui/. Accessed August 2010

  • Simmons EG (1986) Alternaria themes and variations (22–26). Mycotaxon 25(1):287–308

    Google Scholar 

  • Simmons EG (2002) Alternaria themes and variations (305–309). Lewia/Alternaria revisited. Mycotaxon 83:127–145

    Google Scholar 

  • Simmons EG (2007) Alternaria: an identification manual. [CBS Biodiversity Series no. 6.] Utrecht: CBS-KNAW Fungal Biodiversity Centre

  • Simon UK, Groenewald JZ, Crous PW (2009) Cymadothea trifolii, an obligate biotrophic leaf parasite of Trifolium, belongs to Mycosphaerellaceae as shown by nuclear ribosomal DNA analyses. Persoonia 22:49–55

    CAS  PubMed Central  PubMed  Google Scholar 

  • Siu K, Lzumi AK (2004) Phaeohyphomycosis caused by Coniothyrium. Cutis 73:127–130

    PubMed  Google Scholar 

  • Sivanesan A (1983) Studies on ascomycetes. Trans Br Mycol Soc 81(2):313–332

    Google Scholar 

  • Sivanesan A (1984) The Bitunicate Ascomycetes and their Anamorphs. J. Cramer, Vaduz

    Google Scholar 

  • Sivanesan A (1996) Corynesporasca caryotae gen. et sp. nov. with a Corynespora anamorph, and the family Corynesporascaceae. Mycol Res 100(7):783–788

    Google Scholar 

  • Sivanesan A, Hsieh WH (1989) Kentingia and Setocampanula, two new genera. Mycol Res 93:83–90

  • Sivichai S, Sri-indrasudhi V, Jones EBG (2011) Jahnula aquatic and its anamorph Xylomyces chlamydosporus on submerged wood in Thailand. Mycotaxon 116:137–142

    Google Scholar 

  • Slippers B, Crous PW, Denman S, Coutinho TA, Wingfield BD, Wingfield MJ (2004) Combined multiple gene genealogies and phenotypic characters differentiate several species previously identified as Botryosphaeria dothidea. Mycologia 96(1):83–101

    CAS  PubMed  Google Scholar 

  • Slippers B, Boissin E, Phillips AJL, Groenewald JZ, Wingfield MJ et al (2013) Phylogenetic lineages in the Botryosphaeriales: A systematic and evolutionary framework. Stud Mycol 76:31–49

    CAS  PubMed Central  PubMed  Google Scholar 

  • Speer EO (1986) A propos de champignons du Brésil III. Mytilidion resinae sp. nov. (Hysteriales) et sa forme conidienne, Camaroglobulus resinae gen. et spec. nov. (Sphaeropsidales). Bulletin de la Société Mycologique de France 102: 97–100

  • Spooner BM, Kirk PM (1982) Taxonomic notes on Excipularia and Scolicosporium. Trans Br Mycol Soc 78:247–257

    Google Scholar 

  • Stamatakis A (2006) RAxML-VI-HPC: Maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinforma 22:2688–2690

    CAS  Google Scholar 

  • Stergiopoulos I, Kourmpetis YAI, Slot JC, Bakker FT, De Wit JPGM, Rokas A (2012) In silico characterization and molecular evolutionary analysis of a novel superfamily of fungal effector proteins. Mol Biol Evol 29(11):3371–3384

    CAS  PubMed  Google Scholar 

  • Stewart EL, Liu Z, Crous PW, Szabo L (1999) Phylogenetic relationships among some cercosporoid anamorphs of Mycosphaerella based on rDNA sequence analysis. Mycol Res 103:1491–1499

    CAS  Google Scholar 

  • Stukenbrock EH, Quaedvlieg W, Javan-Nikhah M, Zala M, Crous PW, McDonald BA (2012) Zymoseptoria ardabiliae and Z. pseudotritici, two progenitor species of the Septoria tritici leaf blotch fungus Z. tritici (synonym: Mycosphaerella graminicola). Mycologia 104(6):1397–1407

    PubMed  Google Scholar 

  • Su YY, Cai L (2012) Polyphasic characterisation of three new Phyllosticta spp. Persoonia 28:76–84

    CAS  PubMed Central  PubMed  Google Scholar 

  • Subramaniam CV (1972) Pirozynskia, a new hyphomycete genus. Curr Sci 41(19):711–712

    Google Scholar 

  • Subramanian CV, Sekar G (1982) Thaxteriellopsis lingicola and its Moorella anamorph. Plant Sci 91(1):1–7

    Google Scholar 

  • Suetrong S, Boonyue N, Pang KL, Ueapattanakit J, Klaysuban A, Sri-Inddrasutdhi V, Sivichai S, Jones EBG (2011) A taxonomic revision and phylogenetic reconstruction of the Jahnulales (Dothideomycetes), and the new family Manglicolaceae. Fungal Divers 51:163–188

    Google Scholar 

  • Suetrong S, Rungjindamai N, Sommai S, Rung-Areerate P, Sommrithipol S, Jones EBG (2014) Wiesneriomyces a new lineage of Dothideomycetes (Ascomycota) basal to Tubeufiales. Phytotaxa 176(1):283–297

    Google Scholar 

  • Sutton BC (1980) The Coelomycetes: fungi imperfecti with pycnidia, acervuli and stromata. Commonwealth Mycological Institute, Kew

    Google Scholar 

  • Sutton BC (1984) Notes on Titaea (Hyphomycetes). Trans Br Mycol Soc 83:399–413

    Google Scholar 

  • Swart L, Crous PW, Kang JC, Mchau GRA, Pascoe I, Palm ME (2001) Differentiation of species of Elsinoe associated with scab disease of proteaceae based morphology, symptomatology, and ITS sequence phylogeny. Mycologia 93(2):366–379

    Google Scholar 

  • Swofford DL (2002) PAUP: phylogenetic analysis using parsimony, version 4.0 b10. Sinauer Associates, Sunderland

    Google Scholar 

  • Takuya S, Takao T (2012) Exserohilum neoregeliae sp. nov., a new pathogen of Neoregelia carolinae. Mycotaxon 118:213–218

  • Tamura K, Peterson D, Peterson N, Stecher G, Nei M, Kumar S (2011) MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary dfistance, and maximum parsimony methods. Mol Biol Evol 28:2731–2739

    CAS  PubMed Central  PubMed  Google Scholar 

  • Tanaka K, Harada Y (2005) Bambusicolous fungi in Japan (4): a new combination, Astrosphaeriella aggregata. Mycoscience 46:114–118

    Google Scholar 

  • Tanaka K, Ooki Y, Hatakeyama S, Harada Y, Barr ME (2005) Pleosporales in Japan (5): Pleomassaria, Asteromassaria, and Splanchnonema. Mycoscience 46(4):248–260

    Google Scholar 

  • Tanaka K, Hirayama K, Yonezawa H, Hatakeyama S, Harada Y, SanoT ST, Hosoya T (2009) Molecular taxonomy of bambusicolous fungi: Tetraplosphaeriaceae, a new pleosporalean family with Tetraploa-like anamorphs, and notes on the phylogeny of selected species from bamboo. Stud Mycol 64:175–209

    CAS  PubMed Central  PubMed  Google Scholar 

  • Tanaka K, Mel'nik VA, Kamiyama M, Hirayama K, Shirouzu T (2010) Molecular phylogeny of two coelomycetous fungal genera with stellate conidia, Prosthemium and Asterosporium, on Fagales trees. Botany 88:1057–1071

    CAS  Google Scholar 

  • Taylor JE (2011) One fungus=one name: DNA and fungal nomenclature twenty years after PCR. IMA Fungus 2:113–120

    PubMed Central  PubMed  Google Scholar 

  • Thambugala KM, Ariyawansa HA, Li YM, Boonmee S, Hongsanan S, Tian Q, Singtripop C, Bhat JD, Camporesi E, Jayawardena R, Liu ZY, Xu JC, Chukeatirote E, Hyde KD (2014a) Dothideales . Fungal Divers 68:105–158

  • Thambugala KM, Ariyawansa HA, Liu ZY, Chukeatirote E, Hyde KD (2014b) Towards a natural classification of Dothideomycetes 6: The genera Dolabra, Placostromella, Pleosphaerellula, Polysporidiella and Pseudotrichia (Dothideomycetes incertae sedis). Phytotaxa 176(1):55–67

    Google Scholar 

  • Thambugala KM, Singtripop C, Chunfang Y, Mckenzie EHC, Liu ZY, Chukeatirote E, Hyde KD (2014c) Towards a natural classification of Dothideomycetes 7: The genera Allosoma, Austropleospora, Dangeardiella, Griggsia and Karschia (Dothideomycetes incertae sedis). Phytotaxa 181:34–46

  • Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG (1997) The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25(24):4876

    CAS  PubMed Central  PubMed  Google Scholar 

  • Tian Q, Chomnunti P, Bhat JD, Alias SA, Mortimer PE, Hyde KD (2014) Towards a natural classification of Dothideomycetes 5: The genera Ascostratum, Chaetoscutula, Ceratocarpia, Cystocoleus, and Colensoniella (Dothideomycetes incertae sedis). Phytotaxa 176(1):42–54

    Google Scholar 

  • Tsang CH, Chan JFW, Trendell-Smith NJ, Ngan AHY, Ling IWH, Lau SKP, Woo PCY (2014) Subcutaneous phaeohyphomycosis in a patient with Ig G4-related sclerosing disease caused by a novel ascomycete, Hongkongmyces pedis gen. et sp. nov.: first report of human infection associated with the family Lindgomycetaceae. Med Mycol 52(7):736–747

    PubMed  Google Scholar 

  • Tsuneda A, Davey ML, Tsuneda I, Currah RS (2010) Two new dothideomycetous endocoidial genera from declining larch. Botany 88:471–487

    Google Scholar 

  • Verkley GJM, Priest MJ (2000) Septoria and similar coelomycetous anamorphs of Mycosphaerella. Stud Mycol 45:123–128

    Google Scholar 

  • Verkley GJM, da Silva M, Wicklow DT, Crous PW (2004) Paraconiothyrium, a new genus to accommodate the mycoparasite Coniothyrium minitans, anamorphs of Paraphaeosphaeria, and four new species. Stud Mycol 50:323–335

    Google Scholar 

  • Verkley GJM, Quaedvlieg W, Crous PW (2013) A new approach to species delimitation in Septoria. Studies in Mycology 75:213–305

  • Verkley GJM, Renfurm R, Göker M, Stielow JB (2014) Novel genera and species of coniothyrium-like fungi in Montagnulaceae (Ascomycota). Persoonia 32:25–51

    CAS  PubMed Central  PubMed  Google Scholar 

  • von Arx JA, Müller E (1975) A re–evaluation of the bitunicate Ascomycetes with keys to families and genera. Stud Mycol 9:1–159

    Google Scholar 

  • Walker J, Sutton BC (1974) Dilophia Sacc. and Dilophospora Desm. Trans Br Mycol Soc 62(2):231–241

    Google Scholar 

  • Wanasinghe DN, Jones EBG, Camporesi E, Boonmee S, Karunarathna SC, Thines M, Mortimer PE, Xu J, Hyde KD (2014) Dematiopleospora mariae gen. sp. nov., from Ononis spinosain Italy. Crypto Mycol 35(2):105–117

    Google Scholar 

  • Wang LY, Lioa HL, Bau HJ, Chung KR (2009) Characterization of pathogenic variants of Elsinoë fawcettii of citrus implies the presence of new pathotypes and cryptic species in Florida. Can J Plant Pathol 31(1):28–37

    Google Scholar 

  • Wei CZ, Harada Y, Katumoto K (1997) Pseudodidymella fagi gen. et sp. nov. and its hyphomycete anamorph Pycnopleiospora fagi gen. et sp.nov. on Fagus crenata in Japan. Mycologia 89(3):494–502

    Google Scholar 

  • Wijayawardene DNN, McKenzie EHC, Hyde KD (2012) Towards incorporating anamorphic fungi in a natural classification – checklist and notes for 2011. Mycosphere 3(2):157–228

    Google Scholar 

  • Wijayawardene NN, Camporesi E, Song Y, Dai DQ, Bhat DJ, Mckenzie EHC, Chukeatirote E, Mel'nik VA, Wang Y, Hyde KD (2013) Multi-gene analyses reveal taxonomic placement of Scolicosporium minkeviciusiiin Phaeosphaeriaceae (Pleosporales). Cryptogam Mycol 34(4):357–366

    Google Scholar 

  • Wijayawardene NN, Bhat DJ, Hyde KD, Camporesi E, Wikee S, Chethana KWT, Tangthirasunun N, Wang Y (2014a) Camarosporium sensu stricto in Pleosporinae, Pleosporales with two new species. Phytotaxa 183(1):16–26

  • Wijayawardene NN, Camporesi E, Bhat DJ, Song Y, Chethana KWT, Chukeatirote E, Wang Y, Hyde KD (2014b) Macrodiplodiopsis in Lophiostomataceae, Pleosporales. Phytotaxa 176(1):192–200

  • Wijayawardene NN, Hyde KD, Bhat DJ, Camporesi E, Schumacher RK, Chethana KWT, Wikee S, Bahkali AH, Wang Y (2014c) Camarosporium-like species are polyphyletic in Pleosporales; introducing Paracamarosporium and Pseudocamarosporium gen. nov. in Montagnulaceae. Cryptogam Mycol 35(2):177–198

    Google Scholar 

  • Wikee S, Udayanga D, Crous PW, Chukeatirote E, Mckenzie EHC, Bahkali AH, Dai DQ, Hyde KD (2011) Phyllosticta—an overview of current status of species recognition. Fungal Divers 51:43–61

    Google Scholar 

  • Wikee S, Lombard L, Crous PW, Nakashima C, Motohshi K, Chukeatirote E, Alias SA, McKenzie EHC, Hyde KD (2013a) Phyllosticta capitalensis, a widespread endophyte of plants. Fungal Divers 60:91–105

    Google Scholar 

  • Wikee S, Lombard L, Nakashima C, Motohashi K, Chukeatirote E, Cheewangkoon R, McKenzie EHC, Hyde KD, Crous PW (2013b) A phylogenetic re-evaluation of Phyllosticta (Botryosphaeriales). Stud Mycol 76:1–29

    CAS  PubMed Central  PubMed  Google Scholar 

  • Wingfield MJ, De Beer ZW, Slippers B, Wingfield BD, Groenewald JZ, Lombard L, Crous PW (2012) One fungus one name promotes progressive plant pathology. Mol Plant Pathol 13(6):604–613

    CAS  PubMed  Google Scholar 

  • Winton LM, Stone JK, Hansen EM, Shoemaker RA (2007) The systematic position of Phaeocryptopus gaeumannii. Mycologia 99:240–252

    CAS  PubMed  Google Scholar 

  • Wolf FA (1935) Morphology of Polythrincium, causing sooty blotch of clover. Mycologia 27:58–73

    Google Scholar 

  • Woudenberg JHC, Aveskamp MM, de Gruyter J, Spiers AG, Crous PW (2009) Multiple Didymella teleomorphs are linked to the Phoma clematidina morphotype. Persoonia 22:56–62

    CAS  PubMed Central  PubMed  Google Scholar 

  • Woudenberg JHC, Groenewald JZ, Binder M, Crous PW (2013) Alternaria redefined. Stud Mycol 75:171–212

    CAS  PubMed Central  PubMed  Google Scholar 

  • Wu W, Sutton BC, Gange AC (1997) Notes on three fungicolous fungi: Anastomyces microsporus gen. et sp. nov., Idriella rhododendri sp. nov. and Infundibura adhaerens. Mycol Res 101(11):1318–1322

    Google Scholar 

  • Wu HX, Schoch CL, Boonmee S, Bahkali AH, Chomnunti P, Hyde KD (2011) A reappraisal of Microthyriaceae. Fungal Divers 51(1):189–248

  • Wu X, Tian Q, Li WJ, Hyde KD (2014) A reappraisal of Microthyriaceae. Phytotaxa 176(1):201–212

    Google Scholar 

  • Wulandari NF, To-Anun C, Lei C, Abd-Elsalam KA, Hyde KD (2010) Guignardia/Phyllosticta species on banana. Cryptogam Mycol 31(4):403–418

    Google Scholar 

  • Zhang Y, Fournier J, Crous PW, Pointing SB, Hyde KD (2009a) Phylogenetic and morphological assessment of two new species Of Amniculicola and their allies (Pleosporales). Persoonia 23:48–54

    PubMed Central  PubMed  Google Scholar 

  • Zhang Y, Schoch CL, Fournier J, Crous PW, De Gruyter J, Woudenberg JHC, Hirayama K, Tanaka K, Pointing SB, Hyde KD (2009b) Multi-locus phylogeny of the Pleosporales: a taxonomic, ecological and evolutionary re-evaluation. Stud Mycol 64:85–102

    CAS  PubMed Central  PubMed  Google Scholar 

  • Zhang M, Koko TW, Hyde KD (2011) Towards a monograph of Dothideomycetes: studies on Diademaceae. Cryptogam Mycol 32:115–126

    Google Scholar 

  • Zhang H, Hyde KD, McKenzie EHC, Bahkali AH, Zhou D (2012) Sequence data reveals phylogenetic affinities of Acrocalymma aquatica sp. nov., Aquasubmersa mircensis gen. et sp. nov. and Clohesyomyces aquaticus (Freshwater coelomycetes). Cryptogam Mycol 33(3):333–346

    Google Scholar 

  • Zhaxybayeva O, Gogarten JP (2002) Bootstrap, Bayesian probability and maximum likelihood mapping: exploring new tools for comparative genome analyses. BMC Genomics 3(1):4

    PubMed Central  PubMed  Google Scholar 

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Acknowledgments

We thank Humidtropics, a CGIAR Research Program that aims to develop new opportunities for improved livelihoods in a sustainable environment, for partially funding this work. Plant Germplasm and Genomics Center in Germplasm Bank of Wild Species, Kunming Institute of Botany is appreciated for the help of molecule work. Nalin N. Wijayawardene is indebted to the Mushroom Research Foundation (MRF), Chiang Rai Province, Thailand for providing Postgraduate Scholarship. Kevin D. Hyde thanks the Chinese Academy of Sciences, project number 2013T2S0030, for the award of Visiting Professorship for Senior International Scientists at Kunming Institute of Botany. K.D. Hyde acknowledges a research grant from the Biodiversity Research and Training Program (BRT R253012) and The Thailand Research Fund (BRG 5280002). Yong Wang would like to thank The International Scientific Cooperated Project of Guizhou Province (No[2013] 7004). This contribution was prepared while D.L. Hawksworth was in receipt of funding from the Spanish Ministerio de Ciencia e Innovación project CGL2011-25003.

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Authors and Affiliations

  1. Key Laboratory for Plant Diversity and Biogeography of East Asia, Kunming Institute of Botany, Chinese Academy of Science, Kunming, 650201, Yunnan, People’s Republic of China

    Nalin N. Wijayawardene, Dong-Qin Dai, Rungtiwa Phookamsak & Kevin D. Hyde

  2. World Agroforestry Centre, East and Central Asia, Kunming, 650201, Yunnan, People’s Republic of China

    Nalin N. Wijayawardene, Dong-Qin Dai, Rungtiwa Phookamsak & Kevin D. Hyde

  3. Institute of Excellence in Fungal Research, Chiang Rai, 57100, Thailand

    Nalin N. Wijayawardene, Saranyaphat Boonmee, Dong-Qin Dai, Melvina J. D’souza, Asha Dissanayake, Mingkhuan Doilom, Singang Hongsanan, Ruvishika Jayawardena, Jian-Kui Liu, Dimuthu S. Manamgoda, Rungtiwa Phookamsak, Kasun M. Thambugala, Dhanushka N. Wanasinghe, Saowanee Wikee, H. A. Ariyawansa, D. Jayarama Bhat, Putarak Chomnunti, Wen-Jing Li, Qing Tian & Kevin D. Hyde

  4. School of Science, Mae Fah Luang University, Chiang Rai, 57100, Thailand

    Saranyaphat Boonmee, Dong-Qin Dai, Melvina J. D’souza, Asha Dissanayake, Mingkhuan Doilom, Singang Hongsanan, Ruvishika Jayawardena, Jian-Kui Liu, Dimuthu S. Manamgoda, Rungtiwa Phookamsak, Kasun M. Thambugala, Dhanushka N. Wanasinghe, Saowanee Wikee, H. A. Ariyawansa, D. Jayarama Bhat, Putarak Chomnunti, Wen-Jing Li & Qing Tian

  5. Department of Plant Pathology, Agriculture College, Guizhou University, Guiyang, 550025, People’s Republic of China

    Yong Wang

  6. Forestry and Agricultural Biotechnology Institute (FABI), University of Pretoria, Pretoria, 0002, South Africa

    Pedro W. Crous

  7. CBS-KNAW Fungal Biodiversity Centre, Uppsalalaan 8, 3584 CT, Utrecht, The Netherlands

    Pedro W. Crous, Johannes Z. Groenewald, Hugo Madrid, G. Sybren De Hoog & Joyce H. C. Woudenberg

  8. State Key Laboratory of Mycology, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, People’s Republic of China

    Paul M. Kirk

  9. Mycology Section, Royal Botanic Gardens, Kew, Richmond, Surrey, TW9 3DS, UK

    Paul M. Kirk & David L. Hawksworth

  10. Department of Life Sciences, The Natural History Museum, Cromwell Road, London, SW7 5BD, UK

    David L. Hawksworth & Cécile Gueidan

  11. Departamento de Biología Vegetal II, Facultad de Farmacia, Universidad Complutense de Madrid, Plaza Ramón y Cajal, Madrid, 28040, Spain

    David L. Hawksworth

  12. Center for Genomics and Bioinformatics and Medicine Faculty, Mayor University, Camino La Pirámide 5750, Huechuraba, Santiago, Chile

    Hugo Madrid

  13. Institut Für Biologie, Martin-Luther-Universität, Bereich Geobotanik Und Botanischer Garten, Herbarium, Neuwerk 21, 06099, Halle (Saale), Germany

    Uwe Braun

  14. Musée National d’histoire Naturelle, 25 Rue Munster, L-2160, Luxembourg, Luxembourg

    Paul Diederich

  15. Institute of Plant and Environment Protection, Beijing Academy of Agriculture and Forestry Sciences, Beijing, 100097, People’s Republic of China

    Asha Dissanayake & Ruvishika Jayawardena

  16. Department of Botany and Microbiology, College of Science, King Saud University, P.O. Box 2455, Riyadh, 11451, Kingdom of Saudi Arabia

    E. B. Gareth Jones

  17. Department of Environmental Science and Policy, George Mason University, 4400 University Drive, Fairfax, VA, 22030-4444, USA

    James D. Lawrey

  18. Science and Education, Integrative Research (Botany), The Field Museum, 1400 South Lake Shore Drive, Chicago, IL, 60605-2496, USA

    Robert Lücking & Matthew P. Nelsen

  19. Institute of Plant Sciences, University of Graz, Holteigasse 6, 8010, Graz, Austria

    Lucia Muggia

  20. Department of Life Science, University of Trieste, Via L. Giorgieri 10, Trieste, Italy

    Lucia Muggia

  21. Committee on Evolutionary Biology, University of Chicago, 1025 E. 57th Street, Chicago, IL, 60637, USA

    Matthew P. Nelsen

  22. Fungal Biodiversity Laboratory (BFBD), National Center for Genetic Engineering and Biotechnology (BIOTEC), 113 Thailand Science Park, Phahonyothin Road, Khlong Nueng, Khlong Luang, Pathum Thani, Thailand

    Satinee Suetrong

  23. Faculty of Agriculture and Life Science, Hirosaki University, 3 Bunkyo-cho, Hirosaki, Aomori, 036-8561, Japan

    Kazuaki Tanaka

  24. Institute of Microbiology, Beijing Forestry University, P.O. Box 61, Beijing, 100083, People’s Republic of China

    Ying Zhang

  25. ABL Herbarium, G.v.d.Veenstraat 107, NL-3762 XK, Soest, The Netherlands

    André Aptroot

  26. College of Science, Botany and Microbiology Department, King Saud University, Riyadh, 1145, Saudi Arabia

    Ali H. Bahkali

  27. No. 128/1-J, Azad Housing Society, Curca, Goa Velha, 403108, India

    D. Jayarama Bhat

  28. Department of Ecology, Faculty of Environmental Sciences, Czech University of Life Sciences, Prague, Kamýcká 129, Praha 6—Suchdol, CZ–165 21, Czech Republic

    Kerry Knudsen

  29. Manaaki Whenua Landcare Research, Private Bag 92170, Auckland, New Zealand

    Eric H. C. McKenzie

  30. Illinois Natural History Survey, University of Illinois, 1816 South Oak Street, Champaign, IL, 61820, USA

    Andrew N. Miller

  31. Centro de Recursos Microbiológicos, Departamento de Ciências da Vida, Faculdade de Ciências e Tecnologia, Universidade Nova de Lisboa, 2829-516, Caparica, Lisbon, Portugal

    Alan J. L. Phillips

  32. Department of Chemistry and Biochemistry, 457 Sullivan Science Building, University of North Carolina, Greensboro, NC, 27402-6170, USA

    Huzefa A. Raja

  33. Royal Botanic Garden Edinburgh, 20A Inverleith Row, Edinburgh, EH3 5LR, UK

    Joanne E. Taylor

  34. Department of Mycology, W. Szafer Institute of Botany, Polish Academy of Sciences, Lubicz 46, PL-31-512, Kraków, Poland

    Marcin Piątek

  35. Department of Genetics, Forestry and Agricultural Biotechnology Institute, University of Pretoria, Pretoria, 0002, South Africa

    Bernad Slippers

  36. Plant Pathology Herbarium, Department of Agriculture, Fisheries and Forestry, Dutton Park 4102, Queensland, Australia

    Roger S. Shivas

  37. State Key Laboratory of Mycology, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100190, People’s Republic of China

    Lei Cai

  38. Department of Botany and Biodiversity Research, Faculty of Life Sciences, University of Vienna, Rennweg 14, 1030, Wien, Austria

    Walter M. Jaklitsch

  39. Institute of Forest Entomology, Forest Pathology and Forest Protection, Department of Forest- and Soil Sciences, University of Natural Resources and Life Sciences, Hasenauerstrasse 38, A-1180, Wien, Vienna, Austria

    Walter M. Jaklitsch

Authors
  1. Nalin N. Wijayawardene
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  2. Pedro W. Crous
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  3. Paul M. Kirk
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  4. David L. Hawksworth
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  5. Saranyaphat Boonmee
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  6. Uwe Braun
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  7. Dong-Qin Dai
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  8. Melvina J. D’souza
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  9. Paul Diederich
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  10. Asha Dissanayake
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  11. Mingkhuan Doilom
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  12. Singang Hongsanan
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  13. E. B. Gareth Jones
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  14. Johannes Z. Groenewald
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  15. Ruvishika Jayawardena
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  16. James D. Lawrey
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  17. Jian-Kui Liu
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  18. Robert Lücking
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  19. Hugo Madrid
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  20. Dimuthu S. Manamgoda
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  21. Lucia Muggia
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  22. Matthew P. Nelsen
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  23. Rungtiwa Phookamsak
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  24. Satinee Suetrong
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  25. Kazuaki Tanaka
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  26. Kasun M. Thambugala
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  27. Dhanushka N. Wanasinghe
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  28. Saowanee Wikee
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  29. Ying Zhang
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  30. André Aptroot
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  31. H. A. Ariyawansa
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  32. Ali H. Bahkali
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  33. D. Jayarama Bhat
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  34. Cécile Gueidan
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  35. Putarak Chomnunti
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  36. G. Sybren De Hoog
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  37. Kerry Knudsen
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  38. Wen-Jing Li
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  39. Eric H. C. McKenzie
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  40. Andrew N. Miller
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  41. Alan J. L. Phillips
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  42. Marcin Piątek
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  43. Huzefa A. Raja
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  44. Roger S. Shivas
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  45. Bernad Slippers
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  46. Joanne E. Taylor
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  47. Qing Tian
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  48. Yong Wang
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  49. Joyce H. C. Woudenberg
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  50. Lei Cai
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  51. Walter M. Jaklitsch
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  52. Kevin D. Hyde
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Corresponding author

Correspondence to Kevin D. Hyde.

Additional information

In loving memory of Sajith Wijayawardene (09.03.1987-31.05.2014) − you will always be missed as brother and best friend and I cherish the memories we had together – N. N. Wijayawardene

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Wijayawardene, N.N., Crous, P.W., Kirk, P.M. et al. Naming and outline of Dothideomycetes–2014 including proposals for the protection or suppression of generic names. Fungal Diversity 69, 1–55 (2014). https://doi.org/10.1007/s13225-014-0309-2

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  • DOI: https://doi.org/10.1007/s13225-014-0309-2

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