Skip to main content
Log in

Holomycin, a dithiolopyrrolone compound produced by Streptomyces clavuligerus

  • Mini-Review
  • Published:
Applied Microbiology and Biotechnology Aims and scope Submit manuscript

Abstract

Holomycin is a member of the dithiolopyrrolone class of secondary metabolites. It contains a cromophore formed by two heterocycles, one of them carrying a disulfide bridge. The holomycin chromophore is also present in thioluthin, aureothricin, the xenorhabdins and the complex thiomarinols. Streptomyces clavuligerus ATCC 27064 contains the holomycin gene cluster (hlm). This antibiotic is formed by a cysteine-activating non-ribosomal peptide synthetase followed by four reduction steps by a set of four different flavoproteins; the intermediate is cyclized by a thiol oxidase and modified by acylation. Holomycin is a broad spectrum antibiotic, reported as antitumoral, acting in vivo on RNA synthesis. It is modified intracellularly by the producer strains by methylation and formation of heterodimers as a way of self-protection. Holomycin might be a lead molecule for the production of new hybrid compounds with higher activity and lower toxicity.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Fig. 1
Fig. 2
Fig. 3
Fig. 4

Similar content being viewed by others

References

  • Álvarez-Álvarez R, Rodríguez-García A, Martínez-Burgo Y, Robles-Reglero V, Santamarta I, Pérez-Redondo R, Martín JF, Liras P (2013) A 1.8-Mb-reduced Streptomyces clavuligerus genome: relevance for secondary metabolism and differentiation. Appl Microbiol Biotechnol doi:10.1007/s00253-013-5382-z

  • Bouras N, Mathieu F, Sabaou N, Lebrihi A (2007) Influence on dithiolopyrrolone antibiotic production by organic acids in Saccharothrix algeriensis NRRL B-24137. Process Biochem 42:925–933

    Article  CAS  Google Scholar 

  • Bouras N, Merrouche R, Lamari L, Mathieu F, Sabaou N, Lebrihi A (2008) Precursor-directed biosynthesis of new dithiolopyrrolone analogs by Sccharothrix algeriensis NRRL B-24137. Process Biochem 43:1244–1252

    Article  CAS  Google Scholar 

  • Celmer WD, Solomons IA (1955) The structures of thiolutin and aureothricin, antibiotics containing a unique pyrrolinodithiole nucleus. J Am Chem Soc 77:2861–2865

    Article  CAS  Google Scholar 

  • Celmer WD, Tanner FWJ, Harfenist M, Lees TM, Solomons IA (1952) Characterization of the antibiotic thiolutin and its relationship with aureothricin. J Am Chem Soc 74:6304–6305

    Article  CAS  Google Scholar 

  • Charusanti P, Fong NL, Nagarajan H, Pereira AR, Li HJ, Abate EA, Su Y, Gerwick WH, Palsson BO (2012) Exploiting adaptive laboratory evolution of Streptomyces clavuligerus for antibiotic discovery and overproduction. PLoS ONE 7(3):e33727

    Article  CAS  PubMed Central  PubMed  Google Scholar 

  • Chorin AC, Bijeire L, Monje MC, Baziard G, Lebrihi A, Mathieu F (2009) Expression of pyrrothine N-acyltransferase activities in Saccharothrix algeriensis NRRL B-24137: new insights into dithiolopyrrolone antibiotic biosynthetic pathway. J Appl Microbiol 107:1751–1762

    Article  CAS  PubMed  Google Scholar 

  • Cundliffe E, Demain AL (2010) Avoidance of suicide in antibiotic-producing microbes. J Ind Microbiol Biotechnol 37(7):643–672

    Article  CAS  PubMed  Google Scholar 

  • Ettlinger L, Gäumann E, Hütter R, Keller-Schierlein W, Kradolfer F, Neipp L, Prelog V, Zähner H (1959) Stoffwechselprodukter von Actinomyceten, Holomycin. Helv Chim Acta 42:563–569

    Article  CAS  Google Scholar 

  • Fuente A, Lorenzana LM, Martin JF, Liras P (2002) Mutants of Streptomyces clavuligerus with disruptions in different genes for clavulanic acid biosynthesis produce large amounts of holomycin: possible cross-regulation of two unrelated secondary metabolic pathways. J Bacteriol 184:6559–6565

    Article  PubMed Central  PubMed  Google Scholar 

  • Fukuda D, Haines AS, Song Z, Murphy AC, Hothersall J, Stephens ER, Gurney R, Cox RJ, Crosby J, Willis CL, Simpson TJ, Thomas CM (2011) A natural plasmid uniquely encodes two biosynthetic pathways creating a potent anti-MRSA antibiotic. PLoS ONE 6(833):e18031

    Article  CAS  PubMed Central  PubMed  Google Scholar 

  • Huang S, Zhao Y, Qin Z, Wang X, Onega M, Chen L, He J, Yu Y, Deng H (2011) Identification and heterologous expression of the biosynthetic gene cluster for holomycin produced by Streptomyces clavuligerus. Process Biochem 46:811–816

    Article  CAS  Google Scholar 

  • Jia Y, Wu SL, Isenberg JS, Dai S, Sipes JM, Field L, Zeng B, Bandle RW, Ridnour LA, Wink DA, Ramchandran R, Karger BL, Roberts DD (2010) Thiolutin inhibits endothelial cell adhesion by perturbing Hsp27 interactions with components of the actin and intermediate filament cytoskeleton. Cell Stress Chaperones 15:165–81

    Article  CAS  PubMed Central  PubMed  Google Scholar 

  • Jimenez A, Tipper DJ, Davies J (1973) Mode of action of thiolutin, an inhibitor of macromolecular synthesis in Saccharomyces cerevisiae. Antimicrob Agents Chemother 3:729–738

    Article  CAS  PubMed Central  PubMed  Google Scholar 

  • Kenig M, Reading C (1979) Holomycin and an antibiotic (MM 19290) related to tunicamycin, metabolites of Streptomyces clavuligerus. J Antibiot 32:549–554

    Article  CAS  PubMed  Google Scholar 

  • Khachatourians GG, Tipper DJ (1974) Inhibition of messenger ribonucleic acid synthesis in Escherichia coli by thiolutin. J Bacteriol 119:795–804

    CAS  PubMed Central  PubMed  Google Scholar 

  • Lamari L, Zitouni A, Boudjelli H, Badji H, Sabaou N, Lebrihi A, Lefebvre G, Seguin E, Tillequin F (2002a) New dithiolopyrrolone antibiotics from Saccharothrix sp. SA 233. I. Taxonomy, fermentation, isolation and biological activities. J Antibiot 55:696–701

    Article  CAS  PubMed  Google Scholar 

  • Lamari L, Zitouni A, Dob T, Sabaou N, Lebrihi A, Germain P, Seguin E, Tillequin F (2002b) New dithiolopyrrolone antibiotics from Saccharothrix sp. SA 233. II. Physicochemical properties and structure elucidation. J Antibiot 55:702–706

    Article  CAS  PubMed  Google Scholar 

  • Li B, Walsh CT (2010) Identification of the gene cluster for the dithiolopyrrolone antibiotic holomycin in Streptomyces clavuligerus. Proc Natl Acad Sci U S A 107:19731–19735

    Article  CAS  PubMed Central  PubMed  Google Scholar 

  • Li B, Walsh CT (2011) Streptomyces clavuligerus HlmI is an intramolecular disulfide-forming dithiol oxidase in holomycin biosynthesis. Biochemistry 50:4615–4622

    Article  CAS  PubMed Central  PubMed  Google Scholar 

  • Li R, Khaleeli N, Townsend CA (2000) Expansion of the clavulanic acid gene cluster: identification and in vivo functional analysis of three new genes required for biosynthesis of clavulanic acid by Streptomyces clavuligerus. J Bacteriol 182:4087–4095

    Article  CAS  PubMed Central  PubMed  Google Scholar 

  • Li B, Lyle MP, Chen G, Li J, Hu K, Tang L, Alaoui-Jamali MA, Webster J (2007) Substituted 6-amino-4H-[1,2]dithiolo[4,3-b]pyrrol-5-ones: synthesis, structure–activity relationships, and cytotoxic activity on selected human cancer cell lines. Bioorg Med Chem 15:4601–4608

    Article  CAS  PubMed  Google Scholar 

  • Li B, Forseth RR, Bowers AA, Schroeder FC, Walsh CT (2012) A backup plan for self-protection: S-methylation of holomycin biosynthetic intermediates in Streptomyces clavuligerus. ChemBioChem 13:2521–2526

    Article  CAS  PubMed Central  PubMed  Google Scholar 

  • Lorenzana LM, Pérez-Redondo R, Santamarta I, Martín JF, Liras P (2004) Two oligopeptide-permease-encoding genes in the clavulanic acid cluster of Streptomyces clavuligerus are essential for production of the beta-lactamase inhibitor. J Bacteriol 186(11):3431–3438

    Article  CAS  PubMed Central  PubMed  Google Scholar 

  • McInerney BV, Gregson RP, Lacey MJ, Akhurst RJ, Lyons GR, Rhodes SH, Smith DR, Engelhardt LM, White AH (1991) Biologically active metabolites from Xenorhabdus spp., part 1. Dithiolopyrrolone derivatives with antibiotic activity. J Nat Prod 54:774–784

    Article  CAS  PubMed  Google Scholar 

  • Murphy AC, Fukuda D, Song Z, Hothersall J, Cox RJ, Willis CL, Thomas CM, Simpson TJ (2011) Engineered thiomarinol antibiotics active against MRSA are generated by mutagenesis and mutasynthesis of Pseudoalteromonas SANK73390. Angew Chem Int Ed 50:3271–3274

    Article  CAS  Google Scholar 

  • Nárdiz N, Santamarta I, Lorenzana LM, Martín JF, Liras P (2011) A rhodanese-like protein is highly overrepresented in the mutant S. clavuligerus oppA2::aph: effect on holomycin and other secondary metabolites production. Microb Biotechnol 4:216–225

    Google Scholar 

  • O’Neill A, Oliva B, Storey C, Hoyle A, Fishwick C, Chopra I (2000) RNA polymerase inhibitors with activity against rifampin-resistant mutants of Staphylococcus aureus. Antimicrob Agents Chemother 44:3163–3166

    Article  PubMed Central  PubMed  Google Scholar 

  • Okamura K, Soga K, Shimauchi Y, Ishikura T (1977) Holomycin and N-propionyl-holothin, antibiotics produced by a cephamycin C producer. J Antibiot 30:334–336

    Article  CAS  PubMed  Google Scholar 

  • Oliva B, O’Neill A, Wilson JM, O’Hanlon PJ, Chopra I (2001) Antimicrobial properties and mode of action of the pyrrothine holomycin. Antimicrob Agents Chemother 45:532–703

    Article  CAS  PubMed Central  PubMed  Google Scholar 

  • Pelechano V, Pérez-Ortín JE (2008) The transcriptional inhibitor thiolutin blocks mRNA degradation in yeast. Yeast 25:85–92

    Article  CAS  PubMed  Google Scholar 

  • Qin Z, Baker AT, Raab A, Huang S, Wang TH, Yu Y, Jaspars M, Secombes CJ, Deng H (2013) The fish pathogen Yersinia ruckeri produces holomycin and uses an RNA methyltransferase for self-resistance. J Biol Chem 288:14688–14697

    Article  CAS  PubMed Central  PubMed  Google Scholar 

  • Robles-Reglero V, Santamarta I, Alvarez-Álvarez R, Martín JF, Liras P (2013) Transcriptional analysis and proteomics of the holomycin gene cluster in overproducer mutants of Streptomyces clavuligerus. J Biotechnol 2013(163):69–76

    Article  Google Scholar 

  • Rodríguez García, A (1998) Clonación de genes de la vía biosintética de la arginina. Efecto sobre la producción de ácido clavulánico. Ph.D. Thesis. University of León

  • Schrettl M, Carberry S, Kavanagh K, Haas H, Jones GW, O’Brien J, Nolan A, Stephens J, Fenelon O, Doyle S (2010) Self-protection against gliotoxin-a component of the gliotoxin biosynthetic cluster, GliT, completely protects Aspergillus fumigatus against exogenous gliotoxin. PLoS Pathog 10, 6(6): e1000952

    Google Scholar 

  • Shiozawa H, Kagasaki T, Haruyama H, Domon H, Utsui Y, Kodama K, Takahashi S (1993) Thiomarinol, a new hybrid antimicrobial antibiotic produced by a marine bacterium: fermentation, isolation, structure, and antimicrobial activity. J Antibiot 46:1834–1842

    Article  CAS  PubMed  Google Scholar 

  • Tipper DJ (1973) Inhibition of yeast ribonucleic-acid polymerases by thiolutin. J Bacteriol 116:245–256

    CAS  PubMed Central  PubMed  Google Scholar 

  • Webster JM, Li J, Chen G (2000) Anticancer property of dithiolopyrrolones. U.S. patent number 6,020,360.

  • Wietz M, Mansson M, Gotfredsen CH, Larsen TO, Gram L (2010) Antibacterial compounds from marine Vibrionaceae isolated on a global expedition. Mar Drugs 8:2946–2960

    Article  CAS  PubMed Central  PubMed  Google Scholar 

  • Yin H, Xiang S, Zheng J, Fan K, Yu T, Yang X, Peng Y, Wang H, Feng D, Luo Y, Bai H, Yang K (2012) Induction of holomycin production and complex metabolic changes by the argR mutation in Streptomyces clavuligerus NP1. Appl Environ Microbiol 78:3431–3441

    Google Scholar 

Download references

Acknowledgements

This research was supported by grants BIO2012-34723 from the Spanish Ministry of Science and Innovation and LE046-A11-2 from the Junta de Castilla y León. The author acknowledges the help of Prof. Juan F. Martín and R. Álvarez-Álvarez for critical reading of the manuscript.

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Paloma Liras.

Rights and permissions

Reprints and permissions

About this article

Cite this article

Liras, P. Holomycin, a dithiolopyrrolone compound produced by Streptomyces clavuligerus . Appl Microbiol Biotechnol 98, 1023–1030 (2014). https://doi.org/10.1007/s00253-013-5410-z

Download citation

  • Received:

  • Revised:

  • Accepted:

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1007/s00253-013-5410-z

Keywords

Navigation