Skip to main content
Log in

In silico identification of novel and selective monoamine oxidase B inhibitors

  • Translational Neurosciences - Original Article
  • Published:
Journal of Neural Transmission Aims and scope Submit manuscript

Abstract

Monoamine oxidases (MAO) A and B are flavin adenine dinucleotides containing enzymes bound to the mitochondrial outer membranes of the cells of the brain, liver, intestine, and placenta, as well as platelets. Recently, selective MAO-B inhibitors have received increasing attention due to their neuroprotective properties and the multiple roles they can play in the therapy of neurodegenerative disorders. This study was based on 10 scaffolds that were selected from more than a million lead compounds in the ZINCv12 lead library for their structural and physicochemical properties which inhibit MAO-B. Utilizing ZINC and Accelrys 3.1 fragment-based libraries, which contain about 400 thousand fragments, we generated 200 potential candidates. GOLD, LibDock, and AutoDock 4.02 were used to identify the inhibition constants and their position in the active sites of both MAO isozymes. The dispositions of the candidate molecules within the organism were checked with ADMET PSA 2D (polar surface area) against ADMET AlogP98 (the logarithm of the partition coefficient between n-octanol and water). The MAO-B inhibition activities of the candidates were compared with the properties of rasagiline which is known to be a selective inhibitor of MAO-B.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Fig. 1
Fig. 2
Fig. 3
Fig. 4
Fig. 5
Scheme 1
Fig. 6
Scheme 2

Similar content being viewed by others

References

  • Binda C, Wang J, Pisani L, Caccia C, Carotti A, Salvati P, Edmondson DE, Mattevi A (2007) Structures of human monoamine oxidase B complexes with selective noncovalent inhibitors: safinamide and coumarin analogs. J Med Chem 50:5848

    Article  PubMed  CAS  Google Scholar 

  • Borstnar R, Repic M, Krzan M, Mavri J, Vianello R (2011) Irreversible inhibition of monoamine oxidase B by the antiparkinsonia medicines rasagiline and selegiline: a computational study. Eur J Org Chem 2011(32):6419–6433

    Article  CAS  Google Scholar 

  • Chimenti F, Maccioni E, Secci D, Bolasco A, Chimenti P, Granese A, Befani O, Turini P, Alcaro S, Ortuso F, Cardia MC, Distinto S (2007) Selective inhibitory activity against MAO and molecular modeling studies of 2-thiazolylhydrazone derivatives. J Med Chem 50:707–712

    Article  PubMed  CAS  Google Scholar 

  • Edmondson DE, Binda C, Mattevi A (2007) Structural insights into the mechanism of amine oxidation by monoamine oxidases A and B. Arch Biochem Biophys 464:269–276

    Article  PubMed  CAS  Google Scholar 

  • Erdem SS, Karahan Ö, Yildiz I, Yelekci K (2006) A computational study on theamine-oxidation mechanism of monoamine oxidase: insight into the polar nucleophilic mechanism. Org Biomol Chem 4(4):646–658

    Article  PubMed  CAS  Google Scholar 

  • Gökhan-Kelekçi N, Koyunoglu S, Yabanoglu S, Yelekçi K, Özgen Ö, Uçar G, Erol K, Kendi E, Yesilada A (2009) New pyrazoline bearing 4(3H)-quinazolinone inhibitors of monoamine oxidase Synthesis, biological evaluation, and structural determinants of MAO-A and MAO-B selectivity. Bioorg Med Chem 17:675–689

    Article  PubMed  Google Scholar 

  • Harkcom WT, Bevan DR (2007) Molecular docking of inhibitors into monoamine oxidase B. Biochem Biophys Res Commun 360:401–406

    Article  PubMed  CAS  Google Scholar 

  • Holtzheimer PE, Nemeroff CB (2006) Advances in the treatment of depression. NeuroTherapeutics 3:42–56

    Article  CAS  Google Scholar 

  • Hubálek F, Binda C, Li M, Herzig Y, Sterling J, Youdim MB, Mattevi A, Edmondson DE (2004) Inactivation of purified human recombinant monoamine oxidases A and B by rasagiline and its analogues. J Med Chem 47(7):1760–1766

    Article  PubMed  Google Scholar 

  • Huey R, Morris GM, Olson AJ, Goodsell DS (2007) A semi-empirical free energy force field with charge-based desolvation. J Comp Chem 28(6):1145–1152

    Article  CAS  Google Scholar 

  • Irwin JJ, Shoichet BK (2005) ZINC—a free database of commercially available compounds for virtual screening. J Chem Inf Model 45(1):177–182

    Article  PubMed  CAS  Google Scholar 

  • Morris GM, Goodsell DS, Halliday RS, Huey R, Hart WE, Belew RK, Olson AJ (1998) Automated docking using a Lamarckian genetic algorithm and an empirical binding free energy function. J Comp Chem 19(14):1639–1662

    Article  CAS  Google Scholar 

  • Morris GM, Huey R, Lindstrom W, Sanner MF, Belew RK, Goodsell DS, Olson AJ (2009) Autodock4 and AutoDockTools4: automated docking with selective receptor flexibility. J Comput Chem 16:2785–2791

    Article  Google Scholar 

  • Silverman RB, Hoffman SJ, Catus WBA III (1982) Mechanism for mitochondrial monoamine oxidase catalyzed amine oxidation. J Am Chem Soc 102:7126–7128

    Article  Google Scholar 

  • Son S-Y, Ma J, Kondou Y, Yoshimura M, Yamashita E, Tsukihara T (2008) Structure of human monoamine oxidase A at 2.2 Å resolution: the control of opening the entry for substrates/inhibitors. PNAS 105(15):5739–5744

    Article  PubMed  CAS  Google Scholar 

  • Toprakci M, Yelekci K (2005) Docking studies on monoamine oxidase-B inhibitors: estimation of inhibition constants (Ki) of a series of experimentally tested compounds. Bioorg Med Chem Lett 15:4438–4446

    Article  PubMed  CAS  Google Scholar 

  • Wang J, Edmondson DE (2011) 2H kinetic isotope effects and pH dependence of catalysis as mechanistic probes of rat monoamine oxidase A: comparisons with the human enzyme. Biochemistry 50:7710–7717

    Article  PubMed  CAS  Google Scholar 

  • Weinreb O, Amit T, Bar-Am O, Youdim MBH (2010) Rasagiline: a novel anti-Parkinsonian monoamine oxidase-B inhibitor with neuroprotective activity. Prog Neurobiol 92:330–344

    Article  PubMed  CAS  Google Scholar 

  • Weyler W, Hsu YP, Breakefield XO (1990) Biochemistry and genetics of monoamine oxidase. Pharmacol Ther 47:391–417

    Article  PubMed  CAS  Google Scholar 

  • Yelekci K, Lu X, Silverman RB (1989) Electron-spin resonance studies of monoamin oxidase-B 1st direct evidence for a substrate radical intermediate. J Am Chem Soc 111:1138–1140

    Article  CAS  Google Scholar 

  • Yelekci K, Karahan Ö, Toprakci M (2007) Docking of novel reversible monoamine oxidase-B inhibitors: efficient prediction of ligand binding sites and estimation of inhibitors thermodynamic properties. J Neural Transm 114:725–732

    Article  PubMed  CAS  Google Scholar 

  • Youdim MBH, Edmondson D, Tipton KF (2006) The therapeutic potential of monoamine oxidase inhibitors. Nat Rev Neurosci 7:295–309

    Article  PubMed  CAS  Google Scholar 

Download references

Acknowledgments

This research was supported by The Scientific and Technological Research Council of Turkey (TUBITAK), grant number 108T232.

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Kemal Yelekçi.

Rights and permissions

Reprints and permissions

About this article

Cite this article

Yelekçi, K., Büyüktürk, B. & Kayrak, N. In silico identification of novel and selective monoamine oxidase B inhibitors. J Neural Transm 120, 853–858 (2013). https://doi.org/10.1007/s00702-012-0954-0

Download citation

  • Received:

  • Accepted:

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1007/s00702-012-0954-0

Keywords

Navigation