Abstract
A hyperthermostable glycoside hydrolase family 51 (GH51) α-l-arabinofuranosidase from Thermotoga petrophila RKU-1 (TpAraF) was cloned, overexpressed, purified and characterized. The recombinant enzyme had optimum activity at pH 6.0 and 70°C with linear α-1,5-linked arabinoheptaose as substrate. The substrate cleavage pattern monitored by capillary zone electrophoresis showed that TpAraF is a classical exo-acting enzyme producing arabinose as its end-product. Far-UV circular dichroism analysis displayed a typical spectrum of α/β barrel proteins analogously observed for other GH51 α-l-arabinofuranosidases. Moreover, TpAraF was crystallized in two crystalline forms, which can be used to determine its crystallographic structure.
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References
Beguin P, Aubert JP (1994) The biological degradation of cellulose. FEMS Microbiol Lett 13:25–58
Edelhoch H (1967) Spectroscopic determination of tryptophan and tyrosine in proteins. Biochemistry 6:1948–1954
Kaji A (1984) l-Arabinosidases. Adv Carbohydr Chem Biochem 47:383–394
Laemmli UK (1970) Cleavage of structural proteins during the assembly of the head of bacteriophage T4. Nature 227:680–685
Matthews BW (1968) Solvent content of protein crystals. J Mol Biol 33:491–497
Naran R, Pierce ML, Mort AJ (2007) Detection and identification of rhamnogalacturonan lyase activity in intercellular spaces of expanding cotton cotyledons. Plant J 50:95–107
Otwinowski Z, Minor W (1997) Processing of X-ray diffraction data collected in oscillation mode. Method Enzymol 276:307–326
Saha BC (2000) Alpha-l-arabinofuranosidases: biochemistry, molecular biology and application in biotechnology. Biotechnol Adv 18:403–423
Sheehan J, Himmel M (1999) Enzymes, energy, and the environment: a strategic perspective on the U.S. department of energy’s research and development activities for Bioethanol. Biotechnol Progr 15:817–827
Squina FM, Mort AJ, Decker SR et al (2009) Xylan decomposition by Aspergillus clavatus endo-xylanase. Protein Expres Purif 68:65–71
Takahata Y, Nishijima M, Hoaki T et al (2001) Thermotoga petrophila sp. nov. and Thermotoga naphthophila sp. nov., two hyperthermophilic bacteria from the kubiki oil reservoir in Niigata, Japan. Int J Syst Evol Micr 51:1901–1909
Whitmore L, Wallace BA (2004) DICHROWEB, an online server for protein secondary structure analyses from circular dichroism spectroscopic data. Nucleic Acids Res 32:W668–W673
Acknowledgments
This research was supported by grants from Fundação de Amparo a Pesquisa do Estado de São Paulo (FAPESP, 08/58037-9) to FMS and Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq, 478059/2009-4) to MTM. RAP has funding from the Department of Energy, awards 06103-OKL and ZDJ-7-77608-01.
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The first two authors have contributed equally to this work.
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dos Santos, C.R., Squina, F.M., Navarro, A.M. et al. Functional and biophysical characterization of a hyperthermostable GH51 α-l-arabinofuranosidase from Thermotoga petrophila . Biotechnol Lett 33, 131–137 (2011). https://doi.org/10.1007/s10529-010-0409-3
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DOI: https://doi.org/10.1007/s10529-010-0409-3