Skip to main content

Advertisement

Log in

Outbreak-Causing Fungi: Pneumocystis jirovecii

  • Review
  • Published:
Mycopathologia Aims and scope Submit manuscript

Abstract

Pneumocystis jirovecii pneumonia (PCP) is an important cause of morbidity in immunocompromised patients, with a higher mortality in non-HIV than in HIV patients. P. jirovecii is one of the rare transmissible pathogenic fungi and the only one that depends fully on the host to survive and proliferate. Transmissibility among humans is one of the main specificities of P. jirovecii. Hence, the description of multiple outbreaks raises questions regarding preventive care management of the disease, especially in the non-HIV population. Indeed, chemoprophylaxis is well codified in HIV patients but there is a trend for modifications of the recommendations in the non-HIV population. In this review, we aim to discuss the mode of transmission of P. jirovecii, identify published outbreaks of PCP and describe molecular tools available to study these outbreaks. Finally, we discuss public health and infection control implications of PCP outbreaks in hospital setting for in- and outpatients.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Institutional subscriptions

Fig. 1

Similar content being viewed by others

References

  1. Neblett-Fanfair R, Benedict K, Bos J, Bennett SD, Lo Y-C, Adebanjo T, et al. Necrotizing cutaneous mucormycosis after a tornado in Joplin, Missouri, in 2011. N Engl J Med. 2012;367:2214–25.

    PubMed  Google Scholar 

  2. Etienne KA, Roe CC, Smith RM, Vallabhaneni S, Duarte C, Escadon P, et al. Whole-genome sequencing to determine origin of multinational outbreak of sarocladium kiliense bloodstream infections. Emerg Infect Dis. 2016;22:476–81.

    CAS  PubMed  Google Scholar 

  3. Smith RM, Schaefer MK, Kainer MA, Wise M, Finks J, Duwve J, et al. Fungal infections associated with contaminated methylprednisolone injections. N Engl J Med. 2013;369:1598–609.

    CAS  PubMed  Google Scholar 

  4. Spivak ES, Hanson KE. Candida auris: an emerging fungal pathogen. J Clin Microbiol. 2018;56:e01588-17-22.

    Google Scholar 

  5. Delanoë P, Delanoë E. Sur les rapports des kytes de carinii du poumon des rats avec le Trypanosoma lewisi. CR Acad Sci. 1912;155:658–60.

    Google Scholar 

  6. Edman JC, Kovacs JA, Masur H, Santi DV, Elwood HJ, Sogin ML. Ribosomal RNA sequence shows Pneumocystis carinii to be a member of the fungi. Nature. 1988;334:519–22.

    CAS  PubMed  Google Scholar 

  7. Cushion MT, Ashbaugh A, Hendrix K, Linke MJ, Tisdale N, Sayson SG, et al. Gene expression of pneumocystis murinaafter treatment with anidulafungin results in strong signals for sexual reproduction, cell wall integrity, and cell cycle arrest, indicating a requirement for ascus formation for proliferation. Antimicrob Agents Chemother. 2018;62:e02513-17-21.

    Google Scholar 

  8. Ma L, Chen Z, Huang DW, Kutty G, Ishihara M, Wang H, et al. Genome analysis of three Pneumocystis species reveals adaptation mechanisms to life exclusively in mammalian hosts. Nat Commun. 2016;7:10740.

    CAS  PubMed  Google Scholar 

  9. Ma L, Cissé OH, Kovacs JA. A molecular window into the biology and epidemiology of Pneumocystis spp. Clin Microbiol Rev. 2018;31:1815–49.

    Google Scholar 

  10. Gajdusek DC. Pneumocystis carinii: etiologic agent of interstitial plasma cell pneumonia of premature and young infants. Pediatrics. 1957;19:543–65.

    CAS  PubMed  Google Scholar 

  11. Hay JW, Osmond DH, Jacobson MA. Projecting the medical costs of AIDS and ARC in the United States. J Acquir Immune Defic Syndr. 1988;1:466–85.

    CAS  PubMed  Google Scholar 

  12. Cazein F, Pillonel J, Le Strat Y, Pinget R, Le Vu S, Brunet S. Découvertes de séropositivité VIH et de sida, France, 2003–2013. Bull Epidémiol Hebd. 2015;152–61. http://invs.santepubliquefrance.fr/Dossiers-thematiques/Maladies-infectieuses/VIH-sida-IST/Infection-a-VIH-et-sida/Actualites/Decouvertes-de-seropositivite-VIH-et-de-sida.-Point-epidemiologique-du-23-mars-2017.

  13. Buchacz K, Lau B, Jing Y, Bosch R, Abraham AG, Gill MJ, et al. Incidence of AIDS-defining opportunistic infections in a multicohort analysis of HIV-infected persons in the United States and Canada, 2000–2010. J Infect Dis. 2016;214:862–72.

    PubMed  Google Scholar 

  14. Roblot F, Godet C, Le Moal G, Garo B, Faouzi Souala M, Dary M, et al. Analysis of underlying diseases and prognosis factors associated with Pneumocystis carinii pneumonia in immunocompromised HIV-negative patients. Eur J Clin Microbiol Infect Dis. 2002;21:523–31.

    CAS  PubMed  Google Scholar 

  15. Stern A, Green H, Paul M, Vidal L, Leibovici L. Prophylaxis for Pneumocystis pneumonia (PCP) in non-HIV immunocompromised patients. The Cochrane Database of Systematic Reviews; 2014. p. 137–67.

  16. Fillatre P, Decaux O, Jouneau S, Revest M, Gacouin A, Robert-Gangneux F, et al. Incidence of Pneumocystis jirovecii pneumonia among groups at risk in HIV-negative patients. Am J Med. 2014;127(1242):e11–7.

    Google Scholar 

  17. Brown GD, Denning DW, Gow NAR, Levitz SM, Netea MG, White TC. Hidden killers: human fungal infections. Sci Transl Med. 2012;4:165rv13-3.

    Google Scholar 

  18. Cordonnier C, Alanio A, Cesaro S, Maschmeyer G, Einsele H, Donnelly JP, et al. Pneumocystis jirovecii pneumonia: still a concern in patients with haematological malignancies and stem cell transplant recipients—authors’ response. J Antimicrob Chemother. 2017;19:dkw580-3.

    Google Scholar 

  19. Salzer HJF, Schäfer G, Hoenigl M, Günther G, Hoffmann C, Kalsdorf B, et al. Clinical, diagnostic, and treatment disparities between HIV-infected and non-HIV-infected immunocompromised patients with Pneumocystis jirovecii pneumonia. Respiration. 2018;96:52–65.

    CAS  PubMed  Google Scholar 

  20. Kovacs JA, Hiemenz JW, Macher AM, Stover D, Murray HW, Shelhamer J, et al. Pneumocystis carinii pneumonia: a comparison between patients with the acquired immunodeficiency syndrome and patients with other immunodeficiencies. Ann Intern Med. 1984;100:663–71.

    CAS  PubMed  Google Scholar 

  21. Bitar D, Lortholary O, Le Strat Y, Nicolau J, Coignard B, Tattevin P, et al. Population-based analysis of invasive fungal infections, France, 2001–2010. Emerg Infect Dis. 2014;20:1163–9.

    Google Scholar 

  22. Alanio A, Hauser PM, Lagrou K, Melchers WJG, Helweg-Larsen J, Matos O, et al. ECIL guidelines for the diagnosis of Pneumocystis jirovecii pneumonia in patients with haematological malignancies and stem cell transplant recipients. J Antimicrob Chemother. 2016;71:2386–96.

    CAS  PubMed  Google Scholar 

  23. White PL, Backx M, Barnes RA. Diagnosis and management of Pneumocystis jirovecii infection. Expert Rev Anti-infect Ther. 2019;15:435–47.

    Google Scholar 

  24. Gits-Muselli M, White LP, Mengoli C, Chen S, Crowley B, Dingemans G, et al. The Fungal PCR Initiative’s evaluation of in-house and commercial Pneumocystis jirovecii qPCR assays: towards a standard for a diagnostics assay. Med Mycol. 2019 (in press).

  25. Maschmeyer G, Helweg-Larsen J, Pagano L, Robin C, Cordonnier C, Schellongowski P. ECIL guidelines for treatment of Pneumocystis jiroveciipneumonia in non-HIV-infected haematology patients. J Antimicrob Chemother. 2016;71:2405–13.

    CAS  PubMed  Google Scholar 

  26. Panel on Opportunistic Infections in HIV-Infected Adults and Adolescents. Guidelines for the prevention and treatment of opportunistic infections in HIV-infected adults and adolescents: recommendations from the Centers for Disease Control and Prevention, the National Institutes of Health, and the HIV Medicine Association of the Infectious Diseases Society of America. 2017. http://aidsinfo.nih.gov/contentfiles/lvguidelines/adult_oi.pdf.

  27. Fishman JA, Gans H, the AST Infectious Diseases Community of Practice. Pneumocystis jiroveciin solid organ transplantation—guidelines from the American society of transplantation infectious diseases community of practice. Clin Transpl. 2019;33:e13587.

    Google Scholar 

  28. Kucera K. Pneumocystosis as an anthropozoonosis. Ann Parasitol Hum Comp. 1967;42:465–81.

    CAS  PubMed  Google Scholar 

  29. Hughes WT. Natural mode of acquisition for de novo infection with Pneumocystis carinii. J Infect Dis. 1982;145:842–8.

    CAS  PubMed  Google Scholar 

  30. Tedersoo L, Anslan S, Bahram M, Põlme S, Riit T, Liiv I, et al. Shotgun metagenomes and multiple primer pair-barcode combinations of amplicons reveal biases in metabarcoding analyses of fungi. MycoKeys. 2015;10:1–43.

    Google Scholar 

  31. Tedersoo L, Bahram M, Põlme S, Kõljalg U, Yorou NS, Wijesundera R, et al. Fungal biogeography. Global diversity and geography of soil fungi. Science. 2014;346:1256688.

    PubMed  Google Scholar 

  32. Wakefield AE. DNA sequences identical to Pneumocystis carinii f. sp. carinii and Pneumocystis carinii f. sp. hominis in samples of air spora. J Clin Microbiol. 1996;34:1754–9.

    CAS  PubMed  Google Scholar 

  33. Chin K, Luttrell TD, Roe JD, Shadzi S, Wyder MA, Kaneshiro ES. Putative Pneumocystis dormant forms outside the mammalian host, and long-term culture derived from them: initial characterizations. J Eukaryot Microbiol. 1999;46:95S–9S.

    CAS  Google Scholar 

  34. Valade S, Azoulay E, Damiani C, Derouin F, Totet A, Menotti J. Pneumocystis jirovecii airborne transmission between critically ill patients and health care workers. Intensive Care Med. 2015;41:1–3.

    Google Scholar 

  35. Aliouat-Denis C-M, Martinez A, Aliouat EM, Pottier M, Gantois N, Dei-Cas E. The Pneumocystis life cycle. Mem Inst Oswaldo Cruz. 2009;104:419–26.

    Google Scholar 

  36. Cushion MT, Linke MJ, Ashbaugh A, Sesterhenn T, Collins MS, Lynch K, et al. Echinocandin treatment of pneumocystis pneumonia in rodent models depletes cysts leaving trophic burdens that cannot transmit the infection. PLoS ONE. 2010;5:e8524-12.

    Google Scholar 

  37. Choukri F, Aliouat EM, Menotti J, Totet A, Gantois N, Garin YJF, et al. Dynamics of pneumocystis carinii air shedding during experimental pneumocystosis. J Infect Dis. 2011;203:1333–6.

    Google Scholar 

  38. Choukri F, Menotti J, Sarfati C, Lucet J-C, Nevez G, Garin YJF, et al. Quantification and spread of Pneumocystis jirovecii in the surrounding air of patients with Pneumocystis pneumonia. Clin Infect Dis. 2010;51:259–65.

    CAS  Google Scholar 

  39. Hughes WT, Bartley DL, Smith BM. A natural source of infection due to Pneumocystis carinii. J Infect Dis. 1983;147:595.

    CAS  PubMed  Google Scholar 

  40. Soulez B, Palluault F, Cesbron JY, Dei-Cas E, Capron A, Camus D. Introduction of Pneumocystis carinii in a colony of SCID mice. J Protozool. 1991;38:123S–5S.

    CAS  PubMed  Google Scholar 

  41. Khalife S, Chabé M, Gantois N, Audebert C, Pottier M, Hlais S, et al. Relationship between Pneumocystis carinii burden and the degree of host immunosuppression in an airborne transmission experimental model. J Eukaryot Microbiol. 2015;63:309–17.

    PubMed  Google Scholar 

  42. Martinez A, Halliez MCM, Moukhtar Aliouat E, Chabé M, Standaert-Vitse A, Fréalle E, et al. Growth and airborne transmission of cell-sorted life cycle stages of Pneumocystis carinii. PLoS ONE. 2013;8:e79958-8.

    Google Scholar 

  43. Chabé M, Dei-Cas E, Creusy C, Fleurisse L, Respaldiza N, Camus D, et al. Immunocompetent hosts as a reservoir of pneumocystis organisms: histological and rt-PCR data demonstrate active replication. Eur J Clin Microbiol Infect Dis. 2004;23:89–97.

    PubMed  Google Scholar 

  44. Gigliotti F, Harmsen AG, Wright TW. Characterization of transmission of Pneumocystis carinii f. sp. muris through Immunocompetent BALB/c mice. Infect Immun. 2003;71:3852–6.

    CAS  PubMed  Google Scholar 

  45. Menotti J, Emmanuel A, Bouchekouk C, Chabé M, Choukri F, Pottier M, et al. Evidence of airborne excretion of Pneumocystis carinii during infection in immunocompetent rats. Lung involvement and antibody response. PLoS ONE. 2013;8:e62155-5.

    Google Scholar 

  46. An CL, Gigliotti F, Harmsen AG. Exposure of immunocompetent adult mice to Pneumocystis carinii f. sp. muris by cohousing: growth of P. carinii f. sp. muris and host immune response. Infect Immun. 2003;71:2065–70.

    CAS  PubMed  Google Scholar 

  47. Pifer LL, Hughes WT, Stagno S, Woods D. Pneumocystis carinii infection: evidence for high prevalence in normal and immunosuppressed children. Pediatrics. 1978;61:35–41.

    CAS  PubMed  Google Scholar 

  48. Vargas SL, Hughes WT, Santolaya ME, Ulloa AV, Ponce CA, Cabrera CE, et al. Search for primary infection by Pneumocystis carinii in a cohort of normal, healthy infants. Clin Infect Dis. 2001;32:855–61.

    CAS  PubMed  Google Scholar 

  49. Beard CB, Fox MR, Lawrence GG, Guarner J, Hanzlick RL, Huang L, et al. Genetic differences in Pneumocystis isolates recovered from immunocompetent infants and from adults with AIDS: epidemiological implications. J Infect Dis. 2005;192:1815–8.

    CAS  PubMed  Google Scholar 

  50. Goldman AS, Goldman LR, Goldman DA. What caused the epidemic of Pneumocystis pneumonia in European premature infants in the mid-20th century? Pediatrics. 2005;115:e725–36.

    PubMed  Google Scholar 

  51. Vargas SL, Ponce CA, Sanchez CA, Ulloa AV, Bustamante R, Juarez G. Pregnancy and asymptomatic carriage of Pneumocystis jirovecii. Emerg Infect Dis. 2003;9:605–6.

    PubMed  Google Scholar 

  52. Zhang Y-H, He M, Wang Y, Liao A-H. Modulators of the balance between M1 and M2 macrophages during pregnancy. Front Immunol Front. 2017;8:387–412.

    Google Scholar 

  53. Bartlett MS, Vermund SH, Jacobs R, Durant PJ, Shaw MM, Smith JW, et al. Detection of Pneumocystis carinii DNA in air samples: likely environmental risk to susceptible persons. J Clin Microbiol. 1997;35:2511–3.

    CAS  PubMed  Google Scholar 

  54. Olsson M, Lidman C, Latouche S, Björkman A, Roux P, Linder E, et al. Identification of Pneumocystis carinii f. sp. hominis gene sequences in filtered air in hospital environments. J Clin Microbiol. 1998;36:1737–40.

    CAS  PubMed  Google Scholar 

  55. Fréalle E, Valade S, Guigue N, Hamane S, Chabé M, Le Gal S, et al. Diffusion of Pneumocystis jirovecii in the surrounding air of patients with Pneumocystis colonization: frequency and putative risk factors. Med Mycol. 2016;35:myw113-5.

    Google Scholar 

  56. Le Gal S, Pougnet L, Damiani C, Fréalle E, Guéguen P, Virmaux M, et al. Pneumocystis jirovecii in the air surrounding patients with Pneumocystis pulmonary colonization. Diagn Microbiol Infect Dis. 2015;82:1–6.

    Google Scholar 

  57. Alanio A, Desnos-Ollivier M, Garcia-Hermoso D, Bretagne S. Investigating clinical issues by genotyping of medically important fungi: why and how? Clin Microbiol Rev. 2017;30:671–707.

    CAS  PubMed  Google Scholar 

  58. Phipps LM, Chen SCA, Kable K, Halliday CL, Firacative C, Meyer W, et al. Nosocomial Pneumocystis jirovecii pneumonia: lessons from a cluster in kidney transplant recipients. Transplantation. 2011;92:1327–34.

    PubMed  Google Scholar 

  59. Brunot V, Pernin V, Chartier C, Garrigue V, Vetromile F, Szwarc I, et al. An epidemic of Pneumocystis jirovecii pneumonia in a renal transplantation center: role of T-cell lymphopenia. Transpl Proc. 2012;44:2818–20.

    CAS  Google Scholar 

  60. Gianella S, Haeberli L, Joos B, Ledergerber B, Wüthrich RP, Weber R, et al. Molecular evidence of interhuman transmission in an outbreak of Pneumocystis jirovecii pneumonia among renal transplant recipients. Transpl Infect Dis. 2010;12:1–10.

    CAS  PubMed  Google Scholar 

  61. Mulpuru S, Knoll G, Weir C, Desjardins M, Johnson D, Gorn I, et al. Pneumocystis pneumonia outbreak among renal transplant recipients at a North American transplant center: risk factors and implications for infection control. Am J Infect Control. 2016;44:1–7.

    Google Scholar 

  62. Vindrios W, Argy N, Le Gal S, Lescure F-X, Massias L, Lê MP, et al. Outbreak of Pneumocystis jirovecii infection among heart transplant recipients: molecular investigation and management of an interhuman transmission. Clin Infect Dis. 2017;65:1120–6.

    CAS  PubMed  Google Scholar 

  63. Desoubeaux G, Dominique M, Morio F, Thepault R-A, Franck-Martel C, Tellier A-C, et al. Epidemiological outbreaks of Pneumocystis jirovecii pneumonia are not limited to kidney transplant recipients: genotyping confirms common source of transmission in a liver transplantation unit. J Clin Microbiol. 2016;54:1314–20.

    CAS  PubMed  Google Scholar 

  64. Rostved AA, Sassi M, Kurtzhals JAL, Sørensen SS, Rasmussen A, Ross C, et al. Outbreak of pneumocystis pneumonia in renal and liver transplant patients caused by genotypically distinct strains of Pneumocystis jirovecii. Transplantation. 2013;96:834–42.

    PubMed  Google Scholar 

  65. Rabodonirina M, Vanhems P, Couray-Targe S, Gillibert R-P, Ganne C, Nizard N, et al. Molecular evidence of interhuman transmission of Pneumocystis pneumonia among renal transplant recipients hospitalized with HIV-infected patients. Emerg Infect Dis. 2004;10:1766–73.

    PubMed  Google Scholar 

  66. de Boer MGJ, de Fijter JW, Kroon FP. Outbreaks and clustering of Pneumocystis pneumonia in kidney transplant recipients: a systematic review. Med Mycol. 2011;20:1–8.

    Google Scholar 

  67. Robin C, Alanio A, Gits-Muselli M, la Martire G, Schlemmer F, Botterel F, et al. Molecular demonstration of a pneumocystis outbreak in stem cell transplant patients: evidence for transmission in the daycare center. Front Microbiol. 2017;8:1531–8.

    Google Scholar 

  68. Gits-Muselli M, Peraldi M-N, de Castro N, Delcey V, Menotti J, Guigue N, et al. New short tandem repeat-based molecular typing method for Pneumocystis jirovecii reveals intrahospital transmission between patients from different wards. PLoS ONE. 2015;10:e0125763-18.

    Google Scholar 

  69. Helweg-Larsen J, Tsolaki AG, Miller RF, Lundgren B, Wakefield AE. Clusters of Pneumocystis carinii pneumonia: analysis of person-to-person transmission by genotyping. QJM. 1998;91:813–20.

    CAS  PubMed  Google Scholar 

  70. Olsson M, Eriksson BM, Elvin K, Strandberg M, Wahlgren M. Genotypes of clustered cases of Pneumocystis carinii pneumonia. Scand J Infect Dis. 2001;33:285–9.

    CAS  PubMed  Google Scholar 

  71. Mori S, Cho I, Sugimoto M. A cluster of Pneumocystis jirovecii infection among outpatients with rheumatoid arthritis. J Rheumatol. 2010;37:1547–8.

    PubMed  Google Scholar 

  72. Le Gal S, Damiani C, Rouille A, Grall A, Treguer L, Virmaux M, et al. A cluster of pneumocystis infections among renal transplant recipients: molecular evidence of colonized patients as potential infectious sources of Pneumocystis jirovecii. Clin Infect Dis. 2012;54:e62–71.

    PubMed  Google Scholar 

  73. Vargas SL, Ponce CA, Gigliotti F, Ulloa AV, Prieto S, Muñoz MP, et al. Transmission of Pneumocystis carinii DNA from a patient with P. carinii pneumonia to immunocompetent contact health care workers. J Clin Microbiol. 2000;38:1536–8.

    CAS  PubMed  Google Scholar 

  74. Miller RF, Ambrose HE, Wakefield AE. Pneumocystis carinii f. sp. hominis DNA in immunocompetent health care workers in contact with patients with P. carinii pneumonia. J Clin Microbiol. 2001;39:3877–82.

    CAS  PubMed  Google Scholar 

  75. Gigliotti F, Wright TW. Pneumocystis: where does it live? PLoS Pathog. 2012;8:e1003025-3.

    Google Scholar 

  76. Ponce CA, Gallo M, Bustamante R, Vargas SL. Pneumocystis colonization is highly prevalent in the autopsied lungs of the general population. Clin Infect Dis. 2010;50:347–53.

    PubMed  Google Scholar 

  77. Keely SP, Stringer JR, Baughman RP, Linke MJ, Walzer PD, Smulian AG. Genetic variation among Pneumocystis carinii hominis isolates in recurrent pneumocystosis. J Infect Dis. 1995;172:595–8.

    CAS  PubMed  Google Scholar 

  78. Keely SP, Stringer JR. Sequences of Pneumocystis carinii f. sp. hominis strains associated with recurrent pneumonia vary at multiple loci. J Clin Microbiol. 1997;35:2745–7.

    CAS  PubMed  Google Scholar 

  79. Keely SP, Baughman RP, Smulian AG, Dohn MN, Stringer JR. Source of Pneumocystis carinii in recurrent episodes of pneumonia in AIDS patients. AIDS. 1996;10:881–8.

    CAS  PubMed  Google Scholar 

  80. Tsolaki AG, Miller RF, Underwood AP, Banerji S, Wakefield AE. Genetic diversity at the internal transcribed spacer regions of the rRNA operon among isolates of Pneumocystis carinii from AIDS patients with recurrent pneumonia. J Infect Dis. 1996;174:141–56.

    CAS  PubMed  Google Scholar 

  81. Nevez G, Le Gal S, Noel N, Wynckel A, Huguenin A, Le Govic Y, et al. Investigation of nosocomial pneumocystis infections: usefulness of longitudinal screening of epidemic and post-epidemic pneumocystis genotypes. Journal of Hospital Infection. 2019;99:1–32.

    Google Scholar 

  82. Orita M, Iwahana H, Kanazawa H, Hayashi K, Sekiya T. Detection of polymorphisms of human DNA by gel electrophoresis as single-strand conformation polymorphisms. Proc Natl Acad Sci. 1989;86:2766–70.

    CAS  PubMed  Google Scholar 

  83. Nahimana A, Blanc DS, Francioli P, Bille J, Hauser PM. Typing of Pneumocystis carinii f. sp. hominis by PCR-SSCP to indicate a high frequency of co-infections. J Med Microbiol. 2000;49:753–8.

    CAS  PubMed  Google Scholar 

  84. Ma L, Kovacs JA. Rapid detection of mutations in the human-derived pneumocystis carinii dihydropteroate synthase gene associated with sulfa resistance. Antimicrob Agents Chemother. 2001;45:776–80.

    CAS  PubMed  Google Scholar 

  85. Sassi M, Ripamonti C, Mueller NJ, Yazaki H, Kutty G, Ma L, et al. Outbreaks of Pneumocystis pneumonia in 2 renal transplant centers linked to a single strain of Pneumocystis: implications for transmission and virulence. Clin Infect Dis. 2012;54:1437–44.

    CAS  PubMed  Google Scholar 

  86. Hauser PM. The development of a typing method for an uncultivable microorganism: the example of Pneumocystis jirovecii. Infect Genet Evol. 2004;4:199–203.

    CAS  PubMed  Google Scholar 

  87. Beard CB, Roux P, Nevez G, Hauser PM, Kovacs JA, Unnasch TR, et al. Strain typing methods and molecular epidemiology of Pneumocystis pneumonia. Emerg Infect Dis. 2004;10:1729–35.

    CAS  PubMed  Google Scholar 

  88. Hauser PM, Francioli P, Bille J, Telenti A, Blanc DS. Typing of Pneumocystis carinii f. sp. hominis by single-strand conformation polymorphism of four genomic regions. J Clin Microbiol. 1997;35:3086–91.

    CAS  PubMed  Google Scholar 

  89. Le Gal S, Blanchet D, Damiani C, Guéguen P, Virmaux M, Abboud P, et al. AIDS-related Pneumocystis jirovecii genotypes in French Guiana. Infect Genet Evol. 2015;29:60–7.

    PubMed  Google Scholar 

  90. Ma L, Huang DW, Cuomo CA, Sykes S, Fantoni G, Das B, et al. Sequencing and characterization of the complete mitochondrial genomes of three Pneumocystis species provide new insights into divergence between human and rodent Pneumocystis. FASEB J. 2013;27:1962–72.

    CAS  PubMed  Google Scholar 

  91. Maiden MC, Bygraves JA, Feil E, Morelli G, Russell JE, Urwin R, et al. Multilocus sequence typing: a portable approach to the identification of clones within populations of pathogenic microorganisms. Proc Natl Acad Sci. 1998;95:3140–5.

    CAS  PubMed  Google Scholar 

  92. Maitte C, Leterrier M, Le Pape P, Miegeville M, Morio F. Multilocus sequence typing of Pneumocystis jirovecii from clinical samples: how many and which loci should be used? J Clin Microbiol. 2013;51:2843–9.

    CAS  PubMed  Google Scholar 

  93. Montooth KL, Rand DM. The spectrum of mitochondrial mutation differs across species. PLoS Biol. 2008;6:e213–5.

    PubMed  Google Scholar 

  94. Esteves F, Gaspar J, De Sousa B, Antunes F, Mansinho K, Matos O. Clinical relevance of multiple single-nucleotide polymorphisms in Pneumocystis jirovecii pneumonia: development of a multiplex PCR-single-base-extension methodology. J Clin Microbiol. 2011;49:1810–5.

    CAS  PubMed  Google Scholar 

  95. Takenaka M, Brennicke A. Multiplex single-base extension typing to identify nuclear genes required for RNA editing in plant organelles. Nucl Acids Res. 2008;37:e13-3.

    Google Scholar 

  96. Chang DK. Microsatellites in the eukaryotic DNA mismatch repair genes as modulators of evolutionary mutation rate. Genome Res. 2001;11:1145–6.

    CAS  PubMed  Google Scholar 

  97. Parobek CM, Jiang LY, Patel JC, Alvarez-Martinez MJ, Miro JM, Worodria W, et al. Multilocus microsatellite genotyping array for investigation of genetic epidemiology of Pneumocystis jirovecii. J Clin Microbiol. 2014;52:1391–9.

    PubMed  Google Scholar 

  98. Alanio A, Gits-Muselli M, Mercier-Delarue S, Dromer F, Bretagne S. Diversity of Pneumocystis jirovecii during infection revealed by ultra-deep pyrosequencing. Front Microbiol. 2016;7:1531–41.

    Google Scholar 

  99. Urabe N, Yoshikazu Ishii PD, Hyodo Y, Aoki K, Yoshizawa S, Saga T, et al. Molecular epidemiological analysis of a Pneumocystis pneumonia outbreak among renal transplant patients. Clin Microbiol Infect. 2019;22:1–25.

    Google Scholar 

  100. Charpentier E, Garnaud C, Wintenberger C, Bailly S, Murat J-B, Rendu J, et al. Added value of next-generation sequencing for multilocus sequence typing analysis of a Pneumocystis jirovecii pneumonia outbreak1. Emerg Infect Dis. 2017;23:1237–45.

    CAS  PubMed  Google Scholar 

  101. Morris A, Norris KA. Colonization by Pneumocystis jirovecii and its role in disease. Clin Microbiol Rev. 2012;25:297–317.

    CAS  PubMed  Google Scholar 

  102. Alanio A, Bretagne S. Challenges in microbiological diagnosis of invasive Aspergillus infections. F1000Res. 2017;6:157–210.

    Google Scholar 

  103. Alanio A, Gits-Muselli M, Guigue N, Desnos-Ollivier M, Calderon EJ, Di Cave D, et al. Diversity of Pneumocystis jirovecii across europe: a multicentre observational study. EBioMedicine. 2017;22:155–63.

    PubMed  Google Scholar 

  104. Maertens J, Cesaro S, Maschmeyer G, Einsele H, Donnelly JP, Alanio A, et al. ECIL guidelines for preventing Pneumocystis jirovecii pneumonia in patients with haematological malignancies and stem cell transplant recipients. J Antimicrob Chemother. 2016;71:2397–404.

    CAS  PubMed  Google Scholar 

  105. Martin SI, Fishman JA, the AST Infectious Diseases Community of Practice. Pneumocystis pneumonia in solid organ transplantation. Am J Transpl. 2013;13:272–9.

    CAS  Google Scholar 

  106. Iriart X, Bouar M, Kamar N, Berry A. Pneumocystis pneumonia in solid-organ transplant recipients. J Fungi. 2015;1:293–331.

    Google Scholar 

  107. Cooley L, Dendle C, Wolf J, Teh BW, Chen SC, Boutlis C, et al. Consensus guidelines for diagnosis, prophylaxis and management of Pneumocystis jirovecii pneumonia in patients with haematological and solid malignancies, 2014. Intern Med J. 2014;44:1350–63.

    CAS  PubMed  Google Scholar 

  108. Gordon SM, LaRosa SP, Kalmadi S, Arroliga AC, Avery RK, Truesdell-LaRosa L, et al. Should prophylaxis for Pneumocystis carinii pneumonia in solid organ transplant recipients ever be discontinued? Clin Infect Dis. 1999;28:240–6.

    CAS  PubMed  Google Scholar 

  109. McKinnell JA, Cannella AP, Kunz DF, Hookrd EW, Moser SA, Miller LG, et al. Pneumocystis pneumonia in hospitalized patients: a detailed examination of symptoms, management, and outcomes in human immunodeficiency virus (HIV)-infected and HIV-uninfected persons. Transpl Infect Dis. 2012;14:510–8.

    CAS  PubMed  Google Scholar 

  110. Wynckel A, Toubas D, Noel N, Toupance O, Rieu P. Outbreak of pneumocystis pneumonia occurring in late post-transplantation period. Nephrol Dial Transpl. 2011;26:2417–8.

    Google Scholar 

  111. Goto N, Takahashi-Nakazato A, Futamura K, Okada M, Yamamoto T, Tsujita M, et al. Lifelong prophylaxis with trimethoprim-sulfamethoxazole for prevention of outbreak of Pneumocystis jirovecii pneumonia in kidney transplant recipients. Transpl Direct. 2017;3:e151–6.

    CAS  Google Scholar 

  112. Rahier JF, Magro F, Abreu C, Armuzzi A, Ben-Horin S, Chowers Y, et al. Second European evidence-based consensus on the prevention, diagnosis and management of opportunistic infections in inflammatory bowel disease. J Crohns Colitis. 2014;8:443–68.

    CAS  PubMed  Google Scholar 

  113. Botterel F, Cabaret O, Foulet F, Cordonnier C, Costa J-M, Bretagne S. Clinical significance of quantifying Pneumocystis jirovecii DNA by using real-time PCR in bronchoalveolar lavage fluid from immunocompromised patients. J Clin Microbiol. 2012;50:227–31.

    CAS  PubMed  Google Scholar 

  114. Lortholary O, Desnos-Ollivier M, Sitbon K, Fontanet A, Bretagne S, Dromer F, et al. Recent exposure to caspofungin or fluconazole influences the epidemiology of candidemia: a prospective multicenter study involving 2,441 patients. Antimicrob Agents Chemother. 2011;55:532–8.

    CAS  PubMed  Google Scholar 

  115. Schmoldt S, Schuhegger R, Wendler T, Huber I, Sollner H, Hogardt M, et al. Molecular evidence of nosocomial Pneumocystis jirovecii transmission among 16 patients after kidney transplantation. J Clin Microbiol. 2008;46:966–71.

    CAS  PubMed  Google Scholar 

  116. Siegel JD, Rhinehart E, Jackson M, Chiarello L. Guideline for isolation precautions: preventing transmission of infectious agents in health care settings. Am J Infect Control. 2007;35:S65–164.

    PubMed  Google Scholar 

  117. de Boer MGJ, Walzer PD, Mori S. Healthcare related transmission of Pneumocystis pneumonia: from key insights toward comprehensive prevention. Transpl Infect Dis. 2018;20:e12942-29.

    Google Scholar 

  118. Pougnet L, Grall A, Moal M-C, Pougnet R, Le Govic Y, Négri S, et al. Pneumocystis jirovecii exhalation in the course of pneumocystis pneumonia treatment. Infect Control Hosp Epidemiol. 2018;39:627–30.

    PubMed  Google Scholar 

  119. Yiannakis EP, Boswell TC. Systematic review of outbreaks of Pneumocystis jirovecii pneumonia: evidence that P. jirovecii is a transmissible organism and the implications for healthcare infection control. J Hosp Infect. 2019;93:1–26.

    Google Scholar 

  120. Goto N, Futamura K, Okada M, Yamamoto T, Tsujita M, Hiramitsu T, et al. Management of Pneumocystis jirovecii pneumonia in kidney transplantation to prevent further outbreak. Clin Med Insights Circ Respir Pulm Med. 2015;9s1:CCRPM.S23317-10.

    Google Scholar 

  121. Roux A, Gonzalez F, Roux M, Mehrad M, Menotti J, Zahar JR, et al. Update on pulmonary Pneumocystis jirovecii infection in non-HIV patients. Med Mal Infect. 2014;44:1–14.

    Google Scholar 

  122. Ruebush TK, Weinstein RA, Baehner RL, Wolff D, Bartlett M, Gonzles-Crussi F, et al. An outbreak of pneumocystis pneumonia in children with acute lymphocytic leukemia. Am J Dis Child. 1978;132:143–8.

    PubMed  Google Scholar 

  123. Cheung YF, Chan CF, Lee CW, Lau YL. An outbreak of Pneumocystis carinii pneumonia in children with malignancy. J Paediatr Child Health. 1994;30:173–5.

    CAS  PubMed  Google Scholar 

  124. Hennequin C, Page B, Roux P, Legendre C, Kreis H. Outbreak of Pneumocystis carinii pneumonia in a renal transplant unit. Eur J Clin Microbiol Infect Dis. 1995;14:122–6.

    CAS  PubMed  Google Scholar 

  125. Höcker B, Wendt C, Nahimana A, Tönshoff B, Hauser PM. Molecular evidence of Pneumocystis transmission in pediatric transplant unit. Emerg Infect Dis. 2005;11:330–2.

    PubMed  Google Scholar 

  126. de Boer MGJ, Bruijnesteijn van Coppenraet LES, Gaasbeek A, Berger SP, Gelinck LBS, van Houwelingen HC, et al. An outbreak of Pneumocystis jiroveci pneumonia with 1 predominant genotype among renal transplant recipients: interhuman transmission or a common environmental source? Clin Infect Dis. 2007;44:1143–9.

    PubMed  Google Scholar 

  127. Pliquett RU, Asbe-Vollkopf A, Hauser PM, Presti LL, Hunfeld KP, Berger A, et al. A Pneumocystis jirovecii pneumonia outbreak in a single kidney-transplant center: role of cytomegalovirus co-infection. Eur J Clin Microbiol Infect Dis. 2012;31:2429–37.

    CAS  PubMed  Google Scholar 

  128. Yazaki H, Goto N, Uchida K, Kobayashi T, Gatanaga H, Oka S. Outbreak of Pneumocystis jirovecii pneumonia in renal transplant recipients: P. jiroveci is contagious to the susceptible host. Transplantation. 2009;88:380–5.

    PubMed  Google Scholar 

  129. Debourgogne A, Favreau S, Ladrière M, Bourry S, Machouart M. Characteristics of Pneumocystis pneumonia in Nancy from January 2007 to April 2011 and focus on an outbreak in nephrology. J Mycol Méd. 2014;24:19–24.

    CAS  PubMed  Google Scholar 

  130. Arichi N, Kishikawa H, Mitsui Y, Kato T, Nishimura K, Tachikawa R, et al. Cluster outbreak of pneumocystis pneumonia among kidney transplant patients within a single center. Transpl Proc. 2009;41:170–2.

    Google Scholar 

  131. Thomas S, Vivancos R, Corless C, Wood G, Beeching NJ, Beadsworth MBJ. Increasing frequency of Pneumocystis jirovecii pneumonia in renal transplant recipients in the United Kingdom: clonal variability, clusters, and geographic location. Clin Infect Dis. 2011;53:307–8.

    PubMed  Google Scholar 

  132. Chapman JR, Marriott DJ, Chen SCA, MacDonald PS. Post-transplant Pneumocystis jirovecii pneumonia—a re-emerged public health problem? Kidney Int. 2013;84:240–3.

    PubMed  Google Scholar 

  133. Nankivell BJ, Firacative C, Kable K, Chen SCA, Meyer W. Molecular epidemiology linking multihospital clusters of opportunistic Pneumocystis jirovecii pneumonia. Clin Infect Dis. 2013;57:1058–9.

    CAS  PubMed  Google Scholar 

  134. Chandola P, Lall M, Sen S, Bharadwaj R. Outbreak of Pneumocystis jirovecii pneumonia in renal transplant recipients on prophylaxis: our observation and experience. Indian J Med Microbiol. 2014;32:333–6.

    CAS  PubMed  Google Scholar 

  135. Veronese G, Ammirati E, Moioli MC, Baldan R, Orcese CA, De Rezende G, et al. Single-center outbreak of Pneumocystis jirovecii pneumonia in heart transplant recipients. Transpl Infect Dis. 2018;20:e12880-17.

    Google Scholar 

  136. Morlat P. Prise en charge des patients vivant avec le VIH. Infections chez l’adulte: prophylaxies et traitements curatifs. 2018;1–60.

  137. Maertens JA, Girmenia C, Brüggemann RJ, Duarte RF, Kibbler CC, Ljungman P, et al. European guidelines for primary antifungal prophylaxis in adult haematology patients: summary of the updated recommendations from the European Conference on Infections in Leukaemia. J Antimicrobial Chemother. 2018;5:2–10.

    Google Scholar 

  138. Comité technique national des infections nosocomiales, Société Française d’Hygiène Hospitalière. Isolement septique. 1998. http://www.sante.gouv.fr/IMG/pdf/isolement.pdf.

Download references

Author information

Authors and Affiliations

Authors

Contributions

AA and SD contributed to the conception and design of the review. AA, SD and MGM drafted the manuscript. AA, SD, MGM and SB critically revised the entire manuscript, agreed to be fully accountable for ensuring the integrity and accuracy of the work and approved the final submission.

Corresponding author

Correspondence to Alexandre Alanio.

Ethics declarations

Conflict of interest

The authors declare no conflict of interest.

Additional information

Publisher's Note

Springer Nature remains neutral with regard to jurisdictional claims in published maps and institutional affiliations.

Handling Editor: Ferry Hagen.

Rights and permissions

Reprints and permissions

About this article

Check for updates. Verify currency and authenticity via CrossMark

Cite this article

Dellière, S., Gits-Muselli, M., Bretagne, S. et al. Outbreak-Causing Fungi: Pneumocystis jirovecii. Mycopathologia 185, 783–800 (2020). https://doi.org/10.1007/s11046-019-00408-w

Download citation

  • Received:

  • Accepted:

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1007/s11046-019-00408-w

Keywords

Navigation