Abstract
We identified 14 informative microsatellite loci from two taxa, Grevillea aquifolium (6) and G. infecunda (8), belonging to the Pteridifolia Group, Aspleniifolia/Hookeriana Subgroup (Proteaceae). Loci were screened for variability among 20 individuals of their source species. The number of alleles observed per locus for G. infecunda ranged from 1 to 3. Subsequent chromosome counts revealed between 20 (normal diploid) and 30 (triploid) chromosomes in different individuals. High levels of variability were observed with the number of alleles per locus ranging from 3 to 17, with a mean of 9.8 across all loci. Nei’s genetic diversity (H E ) ranged from 0.399 to 0.992 with a mean of 0.783. All loci amplified in a further 9–13 taxa from the same subgroup and under the same amplification conditions. These new markers provide useful tools for evolutionary and conservation studies assessing clonality and polyploidy in this important Australian genus.
References
Blacket MJ, Robin C, Good RT, Miller AD (2011) Universal primers for fluorescent labelling of PCR fragments—an efficient and cost effective approach to genotyping by fluorescence. Mol Ecol Res. (In Review)
England PR, Ayre DJ, Whelan RJ (1999) Microsatellites in the Australian shrub Grevillea macleayana (Proteaceae). Mol Ecol 8:689–690
Hardy OJ, Vekemans X (2002) SPAGeDi: a versatile computer program to analyse spatial genetic structure at the individual or population levels. Mol Ecol Notes 2:618–620
Hoebee S (2011) Development and cross-species amplification of microsatellite markers from the endangered Wee Jasper Grevillea (Grevillea iaspicula, Proteaceae). Muelleria 29:93–96
Holmes GD (2009) Conservation biology of the rare shrub Grevillea repens F.Muell. ex Meisn (Proteaceae). PhD thesis, The University of Melbourne, Australia
Holmes GD, James EA, Hoffmann AA (2008) Divergent levels of genetic variation and ploidy among small populations of the rare shrub, Grevillea repens. Cons Genet 10:827–837. doi:10.1007/S10592-008-9643-9
James EA, Brown GK, Citroen R, Rossetto M, Porter C (2011) Development of microsatellite loci in Triglochin procera (Juncaginaceae), a polyploid wetland plant. Cons Genet Res 3:103–105. doi:10.1007/s12686-010-9301-7
Kimpton S, James EA, Drinnan A (2002) Reproductive biology and genetic diversity in Grevillea infecunda (Proteaceae), a rare plant with no known seed production. Aust Syst Bot 15:485–492
Llorens TM (2004) Conservation genetics and ecology of two rare Grevillea species. PhD thesis, University of Wollongong, Australia
Makinson RO (2000) Grevillea, flora of Australia. 17A ABRS/CSIRO Australia, Melbourne
Margulies M, Egholm M, Altman WE, Attiya S (and 52 others) (2005) Genome sequencing in micro-fabricated high-density picolitre reactors. Nature 437: 376–380
McGillivray DJ (1986) New names in Grevillea (Proteaceae). 7 [tax. nov.]. DJ McGillivray, Sydney
McGillivray DJ, Makinson RO (1993) Grevillea; Proteaceae. A taxonomic revision. Melbourne University Press, Carlton
Meglécz E (2007) MicroFamily: a computer program for detecting flanking region similarities among different microsatellite loci. Mol Ecol Notes 7:18–20
Rousset F (2008) Genepop’007: a complete reimplementation of the Genepop software for Windows and Linux. Mol Ecol Res 8:103–106
Rozen S, Skaletsky HJ (2000) Primer3 on the WWW for general users and for biologist programmers. In: Krawetz S, Misener S (eds) Bioinformatics methods and protocols: methods in molecular biology. Humana Press, Totowa, pp 365–386
Schuelke M (2000) An economic method for the fluorescent labeling of PCR fragments. Nature Biotech 18:233–234
Zane L, Bargelloni L, Patarnello T (2002) Strategies for microsatellite isolation: a review. Mol Ecol 11:1–16
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This project was generously supported by Alcoa Australia and the Royal Botanic Gardens Melbourne.
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James, E.A., Brown, G.K., Citroen, R. et al. Microsatellite marker development for two species of holly-leafed Grevillea and cross-species amplification in the Aspleniifolia/Hookeriana Subgroup (Proteaceae). Conservation Genet Resour 4, 137–140 (2012). https://doi.org/10.1007/s12686-011-9493-5
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DOI: https://doi.org/10.1007/s12686-011-9493-5