Data and code availability
All data generated for this manuscript is made available through the online researcher gateway of the COVIDome Project, known as the COVIDome Explorer, which can be accessed at covidome.org. The RNaseq data have been deposited in NCBI Gene Expression Omnibus, with series accession number GSE167000. The mass spectrometry proteomics data have been deposited to the ProteomeXchange Consortium via the PRIDE partner repository (Perez-Riverol et al., 2019) with the dataset identifier ProteomeXchange: PXD022817. The mass cytometry data has been deposited in Flow Repository: FR-FCM-Z367. The metabolomics data have been deposited in the Metabolomics Workbench: PR001110. All code required to run the COVIDome Explorer applications can be found at https://github.com/cusom/CUSOM.COVIDome.Shiny-Apps (Zenodo https://doi.org/10.5281/zenodo.5081091) and https://github.com/cusom/CUSOM.ShinyHelpers (Zenodo https://doi.org/10.5281/zenodo.5081093). Any additional information required to reanalyze the data reported in this paper is available from the lead contact upon request.