Data and code availability
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All genome data generated in this study are publicly available in GenBank and IMG (individual accession numbers are listed in Table S1).
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All original code has been deposited at Zenodo and is publicly available. DOIs are listed in the key resources table.
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Alignment and tree files used for PD estimation have been deposited in Treebase: http://purl.org/phylo/treebase/phylows/study/TB2:S29629.