Phylogeny and evolution of the Australo-Papuan honeyeaters (Passeriformes, Meliphagidae)

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Abstract

We analyzed nucleotide variation at four loci for 75 species to produce a phylogenetic hypothesis for the Meliphagidae, and to examine the evolution and biogeographic history of the Meliphagidae. Both maximum parsimony and Bayesian methods of phylogenetic analysis were employed. The family was found to be monophyletic, though the genera Certhionyx, Anthochaera, and Phylidonyris were not. Four major clades were recovered and the spinebills (Acanthorhynchus) formed the sister clade to the remainder of the family in most analyses. The Australian endemic arid-adapted chats (Epthianura, Ashbyia) were found to be nested deeply within the family Meliphagidae. No evidence was found to support the hypothesis of separate New Guinean and Australian endemic radiations, nor of a close phylogenetic relationship between taxa from the New Guinea highlands and those from Australian northern rainforests.

Introduction

One of the dominant groups of birds in Australia and New Guinea, both numerically and ecologically, is the passerine family Meliphagidae, the honeyeaters. In certain habitats more than 12 species of honeyeater can co-occur seasonally (Keast, 1985). Although the family has its centers of diversity in Australia and New Guinea, meliphagids are also important endemic elements of the biota of many of the islands in the south Pacific.

Honeyeaters are diverse in size, morphology, and diet. They can be either nectarivorous, insectivorous, frugivorous, or more commonly, a combination of nectar- and insect-eating. Although many species have long, narrow, decurved bills, presumably adapted for nectar-feeding, these species are often insectivorous during certain seasons of the year (Lea and Gray, 1935; Rand and Gilliard, 1968). In Australia, honeyeaters are major pollinators of many endemic plant groups, including Banksia, Dryandra, Melaleuca, Hakea, and Eucalyptus (Paton and Ford, 1977; Recher, 1981). The Meliphagidae are an ecologically and evolutionarily significant element of the Australo-Papuan fauna and yet phylogenetic relationships within this large family are almost entirely unknown.

Traditionally the Meliphagidae were linked with the Nectariinidae (sunbirds) and other nectarivorous birds (Cracraft, 1981; Wetmore, 1960). DNA–DNA hybridization studies (Sibley and Ahlquist, 1985, Sibley and Ahlquist, 1990) and allozyme evidence (Christidis, 1991; Christidis and Schodde, 1991) demonstrated that the honeyeaters belong to a clade originating in the Australo-Papuan region and composed of the Meliphagidae, the Pardalotidae–Acanthizidae (Australasian warblers and allies), and Maluridae (Australasian fairy-wrens and grasswrens). Mitochondrial and nuclear sequence data (Barker et al., 2002; Cracraft and Feinstein, 2000; Ericson et al., 2002a, Ericson et al., 2002b) confirm close affinities between the Meliphagidae, Pardalotidae–Acanthizidae, and Maluridae.

Relationships within the Meliphagidae are poorly understood. There have been no phylogenetic studies of the entire family, but a few studies have examined relationships among some genera (Christidis and Schodde, 1993; Christidis et al., 1993). Published taxonomies for the Meliphagidae lack classification levels between family and genus: no subfamilies or tribes have been proposed (Christidis and Boles, 1994; Schodde, 1975; Schodde and Mason, 1999; Sibley and Monroe, 1990). The number of monotypic genera and the morphological distinctness of most genera have been cited as impediments to determining interrelationships within the family (Schodde, 1975; Schodde and Mason, 1999).

In the last decade, molecular and biochemical studies have modified the traditional composition of the family Meliphagidae. Sibley and Ahlquist (1990) demonstrated that the South African sugarbirds Promerops and New Guinean longbills Oedistoma and Toxorhamphus were not honeyeaters but more closely related to the Nectariniidae (Promerops) and Melanocharitidae (Oedistoma and Toxorhamphus). Sibley and Ahlquist also showed that the Australian chats, Epthianura and Ashbyia (formerly the Epthianuridae), were honeyeaters, a result which was supported by allozyme data (Christidis et al., 1993). In addition, DNA–DNA hybridization (Sibley and Ahlquist, 1990) and DNA sequence (Slikas et al., 2000) studies established that south Pacific Cleptornis was not a honeyeater but instead was closely related to the white-eyes (Zosteropidae). The genus Apalopteron from Bonin Island has likewise been shown to be a white-eye rather than a honeyeater, based on DNA sequence data (Springer et al., 1995). Another genus, Macgregoria, traditionally classified as a bird-of-paradise, was shown to be a honeyeater based on combined analyses of DNA sequence and morphological data (Cracraft and Feinstein, 2000).

Modifying the taxonomic review of the Meliphagidae by Sibley and Monroe (1990) with the recent changes described above, the family now comprises 182 species in 42 genera. Two of these genera (Moho and Chaetoptila) are extinct on Hawaii (Pratt et al., 1987). Australia has over 70 species of honeyeaters (Christidis and Boles, 1994), and New Guinea over 60 species (Beehler et al., 1986). A few genera are distributed across the Lesser Sunda Islands, the Moluccas and Sulawesi. One species of honeyeater, Lichmera limbata, crosses Wallace’s line, but occurs only as far west as Bali (Coates and Bishop, 1997). In the south Pacific, honeyeaters are distributed northwards from New Guinea to the Mariana Islands, as far south as New Zealand, and east to Hawaii (Pratt et al., 1987).

The main goal of this paper is to introduce a phylogenetic hypothesis for the family Meliphagidae. More specific goals are to: (1) examine systematic relationships of some taxonomically unstable genera (e.g., Certhionyx, Phylidonyris, and Meliphaga sensu lato); (2) determine the phylogenetic relationship of the Australian chats (Epthianura, Ashbyia), which are remarkable among the Meliphagidae for their adaptation to arid habitats; and (3) examine the biogeographical history of the family, especially the relationships among the New Guinean and Australian honeyeater faunas. In addition, we wanted to explore the utility of three different categories of genetic loci (mitochondrial protein-coding genes, mitochondrial ribosomal DNA, and a nuclear intron) for reconstructing phylogenetic relationships in such a large, divergent, and relatively old family of passerines.

Section snippets

Taxon sampling, DNA extraction, amplification, and sequencing

The sample of the family Meliphagidae consisted of 63 species, representing 32 of the 41 described meliphagid genera listed in Sibley and Monroe (1990). To test for intraspecific sequence variation, multiple individuals were sampled for 10 species. Nine species, representing five genera, of the Pardalotidae (sensu Sibley and Monroe, 1990), the apparent sister group of the Meliphagidae (Christidis and Schodde, 1991; Sibley and Ahlquist, 1985), were also sampled. To establish monophyly of the

Results

The total alignment of sequences (including gaps and indels) from CYTB (1046 bp), ND2 (1040 bp), 12S (910 bp), and FIB5 (547 bp) was 3843 base pairs (alignments are available from the first author’s website; see Acknowledgements). All sequences were deposited in GenBank under Accession Nos. AY353241, AY353242, AY488184, AY488485. The aligned nexus file and associated trees have been submitted to TreeBASE (http://www.treebase.org/treebase) and can also be downloaded from the author’s website (see

Comparative information content of the four loci

We believe the proportion of parsimony informative characters is an insufficient measure for comparing the phylogenetic utility of different data partitions, or for determining whether a partition should be downweighted for analysis (contra Allard et al., 1999; Sennblad and Bremer, 2000). Among the four loci we sampled, the more “parsimony informative” characters contained in a partition, the lower the average CI of characters in that partition (Table 2). An extreme example of this is ND2 third

Conclusions

The family Meliphagidae, as constituted here, is monophyletic, although the genera Anthochaera, Certhionyx, and Phylidonyris are not. Four major clades are recovered, and the overwhelming majority of honeyeater taxa belong to one of these four clades. The exception is the genus Acanthorhynchus (spinebills) which are sister to the remaining meliphagids and have no close relatives. The arid-adapted chats (Epthianura, Ashbyia) are nested deeply within the family, although their sister group is not

Acknowledgments

The authors thank the following individuals and institutions for their assistance in obtaining samples: Museum Victoria (R. O’Brien, B. Gilles, and J. Norman), Australian National Wildlife Collection (R. Schodde, J. Wombey, I. Mason, and B. Gill), Western Australia Museum (R. Johnstone), Museum of New Zealand (A. Tennyson), R. Fleischer, S. Pruett-Jones, and D. Armstrong. Funding for this project (to A.C.D.) was provided by the University of Chicago Hinds Fund, the American Ornithologists’

References (71)

  • L. Christidis

    Molecular and biochemical evidence for the origins and evolutionary radiations of the Australasian avifauna

  • L. Christidis et al.

    The Taxonomy and Species of Birds of Australia and its Territories. Australasian Ornithological Monographs No.1

    (1994)
  • L. Christidis et al.

    Relationships of Australo-Papuan songbirds (Aves: Passeriformes): protein evidence

    Ibis

    (1991)
  • L. Christidis et al.

    Relationships and radiations in the meliphagine honeyeaters, Meliphaga, Lichenostomus, and Xanthotis (Aves: Meliphagidae): protein evidence and its integration with morphology and ecogeography

    Austral. J. Zool.

    (1993)
  • L. Christidis et al.

    Affinities of the aberrant Australo-Papuan honeyeaters, Toxorhamphus, Oedistoma, Timeliopsis, and Epthianura: protein evidence

    Austral. J. Zool.

    (1993)
  • M.F. Clarke

    Co-operative breeding in Australasian birds: a review of hypotheses and evidence

    Corella

    (1995)
  • B.J. Coates et al.

    A Guide to the Birds of Wallacea

    (1997)
  • A. Cooper et al.

    Mass survival of birds across the Cretaceous-Tertiary boundary: molecular evidence

    Science

    (1997)
  • J. Cracraft

    Toward a phylogenetic classification of the recent birds of the world (Class Aves)

    Auk

    (1981)
  • J. Cracraft

    DNA hybridization and avian phylogenetics

    Evol. Biol.

    (1987)
  • J. Cracraft

    Avian evolution, Gondwana biogeography and the Cretaceous-Tertiary mass extinction event

    Proc. R. Soc. Lond. B

    (2001)
  • J. Cracraft et al.

    What is not a bird of paradise? Molecular and morphological evidence places Macgregoria in the Meliphagidae and the Cnemophilinae near the base of the corvoid tree

    Proc. R. Soc. Lond. B

    (2000)
  • C.W. Cunningham

    Can three incongruence tests predict when data should be combined?

    Mol. Biol. Evol.

    (1997)
  • P.G. Ericson et al.

    A Gondwanan origin of passerine birds supported by DNA sequences of the endemic New Zealand wrens

    Proc. R. Soc. Lond. B

    (2002)
  • J.S. Farris et al.

    Constructing a significance test for incongruence

    Syst. Biol.

    (1995)
  • J.S. Farris et al.

    Testing significance of incongruence

    Cladistics

    (1995)
  • N. Goldman et al.

    Likelihood-based tests of topologies in phylogenetics

    Syst. Biol.

    (2000)
  • J. Gould

    The Birds of Australia and the Adjacent Islands

    (1838)
  • J. Harshman

    Reweaving the tapestry: what can we learn from Sibley and Ahlquist (1990)?

    Auk

    (1994)
  • S.B. Hedges et al.

    Continental breakup and the ordinal diversification of birds and mammals

    Nature

    (1996)
  • K. Helm-Bychowski et al.

    Recovering phylogenetic signal from DNA sequences: relationships within the Corvine assemblage (Class Aves) as inferred from complete sequences of the mitochondrial DNA cytochrome-b gene

    Mol. Biol. Evol

    (1993)
  • P. Houde

    Critical evaluation of DNA hybridization studies in avian systematics

    Auk

    (1987)
  • Huelsenbeck, J.P., 2000. MRBAYES: Bayesian inference of phylogeny. Distributed by the author, Department of Biology,...
  • J.P. Huelsenbeck et al.

    Application of the likelihood function in phylogenetics

  • J.P. Huelsenbeck et al.

    Phylogeny estimation and hypothesis testing using maximum likelihood

    Ann. Rev. Ecol. Syst.

    (1997)
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