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17 - Strings and Evolutionary Trees

from IV - Currents, Cousins, and Cameos

Published online by Cambridge University Press:  23 June 2010

Dan Gusfield
Affiliation:
University of California, Davis
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Summary

The dominant view of the evolution of life is that all existing organisms are derived from some common ancestor and that a new species arises by a splitting of one population into two (or more) populations that do not cross-breed, rather than by a mixing of two populations into one. Therefore, the high level history of life is ideally organized and displayed as a rooted, directed tree. The extant species (and some of the extinct species) are represented at the leaves of the tree, each internal node represents a point when the history of two sets of species diverged (or represents a common ancestor of those species), the length and direction of each edge represents the passage of time or the evolutionary events that occur in that time, and so the path from the root of the tree to each leaf represents the evolutionary history of the organisms represented there. To quote Darwin

… the great Tree of Life fills with its dead and broken branches the crust of the earth, and covers the surface with its ever-branching and beautiful ramifications.

[119]

This view of the history of life as a tree must frequently be modified when considering the evolution of viruses, or even bacteria or individual genes, but remains the dominant way that high-level evolution is viewed in current biology. Hundreds (may be thousands) of papers are published yearly that depict deduced evolutionary trees.

Type
Chapter
Information
Algorithms on Strings, Trees and Sequences
Computer Science and Computational Biology
, pp. 447 - 479
Publisher: Cambridge University Press
Print publication year: 1997

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  • Strings and Evolutionary Trees
  • Dan Gusfield, University of California, Davis
  • Book: Algorithms on Strings, Trees, and Sequences
  • Online publication: 23 June 2010
  • Chapter DOI: https://doi.org/10.1017/CBO9780511574931.021
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  • Strings and Evolutionary Trees
  • Dan Gusfield, University of California, Davis
  • Book: Algorithms on Strings, Trees, and Sequences
  • Online publication: 23 June 2010
  • Chapter DOI: https://doi.org/10.1017/CBO9780511574931.021
Available formats
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Save book to Google Drive

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  • Strings and Evolutionary Trees
  • Dan Gusfield, University of California, Davis
  • Book: Algorithms on Strings, Trees, and Sequences
  • Online publication: 23 June 2010
  • Chapter DOI: https://doi.org/10.1017/CBO9780511574931.021
Available formats
×