Skip to main content

Thank you for visiting nature.com. You are using a browser version with limited support for CSS. To obtain the best experience, we recommend you use a more up to date browser (or turn off compatibility mode in Internet Explorer). In the meantime, to ensure continued support, we are displaying the site without styles and JavaScript.

  • Review Article
  • Published:

Induced pluripotent stem cells in disease modelling and drug discovery

Abstract

The derivation of induced pluripotent stem cells (iPSCs) over a decade ago sparked widespread enthusiasm for the development of new models of human disease, enhanced platforms for drug discovery and more widespread use of autologous cell-based therapy. Early studies using directed differentiation of iPSCs frequently uncovered cell-level phenotypes in monogenic diseases, but translation to tissue-level and organ-level diseases has required development of more complex, 3D, multicellular systems. Organoids and human–rodent chimaeras more accurately mirror the diverse cellular ecosystems of complex tissues and are being applied to iPSC disease models to recapitulate the pathobiology of a broad spectrum of human maladies, including infectious diseases, genetic disorders and cancer.

This is a preview of subscription content, access via your institution

Access options

Buy this article

Prices may be subject to local taxes which are calculated during checkout

Fig. 1: Progress in therapies based on iPSCs.
Fig. 2: Application of organoids derived from iPSCs to disease modelling and drug discovery.
Fig. 3: Chimeric models based on iPSCs.

Similar content being viewed by others

References

  1. Park, I. H. et al. Reprogramming of human somatic cells to pluripotency with defined factors. Nature 451, 141–146 (2008).

    CAS  PubMed  Google Scholar 

  2. Yu, J. et al. Induced pluripotent stem cell lines derived from human somatic cells. Science 318, 1917–1920 (2007).

    CAS  PubMed  Google Scholar 

  3. Takahashi, K. et al. Induction of pluripotent stem cells from adult human fibroblasts by defined factors. Cell 131, 861–872 (2007). References 1–3 provide the first descriptions of iPSCs from human cells.

    CAS  PubMed  Google Scholar 

  4. Takahashi, K. & Yamanaka, S. Induction of pluripotent stem cells from mouse embryonic and adult fibroblast cultures by defined factors. Cell 126, 663–676 (2006). This study presents the first description of iPSCs.

    CAS  PubMed  Google Scholar 

  5. Thomson, J. A. et al. Embryonic stem cell lines derived from human blastocysts. Science 282, 1145–1147 (1998). This paper describes the isolation of human ESCs.

    CAS  PubMed  Google Scholar 

  6. Zhang, S. C., Wernig, M., Duncan, I. D., Brustle, O. & Thomson, J. A. In vitro differentiation of transplantable neural precursors from human embryonic stem cells. Nat. Biotechnol. 19, 1129–1133 (2001).

    CAS  PubMed  Google Scholar 

  7. Reubinoff, B. E. et al. Neural progenitors from human embryonic stem cells. Nat. Biotechnol. 19, 1134–1140 (2001).

    CAS  PubMed  Google Scholar 

  8. He, J. Q., Ma, Y., Lee, Y., Thomson, J. A. & Kamp, T. J. Human embryonic stem cells develop into multiple types of cardiac myocytes: action potential characterization. Circ. Res. 93, 32–39 (2003).

    CAS  PubMed  Google Scholar 

  9. Assady, S. et al. Insulin production by human embryonic stem cells. Diabetes 50, 1691–1697 (2001).

    CAS  PubMed  Google Scholar 

  10. Kaufman, D. S., Hanson, E. T., Lewis, R. L., Auerbach, R. & Thomson, J. A. Hematopoietic colony-forming cells derived from human embryonic stem cells. Proc. Natl Acad. Sci. USA 98, 10716–10721 (2001).

    CAS  PubMed  PubMed Central  Google Scholar 

  11. Chadwick, K. et al. Cytokines and BMP-4 promote hematopoietic differentiation of human embryonic stem cells. Blood 102, 906–915 (2003).

    CAS  PubMed  Google Scholar 

  12. Eiges, R. et al. Developmental study of fragile X syndrome using human embryonic stem cells derived from preimplantation genetically diagnosed embryos. Cell Stem Cell 1, 568–577 (2007).

    CAS  PubMed  Google Scholar 

  13. Tulpule, A. et al. Knockdown of Fanconi anemia genes in human embryonic stem cells reveals early developmental defects in the hematopoietic lineage. Blood 115, 3453–3462 (2010).

    CAS  PubMed  PubMed Central  Google Scholar 

  14. Urbach, A., Schuldiner, M. & Benvenisty, N. Modeling for Lesch-Nyhan disease by gene targeting in human embryonic stem cells. Stem Cells 22, 635–641 (2004).

    CAS  PubMed  Google Scholar 

  15. Ebert, A. D. et al. Induced pluripotent stem cells from a spinal muscular atrophy patient. Nature 457, 277–280 (2009).

    CAS  PubMed  Google Scholar 

  16. Moretti, A. et al. Patient-specific induced pluripotent stem-cell models for long-QT syndrome. N. Engl. J. Med. 363, 1397–1409 (2010).

    CAS  PubMed  Google Scholar 

  17. Park, I. H. et al. Disease-specific induced pluripotent stem cells. Cell 134, 877–886 (2008).This study represents an early example of reprogramming of diseased somatic cells to generate iPSCs.

    CAS  PubMed  PubMed Central  Google Scholar 

  18. Maehr, R. et al. Generation of pluripotent stem cells from patients with type 1 diabetes. Proc. Natl Acad. Sci. USA 106, 15768–15773 (2009).

    CAS  PubMed  PubMed Central  Google Scholar 

  19. Brennand, K. J. et al. Modelling schizophrenia using human induced pluripotent stem cells. Nature 473, 221–225 (2011).

    CAS  PubMed  PubMed Central  Google Scholar 

  20. Lee, G. et al. Modelling pathogenesis and treatment of familial dysautonomia using patient-specific iPSCs. Nature 461, 402–406 (2009).

    CAS  PubMed  PubMed Central  Google Scholar 

  21. Liu, G. H. et al. Modelling Fanconi anemia pathogenesis and therapeutics using integration-free patient-derived iPSCs. Nat. Commun. 5, 4330 (2014).

    CAS  PubMed  Google Scholar 

  22. Robinton, D. A. & Daley, G. Q. The promise of induced pluripotent stem cells in research and therapy. Nature 481, 295–305 (2012).

    CAS  PubMed  PubMed Central  Google Scholar 

  23. Shi, Y., Inoue, H., Wu, J. C. & Yamanaka, S. Induced pluripotent stem cell technology: a decade of progress. Nat. Rev. Drug Discov. 16, 115–130 (2017).

    CAS  PubMed  Google Scholar 

  24. Itzhaki, I. et al. Modelling the long QT syndrome with induced pluripotent stem cells. Nature 471, 225–229 (2011).

    CAS  PubMed  Google Scholar 

  25. Lee, G. et al. Large-scale screening using familial dysautonomia induced pluripotent stem cells identifies compounds that rescue IKBKAP expression. Nat. Biotechnol. 30, 1244–1248 (2012).

    CAS  PubMed  PubMed Central  Google Scholar 

  26. Liu, C., Oikonomopoulos, A., Sayed, N. & Wu, J. C. Modeling human diseases with induced pluripotent stem cells: from 2D to 3D and beyond. Development 145, dev156166 (2018).

    PubMed  PubMed Central  Google Scholar 

  27. McCauley, H. A. & Wells, J. M. Pluripotent stem cell-derived organoids: using principles of developmental biology to grow human tissues in a dish. Development 144, 958–962 (2017).

    CAS  PubMed  PubMed Central  Google Scholar 

  28. Dutta, D., Heo, I. & Clevers, H. Disease modeling in stem cell-derived 3D organoid systems. Trends Mol. Med. 23, 393–410 (2017).

    CAS  PubMed  Google Scholar 

  29. Quadrato, G., Brown, J. & Arlotta, P. The promises and challenges of human brain organoids as models of neuropsychiatric disease. Nat. Med. 22, 1220–1228 (2016).

    CAS  PubMed  Google Scholar 

  30. McCracken, K. W. et al. Modelling human development and disease in pluripotent stem-cell-derived gastric organoids. Nature 516, 400–404 (2014).

    CAS  PubMed  PubMed Central  Google Scholar 

  31. Lancaster, M. A. et al. Cerebral organoids model human brain development and microcephaly. Nature 501, 373–379 (2013).

    CAS  PubMed  Google Scholar 

  32. Mariani, J. et al. Modeling human cortical development in vitro using induced pluripotent stem cells. Proc. Natl Acad. Sci. USA 109, 12770–12775 (2012).References 31 and 32 describe early neural organoids derived from iPSCs.

    CAS  PubMed  PubMed Central  Google Scholar 

  33. Qian, X. et al. Brain-region-specific organoids using mini-bioreactors for modeling ZIKV exposure. Cell 165, 1238–1254 (2016).

    CAS  PubMed  PubMed Central  Google Scholar 

  34. Muguruma, K., Nishiyama, A., Kawakami, H., Hashimoto, K. & Sasai, Y. Self-organization of polarized cerebellar tissue in 3D culture of human pluripotent stem cells. Cell Rep. 10, 537–550 (2015).

    CAS  PubMed  Google Scholar 

  35. Jo, J. et al. Midbrain-like organoids from human pluripotent stem cells contain functional dopaminergic and neuromelanin-producing neurons. Cell Stem Cell 19, 248–257 (2016).

    CAS  PubMed  PubMed Central  Google Scholar 

  36. Quadrato, G. et al. Cell diversity and network dynamics in photosensitive human brain organoids. Nature 545, 48–53 (2017).

    CAS  PubMed  PubMed Central  Google Scholar 

  37. Li, Y. et al. Induction of expansion and folding in human cerebral organoids. Cell Stem Cell 20, 385–396 (2017).

    PubMed  Google Scholar 

  38. Sloan, S. A. et al. Human astrocyte maturation captured in 3D cerebral cortical spheroids derived from pluripotent stem cells. Neuron 95, 779–790 (2017).

    CAS  PubMed  PubMed Central  Google Scholar 

  39. Gabriel, E. et al. CPAP promotes timely cilium disassembly to maintain neural progenitor pool. EMBO J. 35, 803–819 (2016).

    CAS  PubMed  PubMed Central  Google Scholar 

  40. Mariani, J. et al. FOXG1-dependent dysregulation of GABA/glutamate neuron differentiation in autism spectrum disorders. Cell 162, 375–390 (2015).

    CAS  PubMed  PubMed Central  Google Scholar 

  41. Mellios, N. et al. MeCP2-regulated miRNAs control early human neurogenesis through differential effects on ERK and AKT signaling. Mol. Psychiatry 23, 1051–1065 (2018).

    CAS  PubMed  Google Scholar 

  42. Bershteyn, M. et al. Human iPSC-derived cerebral organoids model cellular features of lissencephaly and reveal prolonged mitosis of outer radial glia. Cell Stem Cell 20, 435–449 (2017).

    CAS  PubMed  PubMed Central  Google Scholar 

  43. Bian, S. et al. Genetically engineered cerebral organoids model brain tumor formation. Nat. Methods 15, 631–639 (2018).

    CAS  PubMed  PubMed Central  Google Scholar 

  44. Sato, T. et al. Single Lgr5 stem cells build crypt-villus structures in vitro without a mesenchymal niche. Nature 459, 262–265 (2009).

    CAS  PubMed  Google Scholar 

  45. Spence, J. R. et al. Directed differentiation of human pluripotent stem cells into intestinal tissue in vitro. Nature 470, 105–109 (2011).

    PubMed  Google Scholar 

  46. Workman, M. J. et al. Engineered human pluripotent-stem-cell-derived intestinal tissues with a functional enteric nervous system. Nat. Med. 23, 49–59 (2017).This study derives a combination of neural and intestinal cells from iPSCs to generate complex intestinal tissue.

    CAS  PubMed  Google Scholar 

  47. Rashid, S. T. et al. Modeling inherited metabolic disorders of the liver using human induced pluripotent stem cells. J. Clin. Invest. 120, 3127–3136 (2010).

    CAS  PubMed  PubMed Central  Google Scholar 

  48. Ogawa, M. et al. Directed differentiation of cholangiocytes from human pluripotent stem cells. Nat. Biotechnol. 33, 853–861 (2015).

    CAS  PubMed  Google Scholar 

  49. Sampaziotis, F. et al. Cholangiocytes derived from human induced pluripotent stem cells for disease modeling and drug validation. Nat. Biotechnol. 33, 845–852 (2015).

    CAS  PubMed  PubMed Central  Google Scholar 

  50. Crespo, M. et al. Colonic organoids derived from human induced pluripotent stem cells for modeling colorectal cancer and drug testing. Nat. Med. 23, 878–884 (2017).

    CAS  PubMed  PubMed Central  Google Scholar 

  51. Freedman, B. S. et al. Reduced ciliary polycystin-2 in induced pluripotent stem cells from polycystic kidney disease patients with PKD1 mutations. J. Am. Soc. Nephrol. 24, 1571–1586 (2013).

    CAS  PubMed  PubMed Central  Google Scholar 

  52. Xia, Y. et al. Directed differentiation of human pluripotent cells to ureteric bud kidney progenitor-like cells. Nat. Cell Biol. 15, 1507–1515 (2013).

    CAS  PubMed  Google Scholar 

  53. Takasato, M. et al. Kidney organoids from human iPS cells contain multiple lineages and model human nephrogenesis. Nature 526, 564–568 (2015).

    CAS  PubMed  Google Scholar 

  54. Freedman, B. S. et al. Modelling kidney disease with CRISPR-mutant kidney organoids derived from human pluripotent epiblast spheroids. Nat. Commun. 6, 8715 (2015).

    CAS  PubMed  Google Scholar 

  55. Li, Z. et al. 3D culture supports long-term expansion of mouse and human nephrogenic progenitors. Cell Stem Cell 19, 516–529 (2016).

    CAS  PubMed  PubMed Central  Google Scholar 

  56. Taguchi, A. & Nishinakamura, R. Higher-order kidney organogenesis from pluripotent stem cells. Cell Stem Cell 21, 730–746 (2017).

    CAS  PubMed  Google Scholar 

  57. Musah, S. et al. Mature induced-pluripotent-stem-cell-derived human podocytes reconstitute kidney glomerular-capillary-wall function on a chip. Nat. Biomed. Eng. 1, 0069 (2017).

    PubMed  PubMed Central  Google Scholar 

  58. McCauley, K. B. et al. Efficient derivation of functional human airway epithelium from pluripotent stem cells via temporal regulation of Wnt signaling. Cell Stem Cell 20, 844–857 (2017).

    CAS  PubMed  PubMed Central  Google Scholar 

  59. Jacob, A. et al. Differentiation of human pluripotent stem cells into functional lung alveolar epithelial cells. Cell Stem Cell 21, 472–488 (2017).References 58 and 59 demonstrate the derivation of complex lung organoids and their application in disease modelling.

    CAS  PubMed  PubMed Central  Google Scholar 

  60. Voges, H. K. et al. Development of a human cardiac organoid injury model reveals innate regenerative potential. Development 144, 1118–1127 (2017).

    CAS  PubMed  Google Scholar 

  61. Finkbeiner, S. R. et al. Transcriptome-wide analysis reveals hallmarks of human intestine development and maturation in vitro and in vivo. Stem Cell Rep. 4, 1140–1155 (2015).

    CAS  Google Scholar 

  62. Pagliuca, F. W. et al. Generation of functional human pancreatic beta cells in vitro. Cell 159, 428–439 (2014).

    CAS  PubMed  PubMed Central  Google Scholar 

  63. Ronaldson-Bouchard, K. et al. Advanced maturation of human cardiac tissue grown from pluripotent stem cells. Nature 556, 239–243 (2018). This study demonstrates the maturation of iPSC-derived cardiomyocytes from a fetal to an adult state.

    CAS  PubMed  PubMed Central  Google Scholar 

  64. Hoang, P., Wang, J., Conklin, B. R., Healy, K. E. & Ma, Z. Generation of spatial-patterned early-developing cardiac organoids using human pluripotent stem cells. Nat. Protoc. 13, 723–737 (2018).

    CAS  PubMed  PubMed Central  Google Scholar 

  65. Abilez, O. J. et al. Passive stretch induces structural and functional maturation of engineered heart muscle as predicted by computational modeling. Stem Cells 36, 265–277 (2018).

    CAS  PubMed  Google Scholar 

  66. Mills, R. J. et al. Functional screening in human cardiac organoids reveals a metabolic mechanism for cardiomyocyte cell cycle arrest. Proc. Natl Acad. Sci. USA 114, E8372–E8381 (2017).

    CAS  PubMed  PubMed Central  Google Scholar 

  67. Wang, G. et al. Modeling the mitochondrial cardiomyopathy of Barth syndrome with induced pluripotent stem cell and heart-on-chip technologies. Nat. Med. 20, 616–623 (2014).

    CAS  PubMed  PubMed Central  Google Scholar 

  68. Brown, J. A. et al. Recreating blood-brain barrier physiology and structure on chip: a novel neurovascular microfluidic bioreactor. Biomicrofluidics 9, 054124 (2015).

    PubMed  PubMed Central  Google Scholar 

  69. Mansour, A. A. et al. An in vivo model of functional and vascularized human brain organoids. Nat. Biotechnol. 36, 432–441 (2018).

    CAS  PubMed  PubMed Central  Google Scholar 

  70. Takebe, T. et al. Vascularized and functional human liver from an iPSC-derived organ bud transplant. Nature 499, 481–484 (2013).

    CAS  PubMed  Google Scholar 

  71. DeBoever, C. et al. Large-scale profiling reveals the influence of genetic variation on gene expression in human induced pluripotent stem cells. Cell Stem Cell 20, 533–546 (2017).

    CAS  PubMed  PubMed Central  Google Scholar 

  72. Warren, C. R. et al. Induced pluripotent stem cell differentiation enables functional validation of GWAS variants in metabolic disease. Cell Stem Cell 20, 547–557 (2017).

    CAS  PubMed  Google Scholar 

  73. Turco, M. Y. et al. Trophoblast organoids as a model for maternal-fetal interactions during human placentation. Nature 564, 263–267 (2018).

    CAS  PubMed  PubMed Central  Google Scholar 

  74. Seok, J. et al. Genomic responses in mouse models poorly mimic human inflammatory diseases. Proc. Natl Acad. Sci. USA 110, 3507–3512 (2013).

    CAS  PubMed  PubMed Central  Google Scholar 

  75. Chen, P., Stanojcic, M. & Jeschke, M. G. Differences between murine and human sepsis. Surg. Clin. North Am. 94, 1135–1149 (2014).

    PubMed  PubMed Central  Google Scholar 

  76. Zhou, T. et al. High-content screening in hPSC-neural progenitors identifies drug candidates that inhibit Zika virus infection in fetal-like organoids and adult brain. Cell Stem Cell 21, 274–283 (2017).

    CAS  PubMed  PubMed Central  Google Scholar 

  77. Ni, Z. et al. Human pluripotent stem cells produce natural killer cells that mediate anti-HIV-1 activity by utilizing diverse cellular mechanisms. J. Virol. 85, 43–50 (2011).

    CAS  PubMed  Google Scholar 

  78. Ni, Z., Knorr, D. A., Bendzick, L., Allred, J. & Kaufman, D. S. Expression of chimeric receptor CD4zeta by natural killer cells derived from human pluripotent stem cells improves in vitro activity but does not enhance suppression of HIV infection in vivo. Stem Cells 32, 1021–1031 (2014).

    CAS  PubMed  PubMed Central  Google Scholar 

  79. Ye, L. et al. Seamless modification of wild-type induced pluripotent stem cells to the natural CCR5Delta32 mutation confers resistance to HIV infection. Proc. Natl Acad. Sci. USA 111, 9591–9596 (2014).

    CAS  PubMed  PubMed Central  Google Scholar 

  80. Lafaille, F. G. et al. Impaired intrinsic immunity to HSV-1 in human iPSC-derived TLR3-deficient CNS cells. Nature 491, 769–773 (2012).

    CAS  PubMed  PubMed Central  Google Scholar 

  81. Lang, J. et al. An hPSC-derived tissue-resident macrophage model reveals differential responses of macrophages to ZIKV and DENV infection. Stem Cell Rep. 11, 348–362 (2018).

    CAS  Google Scholar 

  82. Garcez, P. P. et al. Zika virus impairs growth in human neurospheres and brain organoids. Science 352, 816–818 (2016).

    CAS  PubMed  Google Scholar 

  83. Cugola, F. R. et al. The Brazilian Zika virus strain causes birth defects in experimental models. Nature 534, 267–271 (2016).

    CAS  PubMed  PubMed Central  Google Scholar 

  84. Gabriel, E. et al. Recent Zika virus isolates induce premature differentiation of neural progenitors in human brain organoids. Cell Stem Cell 20, 397–406 (2017).

    CAS  PubMed  Google Scholar 

  85. Nowakowski, T. J. et al. Expression analysis highlights AXL as a candidate Zika virus entry receptor in neural stem cells. Cell Stem Cell 18, 591–596 (2016).

    CAS  PubMed  PubMed Central  Google Scholar 

  86. Wells, M. F. et al. Genetic ablation of AXL does not protect human neural progenitor cells and cerebral organoids from Zika virus infection. Cell Stem Cell 19, 703–708 (2016).References 82–86 apply neural organoids to modelling Zika virus pathogenesis.

    CAS  PubMed  Google Scholar 

  87. Finkbeiner, S. R. et al. Stem cell-derived human intestinal organoids as an infection model for rotaviruses. mBio 3, e00159–12 (2012).

    CAS  PubMed  PubMed Central  Google Scholar 

  88. Chen, Y. W. et al. A three-dimensional model of human lung development and disease from pluripotent stem cells. Nat. Cell Biol. 19, 542–549 (2017).

    CAS  PubMed  PubMed Central  Google Scholar 

  89. Churin, Y. et al. Helicobacter pylori CagA protein targets the c-Met receptor and enhances the motogenic response. J. Cell Biol. 161, 249–255 (2003).

    CAS  PubMed  PubMed Central  Google Scholar 

  90. Leslie, J. L. et al. Persistence and toxin production by Clostridium difficile within human intestinal organoids result in disruption of epithelial paracellular barrier function. Infect. Immun. 83, 138–145 (2015).

    PubMed  Google Scholar 

  91. Paredes-Sabja, D., Shen, A. & Sorg, J. A. Clostridium difficile spore biology: sporulation, germination, and spore structural proteins. Trends Microbiol. 22, 406–416 (2014).

    CAS  PubMed  PubMed Central  Google Scholar 

  92. Forbester, J. L. et al. Interaction of Salmonella enterica serovar Typhimurium with intestinal organoids derived from human induced pluripotent stem cells. Infect. Immun. 83, 2926–2934 (2015).

    CAS  PubMed  PubMed Central  Google Scholar 

  93. Nadkarni, R. R. et al. Functional enterospheres derived in vitro from human pluripotent stem cells. Stem Cell Rep. 9, 897–912 (2017).

    CAS  Google Scholar 

  94. Sturgeon, C. M., Ditadi, A., Awong, G., Kennedy, M. & Keller, G. Wnt signaling controls the specification of definitive and primitive hematopoiesis from human pluripotent stem cells. Nat. Biotechnol. 32, 554–561 (2014).

    CAS  PubMed  PubMed Central  Google Scholar 

  95. Wang, L., Li, L., Menendez, P., Cerdan, C. & Bhatia, M. Human embryonic stem cells maintained in the absence of mouse embryonic fibroblasts or conditioned media are capable of hematopoietic development. Blood 105, 4598–4603 (2005).

    CAS  PubMed  Google Scholar 

  96. Tzannou, I. et al. Off-the-shelf virus-specific T cells to treat BK virus, human herpesvirus 6, cytomegalovirus, Epstein-Barr virus, and adenovirus infections after allogeneic hematopoietic stem-cell transplantation. J. Clin. Oncol. 35, 3547–3557 (2017).

    CAS  PubMed  PubMed Central  Google Scholar 

  97. Bollard, C. M. & Heslop, H. E. T cells for viral infections after allogeneic hematopoietic stem cell transplant. Blood 127, 3331–3340 (2016).

    CAS  PubMed  PubMed Central  Google Scholar 

  98. Donegan, J. J. & Lodge, D. J. Cell-based therapies for the treatment of schizophrenia. Brain Res. 1655, 262–269 (2017).

    CAS  PubMed  Google Scholar 

  99. Maude, S. L. et al. Tisagenlecleucel in children and young adults with B-cell lymphoblastic leukemia. N. Engl. J. Med. 378, 439–448 (2018).

    CAS  PubMed  PubMed Central  Google Scholar 

  100. Mandai, M. et al. Autologous induced stem-cell-derived retinal cells for macular degeneration. N. Engl. J. Med. 376, 1038–1046 (2017).

    CAS  PubMed  Google Scholar 

  101. Ditadi, A. et al. Human definitive haemogenic endothelium and arterial vascular endothelium represent distinct lineages. Nat. Cell Biol. 17, 580–591 (2015).

    CAS  PubMed  PubMed Central  Google Scholar 

  102. Kennedy, M. et al. T lymphocyte potential marks the emergence of definitive hematopoietic progenitors in human pluripotent stem cell differentiation cultures. Cell Rep. 2, 1722–1735 (2012).

    CAS  PubMed  Google Scholar 

  103. Wahlster, L. & Daley, G. Q. Progress towards generation of human haematopoietic stem cells. Nat. Cell Biol. 18, 1111–1117 (2016).

    CAS  PubMed  Google Scholar 

  104. Lu, Y. F. et al. Engineered murine HSCs reconstitute multi-lineage hematopoiesis and adaptive immunity. Cell Rep. 17, 3178–3192 (2016).

    CAS  PubMed  PubMed Central  Google Scholar 

  105. Kyba, M., Perlingeiro, R. C. & Daley, G. Q. HoxB4 confers definitive lymphoid-myeloid engraftment potential on embryonic stem cell and yolk sac hematopoietic progenitors. Cell 109, 29–37 (2002).

    CAS  PubMed  Google Scholar 

  106. Doulatov, S. et al. Induction of multipotential hematopoietic progenitors from human pluripotent stem cells via respecification of lineage-restricted precursors. Cell Stem Cell 13, 459–470 (2013).

    CAS  PubMed  Google Scholar 

  107. Doulatov, S. et al. Drug discovery for Diamond-Blackfan anemia using reprogrammed hematopoietic progenitors. Sci. Transl Med. 9, eaah5645 (2017).

    PubMed  PubMed Central  Google Scholar 

  108. Sugimura, R. et al. Haematopoietic stem and progenitor cells from human pluripotent stem cells. Nature 545, 432–438 (2017).This study provides a description of engraftable, functional, multilineage HSPCs derived from iPSCs.

    CAS  PubMed  PubMed Central  Google Scholar 

  109. Muller, L. U. et al. Overcoming reprogramming resistance of Fanconi anemia cells. Blood 119, 5449–5457 (2012).

    CAS  PubMed  PubMed Central  Google Scholar 

  110. Uchida, N. et al. Efficient generation of beta-globin-expressing erythroid cells using stromal cell-derived induced pluripotent stem cells from patients with sickle cell disease. Stem Cells 35, 586–596 (2017).

    CAS  PubMed  Google Scholar 

  111. Niu, X. et al. Combining single strand oligodeoxynucleotides and CRISPR/Cas9 to correct gene mutations in beta-thalassemia-induced pluripotent stem cells. J. Biol. Chem. 291, 16576–16585 (2016).

    CAS  PubMed  PubMed Central  Google Scholar 

  112. Davies, G., Duke, D., Grant, A. G., Kelly, S. A. & Hermon-Taylor, J. Growth of human digestive-tumour xenografts in athymic nude rats. Br. J. Cancer 43, 53–58 (1981).

    CAS  PubMed  PubMed Central  Google Scholar 

  113. Chao, M. P. et al. Human AML-iPSCs reacquire leukemic properties after differentiation and model clonal variation of disease. Cell Stem Cell 20, 329–344 (2017).

    CAS  PubMed  PubMed Central  Google Scholar 

  114. Kotini, A. G. et al. Stage-specific human induced pluripotent stem cells map the progression of myeloid transformation to transplantable leukemia. Cell Stem Cell 20, 315–328 (2017).

    CAS  PubMed  PubMed Central  Google Scholar 

  115. Munoz-Lopez, A. et al. Development refractoriness of MLL-rearranged human B cell acute leukemias to reprogramming into pluripotency. Stem Cell Rep. 7, 602–618 (2016).

    CAS  Google Scholar 

  116. Tan, Y. T. et al. Respecifying human iPSC-derived blood cells into highly engraftable hematopoietic stem and progenitor cells with a single factor. Proc. Natl Acad. Sci. USA 115, 2180–2185 (2018).

    CAS  PubMed  PubMed Central  Google Scholar 

  117. Taoka, K. et al. Using patient-derived iPSCs to develop humanized mouse models for chronic myelomonocytic leukemia and therapeutic drug identification, including liposomal clodronate. Sci. Rep. 8, 15855 (2018).

    PubMed  PubMed Central  Google Scholar 

  118. Stricker, S. H. et al. Widespread resetting of DNA methylation in glioblastoma-initiating cells suppresses malignant cellular behavior in a lineage-dependent manner. Genes Dev. 27, 654–669 (2013).

    CAS  PubMed  PubMed Central  Google Scholar 

  119. Lee, D. F. et al. Modeling familial cancer with induced pluripotent stem cells. Cell 161, 240–254 (2015).

    CAS  PubMed  PubMed Central  Google Scholar 

  120. Aguayo, A. J., Kasarjian, J., Skamene, E., Kongshavn, P. & Bray, G. M. Myelination of mouse axons by Schwann cells transplanted from normal and abnormal human nerves. Nature 268, 753–755 (1977).

    CAS  PubMed  Google Scholar 

  121. Barker, R. A., Parmar, M., Studer, L. & Takahashi, J. Human trials of stem cell-derived dopamine neurons for Parkinson’s disease: dawn of a new era. Cell Stem Cell 21, 569–573 (2017).

    CAS  PubMed  Google Scholar 

  122. Espuny-Camacho, I. et al. Pyramidal neurons derived from human pluripotent stem cells integrate efficiently into mouse brain circuits in vivo. Neuron 77, 440–456 (2013).

    CAS  PubMed  Google Scholar 

  123. Yuan, T. et al. Human induced pluripotent stem cell-derived neural stem cells survive, migrate, differentiate, and improve neurologic function in a rat model of middle cerebral artery occlusion. Stem Cell Res. Ther. 4, 73 (2013).

    CAS  PubMed  PubMed Central  Google Scholar 

  124. Jensen, M. B., Yan, H., Krishnaney-Davison, R., Al Sawaf, A. & Zhang, S. C. Survival and differentiation of transplanted neural stem cells derived from human induced pluripotent stem cells in a rat stroke model. J. Stroke Cerebrovasc. Dis. 22, 304–308 (2013).

    PubMed  Google Scholar 

  125. Sundberg, M. et al. Improved cell therapy protocols for Parkinson’s disease based on differentiation efficiency and safety of hESC-, hiPSC-, and non-human primate iPSC-derived dopaminergic neurons. Stem Cells 31, 1548–1562 (2013).

    CAS  PubMed  Google Scholar 

  126. Windrem, M. S. et al. Human iPSC glial mouse chimeras reveal glial contributions to schizophrenia. Cell Stem Cell 21, 195–208 (2017).

    CAS  PubMed  PubMed Central  Google Scholar 

  127. Watson, C. L. et al. An in vivo model of human small intestine using pluripotent stem cells. Nat. Med. 20, 1310–1314 (2014).

    CAS  PubMed  PubMed Central  Google Scholar 

  128. Yang, J. et al. Generation of human liver chimeric mice with hepatocytes from familial hypercholesterolemia induced pluripotent stem cells. Stem Cell Rep. 8, 605–618 (2017).

    Google Scholar 

  129. Parent, A. V. et al. Generation of functional thymic epithelium from human embryonic stem cells that supports host T cell development. Cell Stem Cell 13, 219–229 (2013).

    CAS  PubMed  Google Scholar 

  130. Sun, X. et al. Directed differentiation of human embryonic stem cells into thymic epithelial progenitor-like cells reconstitutes the thymic microenvironment in vivo. Cell Stem Cell 13, 230–236 (2013).

    CAS  PubMed  Google Scholar 

  131. Ma, H., Wert, K. J., Shvartsman, D., Melton, D. A. & Jaenisch, R. Establishment of human pluripotent stem cell-derived pancreatic beta-like cells in the mouse pancreas. Proc. Natl Acad. Sci. USA 115, 3924–3929 (2018).

    CAS  PubMed  PubMed Central  Google Scholar 

  132. Themeli, M. et al. Generation of tumor-targeted human T lymphocytes from induced pluripotent stem cells for cancer therapy. Nat. Biotechnol. 31, 928–933 (2013).

    CAS  PubMed  PubMed Central  Google Scholar 

  133. Maeda, T. et al. Regeneration of CD8alphabeta T cells from T cell-derived iPSC imparts potent tumor antigen-specific cytotoxicity. Cancer Res. 76, 6839–6850 (2016).

    CAS  PubMed  Google Scholar 

  134. Wakao, H. et al. Expansion of functional human mucosal-associated invariant T cells via reprogramming to pluripotency and redifferentiation. Cell Stem Cell 12, 546–558 (2013).

    CAS  PubMed  Google Scholar 

  135. Li, Y., Hermanson, D. L., Moriarity, B. S. & Kaufman, D. S. Human iPSC-derived natural killer cells engineered with chimeric antigen receptors enhance anti-tumor activity. Cell Stem Cell 23, 181–192 (2018).

    CAS  PubMed  PubMed Central  Google Scholar 

  136. Vanuytsel, K. et al. Induced pluripotent stem cell-based mapping of beta-globin expression throughout human erythropoietic development. Blood Adv. 2, 1998–2011 (2018).

    CAS  PubMed  PubMed Central  Google Scholar 

  137. Pashos, E. E. et al. Large, diverse population cohorts of hiPSCs and derived hepatocyte-like cells reveal functional genetic variation at blood lipid-associated loci. Cell Stem Cell 20, 558–570 (2017).

    CAS  PubMed  PubMed Central  Google Scholar 

  138. Kilpinen, H. et al. Common genetic variation drives molecular heterogeneity in human iPSCs. Nature 546, 370–375 (2017).This study highlights the genetic variability between iPSC lines derived from different individuals that can have an impact on differentiation.

    CAS  PubMed  PubMed Central  Google Scholar 

  139. Yamaguchi, T. et al. Interspecies organogenesis generates autologous functional islets. Nature 542, 191–196 (2017).

    CAS  PubMed  Google Scholar 

  140. Yang, Y. et al. Derivation of pluripotent stem cells with in vivo embryonic and extraembryonic potency. Cell 169, 243–257 (2017).

    CAS  PubMed  PubMed Central  Google Scholar 

  141. Shultz, L. D. et al. Human lymphoid and myeloid cell development in NOD/LtSz-scid IL2R gamma null mice engrafted with mobilized human hemopoietic stem cells. J. Immunol. 174, 6477–6489 (2005).

    CAS  PubMed  Google Scholar 

  142. Bosma, G. C., Custer, R. P. & Bosma, M. J. A severe combined immunodeficiency mutation in the mouse. Nature 301, 527–530 (1983).

    CAS  PubMed  Google Scholar 

  143. Greiner, D. L. et al. Improved engraftment of human spleen cells in NOD/LtSz-scid/scid mice as compared with C. B-17-scid/scid mice. Am. J. Pathol. 146, 888–902 (1995).

    CAS  PubMed  PubMed Central  Google Scholar 

  144. Palchaudhuri, R. et al. Non-genotoxic conditioning for hematopoietic stem cell transplantation using a hematopoietic-cell-specific internalizing immunotoxin. Nat. Biotechnol. 34, 738–745 (2016).

    CAS  PubMed  PubMed Central  Google Scholar 

  145. McIntosh, B. E. et al. Nonirradiated NOD,B6. SCID Il2rgamma−/− Kit(W41/W41) (NBSGW) mice support multilineage engraftment of human hematopoietic cells. Stem Cell Rep. 4, 171–180 (2015).

    CAS  Google Scholar 

  146. Kyttala, A. et al. Genetic variability overrides the impact of parental cell type and determines iPSC differentiation potential. Stem Cell Rep. 6, 200–212 (2016).

    Google Scholar 

  147. Kajiwara, M. et al. Donor-dependent variations in hepatic differentiation from human-induced pluripotent stem cells. Proc. Natl Acad. Sci. USA 109, 12538–12543 (2012).

    CAS  PubMed  PubMed Central  Google Scholar 

  148. Hockemeyer, D. & Jaenisch, R. Induced pluripotent stem cells meet genome editing. Cell Stem Cell 18, 573–586 (2016).

    CAS  PubMed  PubMed Central  Google Scholar 

  149. Chen, J. R. et al. Effects of genetic correction on the differentiation of hair cell-like cells from iPSCs with MYO15A mutation. Cell Death Differ. 23, 1347–1357 (2016).

    CAS  PubMed  PubMed Central  Google Scholar 

  150. Mandai, M., Kurimoto, Y. & Takahashi, M. Autologous induced stem-cell-derived retinal cells for macular degeneration. N. Engl. J. Med. 377, 792–793 (2017).

    PubMed  Google Scholar 

Download references

Acknowledgements

The authors apologize to researchers whose studies could not be included owing to space constraints.

Reviewer information

Nature Reviews Genetics thanks J. Wu, L. Studer, C. Svendsen and other anonymous reviewer(s) for their contribution to the peer review of this work.

Author information

Authors and Affiliations

Authors

Contributions

The authors contributed equally to all aspects of the article.

Corresponding author

Correspondence to George Q. Daley.

Ethics declarations

Competing interests

G.Q.D. holds intellectual property relevant to development of cell and drug therapies based on iPSC technology.

Additional information

Publisher’s note

Springer Nature remains neutral with regard to jurisdictional claims in published maps and institutional affiliations.

Glossary

Induced pluripotent stem cells

(iPSCs). Pluripotent cells derived from terminally differentiated somatic cells generated by reprogramming via introduction of a defined set of transcription factors.

Directed differentiation

The use of morphogens and environmental signals to direct the state of pluripotent cells towards a desired lineage.

Cell state conversion

The process by which a cell is converted from one identity to another, frequently via the expression of exogenous transcription factors.

Tissue engineering

The synthetic recapitulation of the cellular composition and matrix structure of a target tissue.

Xenotransplantation

The transplantation of cells from one species into a different species.

Morphogen

A growth factor or chemical signal that regulates cellular differentiation or tissue patterning.

Cas9

A bacterial DNA endonuclease that uses RNAs to localize and cleave targeted sequences within a genome. This enzyme has been exploited as a technology for precise genomic editing to introduce or correct specific genetic mutations in induced pluripotent stem cells.

Organ-on-a-chip

An experimental system in which tissue architecture and cellular composition are assembled on a fabricated synthetic matrix.

Batch effects

Variations between experimental replicates due to differences in cellular source or reagent lot.

Blasts

Undifferentiated, immature haematopoietic cells. They can be either rare, normal haematopoietic progenitors within healthy haematopoietic organs or transformed leukaemic cells arrested at an early state of differentiation.

Immunotherapy

A therapeutic approach using modulation of the immune system.

Chimeric antigen receptor T cells

(CAR T cells). Genetically manipulated T cells bearing a modified T cell receptor against a specific target.

Quantitative trait loci

(QTLs). DNA sequences whose variation contributes to the manifested heterogeneity of a quantitative polygenic trait.

Isogenic

A term to describe two cells, tissues or organisms that have the same genotype.

Rights and permissions

Reprints and permissions

About this article

Check for updates. Verify currency and authenticity via CrossMark

Cite this article

Rowe, R.G., Daley, G.Q. Induced pluripotent stem cells in disease modelling and drug discovery. Nat Rev Genet 20, 377–388 (2019). https://doi.org/10.1038/s41576-019-0100-z

Download citation

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1038/s41576-019-0100-z

This article is cited by

Search

Quick links

Nature Briefing: Translational Research

Sign up for the Nature Briefing: Translational Research newsletter — top stories in biotechnology, drug discovery and pharma.

Get what matters in translational research, free to your inbox weekly. Sign up for Nature Briefing: Translational Research