Correction to: Nature Genetics https://doi.org/10.1038/s41588-020-0693-3, published online 9 September 2020.

The version of this article initially published contained statements that data obtained through GISAID were used. No data used in the COVID-3D online resource were accessed through GISAID. Accordingly, mentions of GISAID in Supplementary Fig. 2 and the Supplementary Methods have been removed; the reference to the GISAID resource has been removed from the main text; and “variants detected in more than 125,000 SARS-CoV-2 genomic sequences” has been changed to “more than 11,000 variants detected in circulating SARS-CoV-2 genomic sequences.” The errors have been corrected in the HTML and PDF versions of the article.