Issue 8, 2002

Novel uridin-2′-yl carbamates: synthesis, incorporation into oligodeoxyribonucleotides, and remarkable fluorescence properties of 2′-pyren-1-ylmethylcarbamate

Abstract

A convenient method for the preparation of uridin-2′-yl carbamate derivatives is described. The stable 2′-O-(imidazol-1-ylcarbonyl)-3′,5′-O-(tetraisopropyldisiloxane-1,3-diyl)uridine, prepared from uridine, was treated with primary or secondary aliphatic amines to give 2′-carbamates in high yield. After 3′,5′-O-deprotection with triethylamine trihydrofluoride, 5′-O-dimethoxytritylation, and 3′-O-phosphitylation with bis(N,N-diisopropylamino)-2-cyanoethoxyphosphine, modified phosphoramidites were obtained and used in machine-assisted synthesis of modified oligodeoxynucleotides containing uridin-2′-yl carbamate residues bearing various N-substituents. The influence of uridin-2′-yl carbamate moieties on the stability of modified oligonucleotide duplexes with complementary DNA and RNA was studied by thermal denaturation experiments. Pyrene-modified oligonucleotides showed a considerable increase in fluorescence intensity upon hybridisation to complementary RNA and interesting binding properties when hybridised to a mismatched DNA.

Graphical abstract: Novel uridin-2′-yl carbamates: synthesis, incorporation into oligodeoxyribonucleotides, and remarkable fluorescence properties of 2′-pyren-1-ylmethylcarbamate

Supplementary files

Article information

Article type
Paper
Submitted
14 Dec 2001
Accepted
06 Mar 2002
First published
25 Mar 2002

J. Chem. Soc., Perkin Trans. 1, 2002, 1092-1104

Novel uridin-2′-yl carbamates: synthesis, incorporation into oligodeoxyribonucleotides, and remarkable fluorescence properties of 2′-pyren-1-ylmethylcarbamate

V. A. Korshun, D. A. Stetsenko and M. J. Gait, J. Chem. Soc., Perkin Trans. 1, 2002, 1092 DOI: 10.1039/B111434B

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