Abstract
Multi-color bioluminescence is developed using the introduction of single/double disulfide bridges in firefly luciferase. The bioluminescence reaction, which uses luciferin, Mg2+-ATP and molecular oxygen to yield an electronically excited oxyluciferin, is carried out by the luciferase and emits visible light. The bioluminescence color of firefly luciferases is determined by the luciferase sequence and assay conditions. It has been proposed that the stability of a protein may increase through the introduction of a disulfide bridge that decreases the configurational entropy of unfolding. Single and double disulfide bridges are introduced into Photinus pyralis firefly luciferase to make separate mutant enzymes with a single/double bridge (C81–A105C, L306C–L309C, P451C–V469C; C81–A105C/P451C–V469C, and A296C–A326C/P451C–V469C). By introduction of disulfide bridges using site-directed mutagenesis in Photinus pyralis luciferase the color of emitted light was changed to red or kept in different extents. The bioluminescence color shift occurred with displacement of a critical loop in the luciferase structure without any change in green emitter mutants. Thermodynamic analysis revealed that among mutants, L306C–L309C shows a remarkable stability against urea denaturation and also a considerable increase in kinetic stability and a clear shift in bioluminescence spectra towards red.
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References
L. F. Greer III, A. A. Szalay, Imaging of light emission from the expression of luciferases in living cells and organisms: a review, Luminescence, 2002, 17, 43–74.
J. Hastings, Chemistries and colors of bioluminescent reactions: a review, Gene, 1996, 173, 5–11.
A. B. Lall, D. S. F. Ventura, E. J. H. Bechara, J. M. de Souza, P. Colepicolo-Neto, V. R. Viviani, Spectral correspondence between visual spectral sensitivity and bioluminescence emission spectra in the click beetle pyrophorus punctatissimus (coleoptera: elateridae), J. Insect Physiol., 2000, 46, 1137–1141.
R. E. Schmitter, D. Njus, F. M. Sulzman, V. D. Gooch, J. Hastings, Dinoflagellate bioluminescence: a comparative study of in vitro components, J. Cell. Physiol., 1976, 87, 123–134.
V. Viviani, The origin, diversity, and structure function relationships of insect luciferases, Cell. Mol. Life Sci., 2002, 59, 1833–1850.
V. Viviani, A. Silva, G. Perez, R. Santelli, E. Bechara, F. Reinach, Cloning and molecular characterization of the cDNA for the Brazilian larval click-beetle pyrearinus termitilluminans luciferase, Photochem. Photobiol., 1999, 70, 254–260.
M. Deluca, W. McElroy, Purification and properties of firefly luciferase, Methods Enzymol., 1978, 57, 3–15.
Y. Ando, K. Niwa, N. Yamada, T. Enomoto, T. Irie, H. Kubota, Y. Ohmiya, H. Akiyama, Firefly bioluminescence quantum yield and colour change by pH-sensitive green emission, Nat. Photonics, 2007, 2, 44–47.
H. Seliger, W. McElroy, Spectral emission and quantum yield of firefly bioluminescence, Proc. Natl. Acad. Sci. U. S. A., 1960, 88, 136–141.
B. S. Alipour, S. Hosseinkhani, S. K. Ardestani, A. Moradi, The effective role of positive charge saturation in bioluminescence color and thermostability of firefly luciferase, Photochem. Photobiol. Sci., 2009, 8, 847–855.
B. R. Branchini, D. M. Ablamsky, M. H. Murtiashaw, L. Uzasci, H. Fraga, T. L. Southworth, Thermostable red and green light-producing firefly luciferase mutants for bioluminescent reporter applications, Anal. Biochem., 2007, 361, 253–262.
G. H. E. Law, O. A. Gandelman, L. C. Tisi, C. R. Lowe, J. A. H. Murray, Mutagenesis of solvent-exposed amino acids in Photinus pyralis luciferase improves thermostability and pH-tolerance, Biochem. J., 2006, 397, 305–312.
A. Riahi-Madvar, S. Hosseinkhani, Design and characterization of novel trypsin-resistant firefly luciferases by site-directed mutagenesis, Protein Eng., Des. Sel., 2009, 22, 655–663.
L. Tisi, P. White, D. Squirrell, M. Murphy, C. Lowe, J. Murray, Development of a thermostable firefly luciferase, Anal. Chim. Acta, 2002, 457, 115–123.
P. J. White, D. J. Squirrell, P. Arnaud, C. R. Lowe, J. Murray, Improved thermostability of the North American firefly luciferase: saturation mutagenesis at position 354, Biochem. J., 1996, 319, 343–350.
K. Hirokawa, N. Kajiyama, S. Murakami, Improved practical usefulness of firefly luciferase by gene chimerization and random mutagenesis, Biochim. Biophys. Acta, Protein Struct. Mol. Enzymol., 2002, 1597, 271–279.
A. Roda, Bioluminescence and Chemiluminescence: Perspectives for the 21st Century: Proceedings of the 10th International Symposium on Bioluminescence and Chemiluminescence Held at Bologna, Italy, September, 1998, John Wiley, 1999.
M. Imani, S. Hosseinkhani, S. Ahmadian, M. Nazari, Design and introduction of a disulfide bridge in firefly luciferase: increase of thermostability and decrease of pH sensitivity, Photochem. Photobiol. Sci., 2010, 9, 1167–1177.
M. Nazari, S. Hosseinkhani, Design of disulfide bridge as an alternative mechanism for color shift in firefly luciferase and development of secreted luciferase, Photochem. Photobiol. Sci., 2011, 10, 1203–1215.
C. N. Pace, D. V. Laurents, J. A. Thomson, pH Dependence of the urea and guanidine hydrochloride denaturation of ribonuclease A and ribonuclease T1, Biochemistry, 1990, 29, 2564–2572.
C. Pace, J. Hermans, The stability of globular protein, Crit. Rev. Biochem. Mol. Biol., 1975, 3, 1–43.
P. L. Privalov, S. J. Gill, Stability of protein structure and hydrophobic interaction, Adv. Protein Chem., 1988, 39, 191.
W. M. Jackson, J. F. Brandts, Thermodynamics of protein denaturation. Calorimetric study of the reversible denaturation of chymotrypsinogen and conclusions regarding the accuracy of the two-state approximation, Biochemistry, 1970, 9, 2294–2301.
P. Privalov, N. Khechinashvili, A thermodynamic approach to the problem of stabilization of globular protein structure: a calorimetric study, J. Mol. Biol., 1974, 86, 665–684.
P. L. Privalov, S. A. Potekhin, Scanning microcalorimetry in studying temperature-induced changes in proteins, Methods Enzymol., 1986, 131, 4–51.
R. F. Greene, C. N. Pace, Urea and guanidine hydrochloride denaturation of ribonuclease, lysozyme, α-chymotrypsin, and β-lactoglobulin, J. Biol. Chem., 1974, 249, 5388–5393.
C. Pace, Determination and analysis of urea and guanidine hydrochloride denaturation curves, Methods Enzymol., 1986, 131, 266–280.
M. M. Santoro, D. Bolen, Unfolding free energy changes determined by the linear extrapolation method. 1. Unfolding of phenylmethanesulfonyl. alpha.-chymotrypsin using different denaturants, Biochemistry, 1988, 27, 8063–8068.
M. M. Santoro, D. Bolen, A test of the linear extrapolation of unfolding free energy changes over an extended denaturant concentration range, Biochemistry, 1992, 31, 4901–4907.
B. W. Matthews, Studies on protein stability with T4 lysozyme, Adv. Protein. Chem., 1995, 46, 249–278.
D. Shortle, Probing the determinants of protein folding and stability with amino acid substitutions, J. Biol. Chem., 1989, 264, 5315–5318.
S. Hosseinkhani, Molecular enigma of multicolor bioluminescence of firefly luciferase, Cell. Mol. Life Sci., 2011, 68, 1167–1182.
K. Khalifeh, B. S. Alipour, The effect of surface charge balance on thermodynamic stability and kinetics of refolding of firefly luciferase, BMB Rep., 2011, 44, 102–106.
N. Tafreshi, M. Sadeghizadeh, R. Emamzadeh, B. Ranjbar, H. Naderi-Manesh, S. Hosseinkhani, Site-directed mutagenesis of firefly luciferase: implication of conserved residue (s) in bioluminescence emission spectra among firefly luciferases, Biochem. J., 2008, 412, 27–33.
P. Maghami, B. Ranjbar, S. Hosseinkhani, A. Ghasemi, A. Moradi, P. Gill, Relationship between stability and bioluminescence color of firefly luciferase, Photochem. Photobiol. Sci., 2010, 9, 376–383.
A. Moradi, S. Hosseinkhani, H. Naderi-Manesh, M. Sadeghizadeh, B. S. Alipour, Effect of charge distribution in a flexible loop on the bioluminescence color of firefly luciferases, Biochemistry, 2009, 48, 575–582.
M. Mortazavi, S. Hosseinkhani, Design of thermostable luciferases through arginine saturation in solvent-exposed loops, Protein Eng., Des. Sel., 2011, 24, 893–903.
C. A. Royer, Approaches to teaching fluorescence spectroscopy, Biophys. J., 1995, 68, 1191.
G. Semisotnov, N. Rodionova, O. Razgulyaev, V. Uversky, A. Gripas, R. Gilmanshin, Study of the “molten globule” intermediate state in protein folding by a hydrophobic fluorescent probe, Biopolymers, 1991, 31, 119–128.
C. N. Pace, J. M. Scholtz, Measuring the conformational stability of a protein, Protein Struct.: A Practical Approach, 1997, 2, 299–321.
N. Fernandez-Fuentes, C. J. Madrid-Aliste, B. K. Rai, J. E. Fajardo, A. Fiser, M4T: a comparative protein structure modeling server, Nucleic Acids Res., 2007, 35, W363–W368.
D. Rykunov, E. Steinberger, C. J. Madrid-Aliste, A. Fiser, Improved scoring function for comparative modeling using the M4T method, J. Struct. Funct. Genomics, 2009, 10, 95–99.
K. Tina, R. Bhadra, N. Srinivasan, PIC: protein interactions calculator, Nucleic Acids Res., 2007, 35, W473–W476.
G. L. Ellman, Tissue sulfhydryl groups, Arch. Biochem. Biophys., 1959, 82, 70–77.
H. Fraga, Firefly luminescence: a historical perspective and recent developments, Photochem. Photobiol. Sci., 2008, 7, 146–158.
V. R. Viviani, A. J. Silva Neto, F. G. C. Arnoldi, J. A. R. G. Barbosa, Y. Ohmiya, The influence of the loop between residues 223–235 in beetle luciferase bioluminescence spectra: a solvent gate for the active site of pH-sensitive luciferases, Photochem. Photobiol., 2008, 84, 138–144.
M. Matsumura, B. W. Matthews, Stabilization of functional proteins by introduction of multiple disulfide bonds, Methods Enzymol., 1991, 202, 336–356.
M. Matsumura, W. J. Becktel, M. Levitt, B. W. Matthews, Stabilization of phage T4 lysozyme by engineered disulfide bonds, Proc. Natl. Acad. Sci. U. S. A., 1989, 86, 6562–5666.
J. M. Mason, M. J. Cliff, R. B. Sessions, A. R. Clarke, Low energy pathways and non-native interactions, J. Biol. Chem., 2005, 280, 40494–40499.
S. F. Betz, Disulfide bonds and the stability of globular proteins, Protein Sci., 1993, 2, 1551–1558.
R. A. Deshpande, M. I. Khan, V. Shankar, Equilibrium unfolding of RNase Rs from Rhizopus stolonifer: pH dependence of chemical and thermal denaturation, Biochim. Biophys. Acta, Proteins Proteomics, 2003, 1648, 184–194.
Z. A. Bayat, S. Hosseinkhani, R. Jafari, K. Khajeh, Relationship between stability and flexibility in the most flexible region of Photinus pyralis luciferase, Biochim. Biophys. Acta, Proteins Proteomics, 2011, 1824, 350–358.
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Nazari, M., Hosseinkhani, S. & Hassani, L. Step-wise addition of disulfide bridge in firefly luciferase controls color shift through a flexible loop: a thermodynamic perspective. Photochem Photobiol Sci 12, 298–308 (2013). https://doi.org/10.1039/c2pp25140j
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DOI: https://doi.org/10.1039/c2pp25140j