Journal of Biological Chemistry
Volume 277, Issue 42, 18 October 2002, Pages 40055-40065
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ENZYME CATALYSIS AND REGULATION
Aspartate 313 in the Streptomyces plicatusHexosaminidase Plays a Critical Role in Substrate-assisted Catalysis by Orienting the 2-Acetamido Group and Stabilizing the Transition State*

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SpHex, a retaining family 20 glycosidase from Streptomyces plicatus, catalyzes the hydrolysis of N-acetyl-β-hexosaminides. Accumulating evidence suggests that the hydrolytic mechanism involves substrate-assisted catalysis wherein the 2-acetamido substituent acts as a nucleophile to form an oxazolinium ion intermediate. The role of a conserved aspartate residue (D313) in the active site ofSpHex was investigated through kinetic and structural analyses of two variant enzymes, D313A and D313N. Three-dimensional structures of the wild-type and variant enzymes in product complexes with N-acetyl-d-glucosamine revealed substantial differences. In the D313A variant the 2-acetamido group was found in two conformations of which only one is able to aid in catalysis through anchimeric assistance. The mutation D313N results in a steric clash in the active site between Asn-313 and the 2-acetamido group preventing the 2-acetamido group from providing anchimeric assistance, consistent with the large reduction in catalytic efficiency and the insensitivity of this variant to chemical rescue. By comparison, the D313A mutation results in a shift in a shift in the pH optimum and a modest decrease in activity that can be rescued by using azide as an exogenous nucleophile. These structural and kinetic data provide evidence that Asp-313 stabilizes the transition states flanking the oxazoline intermediate and also assists to correctly orient the 2-acetamido group for catalysis. Based on analogous conserved residues in the family 18 chitinases and family 56 hyaluronidases, the roles played by the Asp-313 residue is likely general for all hexosaminidases using a mechanism involving substrate-assisted catalysis.

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Published, JBC Papers in Press, August 8, 2002, DOI 10.1074/jbc.M206481200

*

This work was supported in part by the Medical Research Council of Canada; the Protein Engineering Network of Centres of Excellence of Canada, and the Natural Sciences and Engineering Research Council of Canada.The costs of publication of this article were defrayed in part by the payment of page charges. The article must therefore be hereby marked “advertisement” in accordance with 18 U.S.C. Section 1734 solely to indicate this fact.

The atomic coordinates and the structure factors (code 1M01,1M03 and 1M04) have been deposited in the Protein Data Bank, Research Collaboratory for Structural Bioinformatics, Rutgers University, New Brunswick, NJ (http://www.rcsb.org/).

§

Supported by a postdoctoral fellowship from the Killam Trust, Canada. Present address: School of Chemistry, The University of Melbourne, Parkville, Vic 3052, Australia.

These three authors contributed equally to this work.

**

Supported by studentships from the Canadian Institutes for Health Research, the Alberta Heritage Foundation for Medical Research, and the University of Alberta.

Supported by studentships from the British Columbia Science Council and the Natural Sciences and Engineering Research Council of Canada. Present address: Depts. of Chemistry and Molecular and Cell Biology, University of California, Berkeley, CA 94720.