Genetic variation in radiation-induced cell death

  1. Vivian G. Cheung1,3,4,5,6
  1. 1Howard Hughes Medical Institute, University of Pennsylvania, Philadelphia, Pennsylvania 19104, USA;
  2. 2Cell & Molecular Biology Graduate Program, University of Pennsylvania, Philadelphia, Pennsylvania 19104, USA;
  3. 3The Children's Hospital of Philadelphia, University of Pennsylvania, Philadelphia, Pennsylvania 19104, USA;
  4. 4Department of Genetics, University of Pennsylvania, Philadelphia, Pennsylvania 19104, USA;
  5. 5Department of Pediatrics, University of Pennsylvania, Philadelphia, Pennsylvania 19104, USA

    Abstract

    Radiation exposure through environmental, medical, and occupational settings is increasingly common. While radiation has harmful effects, it has utility in many applications such as radiotherapy for cancer. To increase the efficacy of radiation treatment and minimize its risks, a better understanding of the individual differences in radiosensitivity and the molecular basis of radiation response is needed. Here, we integrated human genetic and functional genomic approaches to study the response of human cells to radiation. We measured radiation-induced changes in gene expression and cell death in B cells from normal individuals. We found extensive individual variation in gene expression and cellular responses. To understand the genetic basis of this variation, we mapped the DNA sequence variants that influence expression response to radiation. We also identified radiation-responsive genes that regulate cell death; silencing of these genes by small interfering RNA led to an increase in radiation-induced cell death in human B cells, colorectal and prostate cancer cells. Together these results uncovered DNA variants that contribute to radiosensitivity and identified genes that can be targeted to increase the sensitivity of tumors to radiation.

    Footnotes

    • 6 Corresponding author.

      E-mail vcheung{at}mail.med.upenn.edu.

    • [Supplemental material is available for this article.]

    • Article published online before print. Article, supplemental material, and publication date are at http://www.genome.org/cgi/doi/10.1101/gr.122044.111.

    • Received February 9, 2011.
    • Accepted June 28, 2011.
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