Nonequilibrium phase transitions in biomolecular signal transduction

Eric Smith, Supriya Krishnamurthy, Walter Fontana, and David Krakauer
Phys. Rev. E 84, 051917 – Published 23 November 2011

Abstract

We study a mechanism for reliable switching in biomolecular signal-transduction cascades. Steady bistable states are created by system-size cooperative effects in populations of proteins, in spite of the fact that the phosphorylation-state transitions of any molecule, by means of which the switch is implemented, are highly stochastic. The emergence of switching is a nonequilibrium phase transition in an energetically driven, dissipative system described by a master equation. We use operator and functional integral methods from reaction-diffusion theory to solve for the phase structure, noise spectrum, and escape trajectories and first-passage times of a class of minimal models of switches, showing how all critical properties for switch behavior can be computed within a unified framework.

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  • Received 20 August 2011

DOI:https://doi.org/10.1103/PhysRevE.84.051917

©2011 American Physical Society

Authors & Affiliations

Eric Smith1, Supriya Krishnamurthy1,2,3, Walter Fontana1,4, and David Krakauer1

  • 1Santa Fe Institute, 1399 Hyde Park Road, Santa Fe, New Mexico 87501, USA
  • 2Department of Physics, Stockholm University, SE-106 91 Stockholm, Sweden
  • 3School of Computer Science and Communication, KTH, SE-100 44 Stockholm, Sweden
  • 4Department of Systems Biology, Harvard Medical School, 200 Longwood Avenue, Boston, Massachusetts 02115, USA

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Issue

Vol. 84, Iss. 5 — November 2011

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