Shape of adsorbed supercoiled plasmids: An equilibrium description

Nam-Kyung Lee, Tatiana Schmatko, P. Muller, M. Maaloum, and A. Johner
Phys. Rev. E 85, 051804 – Published 22 May 2012

Abstract

Inspired by recent atomic force microscope (AFM) images of plasmids deposited on oppositely charged supported lipid bilayers from salt free solution, we propose a model for strongly adsorbed supercoiled cyclic stiff polyelectrolytes. We discuss how the excess linking number Lk of the deposited cycle is shared between writhe Wr and twist Tw at equilibrium and obtain the typical number of self-crossings in the deposited cycle as a function of surface charge density. The number of crossings at equilibrium is simply determined by the crossing penalty which is a local quantity and by the excess linking number. The number of crossings is well defined despite versatile plasmid shapes. For moderate numbers of crossings the loops are rather small and localized along the primary cycle, as expected from entropic loops. In the regime of many crossings, the cycle takes the shape of a regular flat ply ruled by local stiffness. The model allows for a semiquantitative comparison with the AFM images of deposited plasmids which are strongly charged.

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  • Received 9 November 2011

DOI:https://doi.org/10.1103/PhysRevE.85.051804

©2012 American Physical Society

Authors & Affiliations

Nam-Kyung Lee1, Tatiana Schmatko2, P. Muller2, M. Maaloum2, and A. Johner2

  • 1Institute of Fundamental Physics, Department of Physics, Sejong University, Seoul 143-743, South Korea
  • 2Institut Charles Sadron, CNRS-UdS, 23 Rue du Loess, BP 84047, 67034 Strasbourg cedex 2, France

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Vol. 85, Iss. 5 — May 2012

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