Driven transport on open filaments with interfilament switching processes

Subhadip Ghosh, Ignacio Pagonabarraga, and Sudipto Muhuri
Phys. Rev. E 95, 022417 – Published 28 February 2017

Abstract

We study a two-filament driven lattice gas model with oppositely directed species of particles moving on two parallel filaments with filament-switching processes and particle inflow and outflow at filament ends. The filament-switching process is correlated with the occupation number of the adjacent site such that particles switch filaments with finite probability only when oppositely directed particles meet on the same filament. This model mimics some of the coarse-grained features observed in context of microtubule-(MT) based intracellular transport, wherein cellular cargo loaded and off-loaded at filament ends are transported on multiple parallel MT filaments and can switch between the parallel microtubule filaments. We focus on a regime where the filaments are weakly coupled, such that filament-switching rate of particles scale inversely as the length of the filament. We find that the interplay of (off-) loading processes at the boundaries and the filament-switching process of particles leads to some distinctive features of the system. These features includes occurrence of a variety of phases in the system with inhomogeneous density profiles including localized density shocks, density difference across the filaments, and bidirectional current flows in the system. We analyze the system by developing a mean field (MF) theory and comparing the results obtained from the MF theory with the Monte Carlo (MC) simulations of the dynamics of the system. We find that the steady-state density and current profiles of particles and the phase diagram obtained within the MF picture matches quite well with MC simulation results. These findings maybe useful for studying multifilament intracellular transport.

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  • Received 10 July 2015
  • Revised 13 December 2016

DOI:https://doi.org/10.1103/PhysRevE.95.022417

©2017 American Physical Society

Physics Subject Headings (PhySH)

  1. Physical Systems
Physics of Living Systems

Authors & Affiliations

Subhadip Ghosh1,2, Ignacio Pagonabarraga3,4, and Sudipto Muhuri1,5

  • 1Institute of Physics, Sachivalaya Marg, Bhubaneswar 751005, India
  • 2Homi Bhabha National Institute, Training School Complex, Anushakti Nagar, Mumbai 400085, India
  • 3Departament de Fisica de la Matèria Condensada, Universitat de Barcelona, C. Marti i Franques 1, 08028 Barcelona, Spain
  • 4UBICS, Universitat de Barcelona Institute of Complex Systems, Universitat de Barcelona, Barcelona, Spain
  • 5Department of Physics, Savitribai Phule Pune University, Ganeshkhind, Pune 411007, India

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Issue

Vol. 95, Iss. 2 — February 2017

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