• Open Access

Housekeeping and excess entropy production for general nonlinear dynamics

Kohei Yoshimura, Artemy Kolchinsky, Andreas Dechant, and Sosuke Ito
Phys. Rev. Research 5, 013017 – Published 17 January 2023

Abstract

We propose a housekeeping/excess decomposition of entropy production for general nonlinear dynamics in a discrete space, including chemical reaction networks and discrete stochastic systems. We exploit the geometric structure of thermodynamic forces to define the decomposition; this does not rely on the notion of a steady state, and it even applies to systems that exhibit multistability, limit cycles, and chaos. In the decomposition, distinct aspects of the dynamics contribute separately to entropy production: the housekeeping part stems from a cyclic mode that arises from external driving, generalizing Schnakenberg's cyclic decomposition to nonsteady states, while the excess part stems from an instantaneous relaxation mode that arises from conservative forces. Our decomposition refines previously known thermodynamic uncertainty relations and speed limits. In particular, it not only improves an optimal-transport-theoretic speed limit, but it also extends the optimal transport theory of discrete systems to nonlinear and nonconservative settings.

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  • Received 3 June 2022
  • Revised 29 June 2022
  • Accepted 21 December 2022

DOI:https://doi.org/10.1103/PhysRevResearch.5.013017

Published by the American Physical Society under the terms of the Creative Commons Attribution 4.0 International license. Further distribution of this work must maintain attribution to the author(s) and the published article's title, journal citation, and DOI.

Published by the American Physical Society

Physics Subject Headings (PhySH)

Statistical Physics & Thermodynamics

Authors & Affiliations

Kohei Yoshimura1,*, Artemy Kolchinsky2,†, Andreas Dechant3,†, and Sosuke Ito1,2

  • 1Department of Physics, The University of Tokyo, 7-3-1 Hongo, Bunkyo-ku, Tokyo 113-0033, Japan
  • 2Universal Biology Institute, The University of Tokyo, 7-3-1 Hongo, Bunkyo-ku, Tokyo 113-0033, Japan
  • 3Department of Physics No. 1, Graduate School of Science, Kyoto University, Kyoto 606-8502, Japan

  • *kyoshimura@ubi.s.u-tokyo.ac.jp
  • These authors contributed equally to this work.

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Vol. 5, Iss. 1 — January - March 2023

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