Genome Informatics
Online ISSN : 2185-842X
Print ISSN : 0919-9454
ISSN-L : 0919-9454
Hunting TPR Domains Using Kleisli
Kui LinAnthony E. TingJiren WangLimsoon Wong
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JOURNAL FREE ACCESS

1998 Volume 9 Pages 173-182

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Abstract

We have two objectives. First, we want to build a system for detecting tetratricopeptide repeats in protein sequences. Second, we want to demonstrate how the general bioinformatics database integration system called Kleisli can help build such a system easily. We achieve these two objectives by showing that short and clear programs can be written in Kleisli, using its high-level query language CPL, to build a TPR domain hunter by integrating WU-BLAST2.0, HMMER, Entrez, and PFAM.

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© Japanese Society for Bioinformatics
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