Abstract
The white-edged rockfish Sebastes taczanowskii Steindachner, 1880 is a marine viviparous teleost, which plays a substantial role in the functioning of subtidal fish communities and is an important recreational fishery species [2]. The biology of S. taczanowskii has been well studied; however, there is no information about the population structure of the species. The aim of our study was to evaluate the available data on microsatellite loci from closely related species of the genus Sebastes, assess the intra-species polymorphism, and select the most informative loci for further analysis. We screened 19 microsatellite loci, of which only 5 could be used to analyze the genetic variability in S. taczanowskii.
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REFERENCES
Kolpakov, N.V., On the biology of rockfishes Sebastes minor and S. taczanowskii (Sebastidae) from the coastal waters of northern Primorye, J. Ichthyol., 2006, vol. 46, no. 4, pp. 311–321.
Markevich, A.I. and Gnyubkina, V.P., Features of late embryonic development and prelarvae of the rockfishes Sebastes taczanowskii and S. minor (Sebastidae) in Peter the Great Bay, Japan Sea, Izv. Tikhookean. Nauchno-Issled. Inst. Rybn. Khoz. Okeanogr., 2015, vol. 183, pp. 112–119.
An, H.S., Park, J.Y., Kim, M.-J., et al., Isolation and characterization of microsatellite markers for the heavily exploited rockfish Sebastes schlegeli, and cross-species amplification in four related Sebastes spp., Conserv. Genet., 2009, vol. 10, no. 6, pp. 1969–1972. https://doi.org/10.1007/s10592-009-9870-8
Asahida, T., Gray, A.K., and Gharrett, A.J., Use of microsatellite locus flanking regions for phylogenetic analysis? A preliminary study of Sebastes subgenera, Environ. Biol. Fishes, 2004, vol. 69, pp. 461–470.
Asahida, T., Kobayashi, T., Saitoh, K., and Nakayama, I., Tissue preservation and total DNA extraction form fish stored at ambient temperature using buffers containing high concentration of urea, Fish. Sci., 1996, vol. 62, no. 5, pp. 727–730. https://doi.org/10.2331/fishsci.62.727
Bai, C.C., Liu, S.F., Zhuang, Z.M., et al., Isolation and characterization of microsatellite markers for the Korean rockfish, Sebastes schlegeli, Genet. Mol. Res., 2011, vol. 10, no. 3, pp. 2065–2068. https://doi.org/10.4238/vol10-3gmr1522
Haldorson, L. and Love, M., Maturity and fecundity in the rockfishes, Sebastes spp., Mar. Fish. Rev., 1991, vol. 53, no. 2, pp. 25–31.
Hayakawa, Y. and Munehara, H., Comparison of ovarian functions for keeping embryos by measurement of dissolved oxygen concentrations in ovaries of copulatory and non-copulatory oviparous fishes and viviparous fishes, J. Exp. Mar. Biol. Ecol., 2003, vol. 295, no. 2, pp. 245–255. https://doi.org/10.1016/S0022-0981(03)00297-1
Hayden, M.J. and Sharp, P.J., Sequence-tagged microsatellite profiling (STMP): A rapid technique for developing SSR markers, Nucleic Acids Res., 2001, vol. 29, no. 8, artic. ID e43. https://doi.org/10.1093/nar/29.8.e43.
Hyde, J.R. and Vetter, R.D., The origin, evolution, and diversification of rockfishes of the genus Sebastes (Cuvier), Mol. Phylogenet. Evol., 2007, vol. 44, no. 2, pp. 790–811. https://doi.org/10.1016/j.ympev.2006.12.026
Kartavtsev, Y.P., Sharina, S.N., Goto, T., et al., Sequence diversity at cytochrome oxidase 1 (Co-1) gene among sculpins (Scorpaeniformes, Cottidae) and some other scorpionfish of Russia Far East with phylogenetic and taxonomic insights, Genes Genomics, 2009, vol. 31, no. 2, pp. 183–197.
Morin, P.A., Leduc, R.G., Archer, F.I., et al., Significant deviations from Hardy–Weinberg equilibrium caused by low levels of microsatellite genotyping errors, Mol. Ecol. Resour., 2009, vol. 9, no. 2, pp. 498–504. https://doi.org/10.1111/j.1755-0998.2008.02502.x
Nagasawa, T., Ishida, R., and Sasaki, M., Development of Sebastes taczanowskii (Scorpaenidae) in the Sea of Japan off Hokkaido with a key to species of larvae, Ichthyol. Res., 2008, vol. 55, no. 2, pp. 124–132.
Petit, R.J., Deguilloux, M.F., Chat, J., et al., Standardizing for microsatellite length in comparisons of genetic diversity, Mol. Ecol., 2005, vol. 14, pp. 885–890.
Rice, W.R., Analyzing tables of statistical tests, Evolution, 1989, vol. 43, no. 1, pp. 223–225.
Rousset, F., Genepop'007: A complete re-implementation of the genepop software for Windows and Linux, Mol. Ecol. Resour., 2008, vol. 8, no. 1, pp. 103–106. https://doi.org/10.1111/j.1471-8286.2007.01931.x
Selkoe, K.A. and Toonen, R.J., Microsatellites for ecologists: A practical guide to using and evaluating microsatellite markers, Ecol. Lett., 2006, vol. 9, no. 5, pp. 615–629. https://doi.org/10.1111/j.1461-0248.2006.00889.x
Takahashi, H., Takano, K., and Takemura, A., Reproductive cycles of Sebastes taczanowskii, compared with those of other rockfishes of the genus Sebastes, Environ. Biol. Fishes, 1991, vol. 30, nos. 1–2, pp. 23–30.
Van Oosterhout, C., Hutchinson, W.F., Wills, D.P.M., and Shipley, P., MICRO-CHECKER: Software for identifying and correcting genotyping errors in microsatellite data, Mol. Ecol. Notes, 2004, vol. 4, no. 3, pp. 535–538. https://doi.org/10.1111/j.1471-8286.2004.00684.x
Westerman, M.E., Buonaccorsi, V.P., Stannard, J.A., et al., Cloning and characterization of novel microsatellite DNA markers for the grass rockfish, Sebastes rastrelliger, and cross-species amplification in 10 related Sebastes spp., Mol. Ecol. Notes, 2005, vol. 5, no. 1, pp. 74–76. https://doi.org/10.1111/j.1471-8286.2004.00837.x
Wigginton, J.E., Cutler, D.J., and Abecasis, G.R., A note on exact tests of Hardy-Weinberg equilibrium, Am. J. Hum. Genet., 2005, vol. 76, no. 5, pp. 887–893. https://doi.org/10.1086/429864
Wimberger, P., Burr, J., Gray, A., et al., Isolation and characterization of twelve microsatellite loci for rockfish (Sebastes), Mar. Biotechnol., 1999, vol. 1, no. 3, pp. 311–315.
Yoshida, K., Nakagawa, M., and Wada, S., Multiplex PCR system applied for analysing microsatellite loci of Schlegel’s black rockfish, Sebastes schlegeli, Mol. Ecol. Notes, 2005, vol. 5, no. 2, pp. 416–418. https://doi.org/10.1111/j.1471-8286.2005.00945.x
ACKNOWLEDGMENTS
The authors are grateful to T.F. Priyma, V.D. Yagodina, and E.I. Bondar (Zhirmunsky National Scientific Center of Marine Biology, Far Eastern Branch, Russian Academy of Sciences), A. Tatarenkov (University of California, Irvine) for their help in this study.
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Batishcheva, N.M., Brykov, V.A. The Search of Polymorphic Microsatellite Loci for Sebastes taczanowskii Steindachner, 1880 (Sebastidae). Russ J Mar Biol 47, 322–324 (2021). https://doi.org/10.1134/S1063074021040027
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DOI: https://doi.org/10.1134/S1063074021040027