Skip to main content

Absolute Quantitation of 2-D Protein Spots

  • Protocol
2-D Proteome Analysis Protocols

Part of the book series: Methods in Molecular Biology ((MIMB,volume 112))

Abstract

Proteome analysis has been revolutionized by the marriage of two-dimensional (2-D) gel electrophoresis and mass spectrometry (14). Mass spectrometry in combination with database searching permits the large-scale identification of proteins, and 2-D gel electrophoresis allows for the large-scale visualization and separation of cellular proteins. Previously, spot quantitation has been difficult, and numbers obtained were usually comparative, but not absolute (57). Mass spectrometry and 2-D gel electrophoresis in tandem can be used to quantitate protein spots. This chapter covers protocols to quantitate precisely the relative amounts of protein observed in the 2-D gels using radiolabeled total cell extracts.

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Protocol
USD 49.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD 129.00
Price excludes VAT (USA)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD 169.00
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info
Hardcover Book
USD 169.99
Price excludes VAT (USA)
  • Durable hardcover edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

References

  1. Boucherie, H., Sagliocco, F., Joubert, R., Maillet, I., Labarre, J., and Perrot, M. (1996) Two-dimensional gel protein database of Saccharomyces cerevisiae. Electrophoresis 17, 1683–1699.

    Article  PubMed  CAS  Google Scholar 

  2. Garrels, J. I., McLaughlin, C. S., Warner, J. R., Futcher, B., Latter, G. I., Kobayashi, R., et al. (1997) Proteome studies of Saccharomyces cerevisiae: identification and characterization of abundant proteins. Electrophoresis 18, 1347–1360.

    Article  PubMed  CAS  Google Scholar 

  3. Link, A. J., Hays, L. G., Carmack, E. B., and Yates, J. R., III (1997) Identifying the major proteome components of Haemophilus influenzae type-strain NCTC 8143. Electrophoresis 18, 1314–1334.

    Article  PubMed  CAS  Google Scholar 

  4. Shevchenko, A., Jensen, O. N., Podtelejnikov, A. V., Sagliocco, F., Wilm, M., Vorm, O., et al. (1996) Linking genome and proteome by mass spectrometry: large-scale identification of yeast proteins from two dimensional gels. Proc. Natl. Acad. Sci. USA 93, 14,440–14,445.

    Article  PubMed  CAS  Google Scholar 

  5. Lustig, R. H., Pfaff, D. W., and Mobbs, C. V. (1989) Two-dimensional gel autora-diographic analysis of the acute effects of estradiol on protein synthesis in the female rat ventromedial nucleus in vivo. Endocrinology 124, 1863–1869.

    Article  PubMed  CAS  Google Scholar 

  6. Burggraf, D. and Lottspeich, F. (1995) The further construction of the two-dimensional database of common human proteins. Electrophoresis 16, 831–840.

    Article  PubMed  CAS  Google Scholar 

  7. Anderson, L. and Seilhamer, J. (1997) A comparison of selected mRNA and protein abundances in human liver. Electrophoresis 18, 533–537.

    Article  PubMed  CAS  Google Scholar 

  8. Ben-Bassat, A. Bauer, K., Chang, S.-Y., Myambo, K., Boosman, A., and Chang, S. (1987) Processing of the initiation methionine from proteins: properties of the Escherichia coli methionine aminopeptidase and its gene structure. J. Bacteriol. 169, 751–757.

    PubMed  CAS  Google Scholar 

  9. Hirel, P.-H., Schmitter, J.-M., Dessen, P., Fayat, G., and Blanquet, S. (1989) Extent of N-terminal methionine excision from Escherichia coli proteins is governed by the side-chain length of the penultimate amino acid. Proc. Natl. Acad. Sci. USA 86, 8247–8251.

    Article  PubMed  CAS  Google Scholar 

  10. Tsunasawa, S., Stewart, J. W., and Sherman, F. (1985) Amino-terminal processing of mutant forms of yeast iso-1-cytochrome c. The specificities of methionine aminopeptidase and acetyltransferase. J. Biol Chem. 260, 5382–5391.

    PubMed  CAS  Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 1999 Humana Press Inc., Totowa, NJ

About this protocol

Cite this protocol

Gygi, S.P., Aebersold, R. (1999). Absolute Quantitation of 2-D Protein Spots. In: Link, A.J. (eds) 2-D Proteome Analysis Protocols. Methods in Molecular Biology, vol 112. Humana Press. https://doi.org/10.1385/1-59259-584-7:417

Download citation

  • DOI: https://doi.org/10.1385/1-59259-584-7:417

  • Publisher Name: Humana Press

  • Print ISBN: 978-0-89603-524-9

  • Online ISBN: 978-1-59259-584-6

  • eBook Packages: Springer Protocols

Publish with us

Policies and ethics