Skip to content
Licensed Unlicensed Requires Authentication Published by De Gruyter September 22, 2005

Genotyping of the 19-bp insertion/deletion polymorphism in the 5′ flank of β-hydroxylase gene by dissociation analysis of allele-specific PCR products

  • Henrik Berg Rasmussen and Thomas Werge

Abstract

The 19-bp insertion/deletion polymorphism in the 5′ flank of the dopamine β-hydroxylase ( DBH) gene has been associated with psychiatric disorders. We have developed a simple, reliable and inexpensive closed-tube assay for genotyping of this polymorphism based upon T m determination of amplified DNA fragments. Mistyping of heterozygote samples due to preferential allele amplification was prevented by use of an optimized concentration of Mg 2+, addition of dimethyl sulfoxide and annealing/extension at an appropriate temperature. Comparison of results achieved by the closed-tube assay and a conventional approach based upon agarose gel electrophoresis of amplified fragments revealed complete concordance between the two procedures. The insights obtained in this study may be utilized to develop assays based upon dissociation analysis of PCR products for genotyping of other insertion/deletion polymorphisms.


Corresponding author: Henrik Berg Rasmussen, Research Institute of Biological Psychiatry, 2 Boserupvej, H:S Sct. Hans Hospital, 4000 Roskilde, Denmark Phone: +45-46334971, Fax: +45-46334367,

References

1. Weinshilboum RM. Serum dopamine β-hydroxylase. Pharmacol Rev 1979; 30: 132–66. Search in Google Scholar

2. Cubells JF, Zabetian CP. Human genetics of plasma dopamine beta-hydroxylase activity: applications to researchin psychiatry and neurology. Psychopharmacology 2004; 174: 463–76. Search in Google Scholar

3. Cubells JF, Kranzler HR, McCance-Katz E, Anderson GM, Malison RT, Price LH, et al. A haplotype at the DBH locus, associated with low plasma dopamine beta-hydroxylase activity, also associates with cocaine-induced paranoia. Mol Psychiatry 2000; 5: 56–63. 10.1038/sj.mp.4000657Search in Google Scholar

4. Zabetian CP, Anderson GM, Buxbaum SG, Elston RC, Ichinose H, Nagatsu T, et al. A quantitative-trait analysis of human plasma-dopamine beta-hydroxylase activity: evidence for a major functional polymorphism at the DBH locus. Am J Hum Genet 2001; 68: 515–22. 10.1086/318198Search in Google Scholar

5. Yamamoto K, Cubells JF, Gelernter J, Benkelfat C, Lalonde P, Bloom D, et al. Dopamine beta-hydroxylase (DBH) gene and schizophrenia phenotypic variability: A genetic association study. Am J Med Genet 2003; 117B: 33–8. 10.1002/ajmg.b.10011Search in Google Scholar

6. Robinson PD, Schutz CK, Macciardi F, White BN, Holden JJ. Genetically determined low maternal serum dopamine beta-hydroxylase levels and the etiology of autism spectrum disorders. Am J Med Genet 2001; 100: 30–6. 10.1002/ajmg.1187Search in Google Scholar

7. Anderson EA, Sinkey CA, Lawton WJ, Mark AL. Elevated sympathetic nerve activity in borderline hypertensive humans: evidence from direct intraneural recordings. Hypertension 1989; 14: 177–83. 10.1161/01.HYP.14.2.177Search in Google Scholar

8. Ueda S, Heeley RP, Lees KR, Elliott HL, Connell JM. Mistyping of the human angiotensin-converting enzyme gene polymorphism: frequency, causes and possible methods to avoid errors in typing. J Mol Endocrinol 1996; 17: 27–30. 10.1677/jme.0.0170027Search in Google Scholar

9. Odawara M, Matsunuma A, Yamashita K. Mistyping frequency of the angiotensin-converting enzyme gene polymorphism and an improved method for its avoidance. Hum Genet 1997; 100: 163–6. 10.1007/s004390050484Search in Google Scholar

10. Kaiser R, Tremblay PB, Roots I, Brockmoller J. Validity of PCR with emphasis on variable number of tandem repeat analysis. Clin Biochem 2002; 35: 49–56. 10.1016/S0009-9120(02)00273-4Search in Google Scholar

11. Walsh PS, Erlich HA, Higuchi R. Preferential PCR amplification of alleles: mechanisms and solutions. PCR Methods Appl 1992; 1: 241–50. 10.1101/gr.1.4.241Search in Google Scholar PubMed

12. Rozen S, Skaletsky HJ. Primer3 on the WWW for general users and for biologist programmers. In: Krawetz S, Misener S, editors. Bioinformatics methods and protocols: methods in molecular biology. Totowa, NJ: Humana Press, 2000:365–86. Search in Google Scholar

13. Bolton ET, McCarthy BJ. A general method for the isolation of RNA complementary to DNA. Proc Natl Acad Sci USA 1962; 48: 1390–7. 10.1073/pnas.48.8.1390Search in Google Scholar PubMed PubMed Central

14. Ye J, Parra EJ, Sosnoski DM, Hiester K, Underhill PA, Shriver MD. Melting curve SNP (McSNP) genotyping: a useful approach for diallelic genotyping in forensic science. J Forensic Sci 2002; 47: 593–600. 10.1520/JFS2001183Search in Google Scholar

Received: 2005-4-14
Accepted: 2005-7-19
Published Online: 2005-9-22
Published in Print: 2005-9-1

©2005 by Walter de Gruyter Berlin New York

Downloaded on 22.5.2024 from https://www.degruyter.com/document/doi/10.1515/CCLM.2005.154/html
Scroll to top button