Skip to content
BY-NC-ND 3.0 license Open Access Published by De Gruyter (O) February 26, 2016

Crystal structure of (2-(2-chlorophenyl)-5-ethyl-1,3-dioxan-5-yl)methanol hemihydrate, C13H17ClO3 · 0.5 H2O

  • Lin Yuan EMAIL logo , Xing-Yu Zhang and Xian-You Yuan

Abstract

C26H36Cl2O7, orthorhombic, Pccn, a = 14.2010(8) Å, b = 24.4565(15) Å, c = 7.8551(5) Å, V = 2728.1(3) Å3, Z = 4, Rgt(F) = 0.0434, wRref(F2) = 0.1291, T = 296(2) K.

CCDC no.:: 992379

The crystal structure is shown in the figure, Tables 13 contain details of the measurement method and a list of the atoms including atomic coordinates and displacement parameters.

Table 1

Data collection and handling.

Crystal:Colorless, block, size 0.18×0.38×0.45 mm
Wavelength:Mo Kα radiation (0.71073 Å)
μ:2.79 cm−1
Diffractometer, scan mode:CCD area detector, φ and ω scans
2θmax:54.96°
N(hkl)measured, N(hkl)unique:28223, 3119
Criterion for Iobs, N(hkl)gt:Iobs > 2 σ(Iobs), 2485
N(param)refined:167
Programs:SHELX [13]
Table 2

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2).

AtomSitexyzUiso
H(3)8e0.81880.70700.55080.096
H(7)8e1.00230.57340.93040.046
H(8A)8e0.81220.63380.75120.048
H(8B)8e0.85550.57700.80110.048
H(9A)8e1.00930.54700.64350.056
H(9B)8e1.05080.58760.50850.056
H(11A)8e0.85800.53560.52650.058
H(11B)8e0.79260.58480.47980.058
H(4)8e1.11150.75431.22130.072
H(13A)8e0.96020.69010.58800.060
H(13B)8e0.96500.66400.40600.060
H(5)8e1.01910.71351.01760.058
H(3A)8e1.22070.70321.37050.077
H(2)8e1.24200.61181.30660.070
H(12A)8e0.87950.60150.23600.099
H(12B)8e0.84680.54030.23550.099
H(12C)8e0.95060.55510.28490.099
H(1WA)8e0.718(4)0.764(2)0.303(4)0.067
H(1WB)8e0.787(3)0.725(2)0.263(4)0.067
Table 3

Atomic displacement parameters (Å2).

AtomSitexyzU11U22U33U12U13U23
Cl(1)8e1.16020(4)0.53938(2)1.07988(8)0.0785(4)0.0488(3)0.0904(4)0.0157(2)−0.0235(3)0.0054(2)
O(2)8e0.92981(7)0.63994(5)0.8845(1)0.0356(6)0.0497(7)0.0375(6)0.0046(5)−0.0002(4)−0.0024(5)
O(1)8e1.06598(8)0.61321(5)0.7461(1)0.0323(6)0.0658(8)0.0394(6)0.0027(5)−0.0006(5)−0.0064(5)
O(3)8e0.8389(1)0.69035(6)0.4679(2)0.089(1)0.0594(8)0.0439(7)0.0269(7)−0.0078(7)0.0043(6)
C(6)8e1.0741(1)0.63775(6)1.0355(2)0.0395(8)0.0411(8)0.0344(8)−0.0020(6)−0.0003(6)0.0046(6)
C(10)8e0.9174(1)0.60975(6)0.5868(2)0.0339(7)0.0391(8)0.0352(7)−0.0012(6)−0.0012(6)0.0028(6)
C(1)8e1.1419(1)0.60841(7)1.1245(2)0.0430(9)0.0458(9)0.0457(9)−0.0016(7)−0.0030(7)0.0074(7)
C(7)8e1.0150(1)0.61154(6)0.8996(2)0.0381(8)0.0401(8)0.0360(8)0.0022(6)−0.0013(6)0.0028(6)
C(8)8e0.8706(1)0.61354(7)0.7615(2)0.0329(7)0.0476(9)0.0385(8)−0.0020(6)0.0001(6)0.0052(6)
C(9)8e1.0154(1)0.58532(8)0.6138(2)0.0407(9)0.059(1)0.0396(8)0.0079(7)−0.0023(7)−0.0091(7)
C(11)8e0.8571(1)0.57183(8)0.4761(2)0.0477(9)0.0502(9)0.0464(9)−0.0052(7)−0.0071(7)−0.0014(8)
C(4)8e1.1187(2)0.71732(8)1.1977(3)0.070(1)0.050(1)0.060(1)−0.0101(9)−0.001(1)−0.0098(9)
C(13)8e0.9273(1)0.66651(7)0.5086(2)0.059(1)0.0464(9)0.0435(9)−0.0070(8)−0.0006(8)0.0091(7)
C(5)8e1.0639(1)0.69282(7)1.0751(2)0.056(1)0.0442(9)0.0458(9)0.0015(8)−0.0028(8)0.0003(7)
C(3)8e1.1846(2)0.68680(9)1.2858(3)0.067(1)0.073(1)0.053(1)−0.025(1)−0.012(1)−0.004(1)
C(2)8e1.1971(1)0.63230(9)1.2487(3)0.049(1)0.072(1)0.054(1)−0.0077(9)−0.0150(8)0.0124(9)
C(12)8e0.8862(2)0.5667(1)0.2912(3)0.070(1)0.077(1)0.050(1)−0.001(1)−0.007(1)−0.015(1)
O(1W)4c0.750.750.2195(2)0.074(1)0.056(1)0.0385(9)0.0056(9)00

Source of material

2,2-Bis(hydroxymethyl) butanol (1.4759 g, 11 mmol), 2-chlorobenzaldehyde (1.4057 g, 10 mmol), cyclohexane (10 mL), N,N-dimethytformamide (2 mL) and p-toluene sulfonic acid (0.1003 g, 0.5825 mmol) were heated and stirred at 388 K for 3.5 hours, then sodium bicarbonate (0.05853 g, 0.6967 mmol) was added to dissolve the residue after the solvent was evaporated under reduced pressure. The solution was washed with water (20 ml), and dried with anhydrous sodium sulfate. The resulting solution was filtered and evaporated, and the product was recrystallized from cyclohexane to afford colorless crystals (yield 70.2%; m. p. 344 K).

Discussion

Most 1,3-dioxane compounds are important part of organic chemistry. It has special activity [1] and widely existed in many natural product such as carbohydrate, vitamin, hormone and so on [2]. The synthesis of 1,3-dioxane compounds was mainly applied from aldol reaction through hydroxy containing polyfunctional group with aldeyde (ketone) [3]. 2,2-Bis(hydroxymethyl) butanol, which has typical neoamyl group, is a common chemical product [47]. The neoamyl group display a good heat resistance, hydrolysis resistance, and color stability [810]. Therefore, in this paper, a novel compound (2-(2-chlorophenyl)-5-ethyl-1,3-dioxan-5-yl)methanol was synthesized by the reaction of 2,2-bis(hydroxymethyl) butanol with 2-chlorobenzaldehyde, and p-toluene sulfonic acid as catalyst, DMF and cyclohexanone as solvent. The crystal structures of some similar 1,3-dioxanes have been reported [11, 12].

In the crystal, adjacent molecules are connected by O—H⋯O (2.7622(19) Å) hydrogen bonds between the oxygen atoms O3 and O1W into a one-dimensional chain.


Corresponding author: Lin Yuan, Department of Biology and Chemistry, Hunan University of Science and Engineering, Yongzhou Hunan 425199, P. R. China, e-mail:

Acknowledgements:

This work was financially Supported by the Science and Technology Planning Project of Hunan Province (2015GK3037), the Scientific Research Fund of Hunan Provincial Education Department (14A058).

References

1. Polshettiwar, V.; Varma, R. S.: Greener and expeditious synthesis of bio-active heterocycles using microwave irradiation. Pure Appl. Chem. 80 (2008) 777—790.10.1351/pac200880040777Search in Google Scholar

2. Helguera, A. M.; Perez Machado, G.; Borges, F.: Discovery of MAO-B inhibitors present status and future directions. Part I: Oxygen heterocycles and analogues. Mini. Rev. Med. Chem., 10 (2012) 907—919.10.2174/138955712802762301Search in Google Scholar PubMed

3. Prantz, K.; Johann, M.: Synthetic applications of the carbonyl generating grob fragmentation. Chem. Rev. 110 (2010) 3741—3766.10.1021/cr900386hSearch in Google Scholar PubMed

4. Alemdar, N.; Erciyes, A. T.; Bicak, N.: Preparation of unsaturated polyesters using boric acid as mild catalyst and their sulfonated derivatives as new family of degradable polymer surfactants. J. Polymer. 51 (2010) 5044—5050.10.1016/j.polymer.2010.08.066Search in Google Scholar

5. Wang, G. W.; Yuan, X. Y.; Liu, Y. C.; Lei, X. G.; Guo, Q. X.: Synthesis and characterization of cleavable cationic surfactants with a 1,3-dioxane ring. J. Am. Oil Chem. Soc. 72 (1995) 83—87.10.1007/BF02635783Search in Google Scholar

6. Yuan, X. Y.; Yang, N. F.; Luo, H. A.; Liu, Y. J.: Microwave syntheses of disulfonate salt-type cleav-ablesurfactants with a 1,3-dioxane ring. Chin. J. Org. Chem. 25 (2005) 1049—1052.Search in Google Scholar

7. Wang, G. W.; Liu, Y. C.; Yuan, X. Y.; Lei, X. G.; Guo, Q. X.: Preparation, properties, and applications of vesicle-forming cleavable surfactants with a 1,3-dioxane ring. J. Colloid. Interface Sci. 173 (1995) 49—54.10.1006/jcis.1995.1295Search in Google Scholar

8. Arnott, G. E.: Reduction of carboxylic acids and their derivatives to aldehydes: reference module in chemistry from comprehensive organic synthesis II. Molecular Sciences and Chemical Engineering. 8 (2014) 410—455.Search in Google Scholar

9. Mike, K.; Peter, R. S.: Acid-free, organocatalytic acetalization. Tetrahedron., 62 (2006) 434—439.10.1016/j.tet.2005.09.079Search in Google Scholar

10. Putla, M. B.; Avvari, N. P.; Padigapati, S. R.; Benjaram, M. R.: Synthesis of bio-additive fuels from acetalization of glycerol with benzaldehyde over molybdenum promoted green solid acid catalysts. Fuel Processing Technology. 106 (2013) 539—545.10.1016/j.fuproc.2012.09.025Search in Google Scholar

11. Jia, G. K.; Yuan, L.; Zhang, M.; Yuan, X. Y.: 2-(2-Chlorophenyl)-5-methyl-1,3-dioxane-5-carboxylic acid. Acta Crystallogr. E68 (2012) O2037.10.1107/S1600536812025019Search in Google Scholar PubMed PubMed Central

12. Zhang, M.; Jia, G. K.; Yuan, L.; Yuan, X. Y.: Crystal structure of 2-(4-chlorophenyl)-5-methyl-1, 3-dioxane-5-carboxylic acid, C12H13ClO4. J. Zeitschrift für Kristallographie-NCS. 228 (2013) 393—394.10.1524/ncrs.2013.0197Search in Google Scholar

13. Sheldrick, G. M.: A short history of SHELX. Acta Crystallogr. A64 (2008) 112–122.10.1107/S0108767307043930Search in Google Scholar PubMed

Received: 2015-5-28
Accepted: 2015-12-17
Published Online: 2016-2-26
Published in Print: 2016-6-1

©2016 Lin Yuan et al., published by De Gruyter.

This work is licensed under the Creative Commons Attribution-NonCommercial-NoDerivatives 3.0 License.

Downloaded on 29.4.2024 from https://www.degruyter.com/document/doi/10.1515/ncrs-2015-0109/html
Scroll to top button