Skip to content
BY-NC-ND 4.0 license Open Access Published by De Gruyter (O) September 16, 2017

Crystal structure of (E)-5-(diethylamino)-2-(((1,1,2-trihydroxyethyl)iminio)methyl)phenolate, C15H24N2O4

  • Lin Yuan , Zhong-Yan Li EMAIL logo , Xian-You Yuan and Min Zhang

Abstract

C15H24N2O4, orthorhombic, Pca21, a = 18.528(6) Å, b = 8.123(2) Å, c = 20.797(6) Å, V = 3129.9(16) Å3, Z = 8, Rgt(F) = 0.0396, wRref(F2) = 0.1082, T = 296(2) K.

CCDC no.:: 1542483

The organic cation of the title crystal structure is shown in the figure. Tables 1 and 2 contain details on crystal structure and measurement conditions and a list of the atoms including atomic coordinates and displacement parameters.

Table 1

Data collection and handling.

Crystal:Block
Size:0.34 × 0.32 × 0.30 mm
Wavelength:Mo Kα radiation (0.71073 Å)
μ:0.09 mm−1
Diffractometer, scan mode:Bruker APEX-II CCD, φ & ω
θmax:25.0°
N(hkl)measured, N(hkl)unique, Rint:28099, 5520, 0.030
Criterion for Iobs, N(hkl)gt:Iobs > 2 σ(Iobs), 5009
N(param)refined:389
Programs:SAINT [6], SHELX [7] OLEX2 [8]
Table 2

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2).

AtomxyzUiso*/Ueq
C1−0.11258(11)−1.5999(3)−0.18701(11)0.0364(5)
N1−0.27117(10)−1.5313(2)−0.04469(9)0.0425(4)
O1−0.17877(8)−1.4237(2)−0.25550(8)0.0425(4)
C2−0.17327(11)−1.4951(2)−0.19980(10)0.0320(4)
H2−0.0920−1.5012−0.30100.041*
H2A0.1309−1.5852−0.26540.062*
N2−0.05562(8)−1.5602(2)−0.28971(9)0.0344(4)
O20.09973(8)−1.51574(19)−0.25843(8)0.0415(4)
C3−0.22536(11)−1.4750(3)−0.15125(11)0.0350(5)
H3−0.0126−1.9519−0.36720.073*
H3A−0.2646−1.4068−0.15930.042*
N3−0.51140(10)−1.0872(2)−0.60567(9)0.0428(4)
O3−0.02868(8)−1.86377(18)−0.35428(9)0.0487(4)
C4−0.22084(11)−1.5527(3)−0.09173(10)0.0363(5)
H4−0.3556−0.9047−0.34620.039*
H4A−0.0240−1.2911−0.39600.079*
N4−0.31754(8)−0.9635(2)−0.35184(9)0.0328(4)
O4−0.05638(9)−1.3596(2)−0.39843(10)0.0530(4)
C5−0.15992(13)−1.6587(3)−0.08054(12)0.0513(6)
H5−0.1554−1.7137−0.04150.062*
O5−0.44725(8)−0.87590(17)−0.39983(8)0.0375(3)
C6−0.10954(12)−1.6786(3)−0.12625(12)0.0487(6)
H6−0.2571−1.3263−0.27910.059*
H6A−0.0707−1.7475−0.11760.058*
O6−0.29299(7)−1.27128(17)−0.28751(8)0.0393(3)
C7−0.32987(13)−1.4129(3)−0.05086(12)0.0452(5)
H7−0.1301−0.8676−0.37240.102*
H7A−0.3138−1.3220−0.07750.054*
H7B−0.3412−1.3692−0.00860.054*
O7−0.17393(9)−0.8796(3)−0.36954(11)0.0679(6)
C8−0.39777(14)−1.4852(4)−0.07984(16)0.0619(7)
H8−0.3523−0.6946−0.23710.077*
H8A−0.3881−1.5205−0.12300.093*
H8B−0.4351−1.4032−0.08030.093*
H8C−0.4132−1.5777−0.05460.093*
O8−0.34396(9)−0.7935(2)−0.23962(9)0.0511(4)
C9−0.26939(13)−1.6224(3)0.01574(12)0.0499(6)
H9A−0.2472−1.72880.00830.060*
H9B−0.3185−1.64150.03000.060*
C10−0.2288(3)−1.5354(6)0.06820(16)0.0999(15)
H10A−0.1816−1.50570.05290.150*
H10B−0.2242−1.60700.10470.150*
H10C−0.2545−1.43780.08050.150*
C11−0.05792(11)−1.6256(3)−0.23215(11)0.0377(5)
H11−0.0201−1.6946−0.22040.045*
C120.00268(10)−1.5775(3)−0.33657(10)0.0355(5)
C130.06697(11)−1.4690(3)−0.31726(12)0.0382(5)
H13A0.1030−1.4734−0.35110.046*
H13B0.0507−1.3559−0.31380.046*
C140.02878(11)−1.7555(3)−0.34138(13)0.0414(5)
H14A0.0644−1.7641−0.37540.050*
H14B0.0517−1.7869−0.30130.050*
C15−0.02615(13)−1.5184(3)−0.40131(13)0.0462(5)
H15A0.0129−1.5184−0.43230.055*
H15B−0.0626−1.5951−0.41630.055*
C16−0.36061(11)−1.0352(3)−0.45735(10)0.0358(5)
C17−0.42964(11)−0.9559(2)−0.45191(10)0.0315(4)
C18−0.47793(11)−0.9722(3)−0.50326(10)0.0352(5)
H18−0.5218−0.9167−0.50130.042*
C19−0.46293(11)−1.0683(3)−0.55738(10)0.0370(5)
C20−0.39450(12)−1.1496(3)−0.56101(11)0.0461(6)
H20−0.3832−1.2148−0.59640.055*
C21−0.34645(12)−1.1308(3)−0.51272(11)0.0459(6)
H21−0.3020−1.1831−0.51610.055*
C22−0.57628(13)−0.9872(3)−0.60904(13)0.0488(6)
H22A−0.5881−0.9691−0.65390.059*
H22B−0.5660−0.8806−0.59010.059*
C23−0.64085(15)−1.0583(4)−0.57631(18)0.0688(8)
H23A−0.6542−1.1594−0.59700.103*
H23B−0.6802−0.9818−0.57880.103*
H23C−0.6296−1.0796−0.53200.103*
C24−0.49889(13)−1.1982(3)−0.66007(11)0.0469(5)
H24A−0.5451−1.2346−0.67680.056*
H24B−0.4731−1.2946−0.64490.056*
C25−0.4566(2)−1.1203(4)−0.71354(15)0.0698(9)
H25A−0.4463−1.2014−0.74580.105*
H25B−0.4122−1.0771−0.69680.105*
H25C−0.4843−1.0326−0.73220.105*
C26−0.30988(11)−1.0348(2)−0.40741(11)0.0362(5)
H26−0.2668−1.0906−0.41470.043*
C27−0.26658(10)−0.9752(2)−0.29812(10)0.0354(5)
C28−0.28930(12)−1.1203(3)−0.25488(11)0.0379(5)
H28A−0.2550−1.1302−0.21980.045*
H28B−0.3362−1.0964−0.23640.045*
C29−0.18939(11)−0.9996(3)−0.32215(13)0.0460(6)
H29A−0.1558−0.9891−0.28660.055*
H29B−0.1842−1.1090−0.34030.055*
C30−0.27238(12)−0.8177(3)−0.25927(12)0.0450(5)
H30A−0.2413−0.8245−0.22190.054*
H30B−0.2567−0.7251−0.28520.054*

Source of material

A mixture of Tris(hydroxymethyl)methyl aminomethane (1.21 g, 10 mmol) and 4-diethylaminosalicylaldehyde (1.93 g, 10 mmol), in anhydrous ethanol (30 mL) was heated at 373 K for about 3 h. Then the solvent was removed under reduced pressure. The resulting residue was purified by recrystallization from ethanol to obtain a crystal.

Experimental details

All hydrogen atoms were introduced by a riding model. The methyl groups were idealized and refined using rigid groups allowed to rotate about the N—C bond (AFIX 137 option of the SHELXL-2013 program) [7]. The Uiso values of the hydrogen atoms of the methyl groups were set to 1.5Ueq(C) and the Uiso values of all other hydrogen atons were set to 1.2Ueq(C).

Discussion

o-Hydroxy Schiff bases belong to an important class of organic compounds due to their crystallography and biological activity [1], [2], [3], [4], [5]. From the crystallography point of view, o-hydroxy Schiff-bases are of great interest to the investigators mostly due to the intramolecular H-bond.

The asymmetric unit of the title compound contains two molecules. One of them is shown in the figure. Their geometric parameters are very similar. They both are in the zwitterionic form in the solid state, with the H atom of the phenol group being transferred to the imine N atom. Consequently, they both adopt an E-configuration about the central C = N double bond.

In both molecules an intramolecular NH⋯O hydrogen bond is present. Adjacent molecules are connected via classical NH⋯O hydrogen bonds to form a 2D network parallel to the ab plane.

Acknowledgement

This work was financially supported by the Scientific Research Fund of Hunan Provincial Education Department (No. 16B104), Natural Science Foundation of Hunan Province of China (2017JJ3093), the Opening Project of Key Laboratory of Comprehensive Utilization of Advantage Plants Resources in Hunan South (No. XNZW16C01) and the Scientific Research Fund of Hunan University of Science and Engineering (No. 16XKY063).

References

Xu, T. T.; Xu, X. Y.; Gao, J.; Liu, L. L.; Ni, S. S.; Lu, L. D.; Yang, X. J.: Thermoelectric properties of Bi2Te3 atomic quintuple thin films. Chinese J. Struct. Chem. 25 (2006) 1502–1506.Search in Google Scholar

Hopfl, H.; Sanchea, M.; Barba, V.; Farfan, N.; Rojas, S.; Santillan, R.: Synthesis and study of monomeric and dimeric boronates by spectroscopic methods and X-ray crystallography. Inorg. Chem. 37 (1998) 1679–1681.10.1021/ic970886gSearch in Google Scholar

Fulop, F.; Sillanpaa, R.; Dahlqvist, M.; Pihlaja, K.; Vainiotalo, P.: Ring-chain tautomerism and crystal structure of some 1,3-oxazacyclanes, and the electrophilic substitutent constants for some heteroaryl groups in solution and in the gas-phase. Heterocycles 37 (1994) 1093–1095.10.3987/COM-93-S121Search in Google Scholar

Zhao, S. J.; Yuan, J.: Recognizing the importance of ADR monitoring of drugs available on the market from PPA event. China Pharm. 9 (2001) 551–552.Search in Google Scholar

Kerman, W. N.; Viscolij, C. M.; Brassj, L. M.; Broderick, J. P.; Brott, T.; Feldmanna, E.: Drug interactions in geriatric patients. Adverse Drug React. 1 (2001) 10–17.10.1007/BF03264506Search in Google Scholar

SAINT. Bruker AXS Inc., Madison, Wisconsin, USA.Search in Google Scholar

Sheldrick, G. M.: A short history of SHELX. Acta Crystallogr. A64 (2008) 112–122.10.1107/S0108767307043930Search in Google Scholar PubMed

Dolomanov, O. V.; Bourhis, L. J.; Gildea, R. J.; Howard, J. A. K.; Puschmann, H.: OLEX2: A complete structure solution, refinement and analysis program. J. Appl. Cryst. 42 (2009) 339–341.10.1107/S0021889808042726Search in Google Scholar

Received: 2017-5-10
Accepted: 2017-8-26
Published Online: 2017-9-16
Published in Print: 2017-11-27

©2017 Lin Yuan et al., published by De Gruyter, Berlin/Boston

This work is licensed under the Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 License.

Downloaded on 30.4.2024 from https://www.degruyter.com/document/doi/10.1515/ncrs-2017-0063/html
Scroll to top button