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BY 4.0 license Open Access Published by De Gruyter (O) October 12, 2020

Crystal structure of (E)-2-(3,5-bis(trifluoromethyl)benzylidene)-7-methoxy-3,4-dihydronaphthalen- 1(2H)-one, C20H14F6O2

  • Ming-Zhu Luan ORCID logo , Hui-yun Wang , Mei Zhang , Jia Song , Gui-Ge Hou ORCID logo , Feng-Lan Zhao and Qing-Guo Meng EMAIL logo

Abstract

C20H14F6O2, monoclinic, P21/c (no. 14), a = 14.791(2) Å, b = 8.5303(9) Å, c = 15.531(3) Å, β = 115.474(19)°, V = 1769.1(5) Å3, Z = 4, Rgt(F) = 0.0574, wRref(F2) = 0.1451, T = 100 K.

CCDC no.: 2016723

The molecular structure is shown in the figure. Table 1 contains crystallographic data and Table 2 contains the list of the atoms including atomic coordinates and displacement parameters.

Table 1:

Data collection and handling.

Crystal:Colourless block
Size:0.13 × 0.12 × 0.10 mm
Wavelength:Mo Kα radiation (0.71073 Å)
μ:0.14 mm−1
Diffractometer, scan mode:SuperNova, Ω
θmax, completeness:25.5°, >99%
N(hkl)measured, N(hkl)unique, Rint:8090, 3297, 0.027
Criterion for Iobs, N(hkl)gt:Iobs > 2 σ(Iobs), 2189
N(param)refined:282
Programs:CrysAlisPRO [1], SHELX [2], [3]
Table 2:

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2).

AtomxyzUiso*/Ueq
C10.47461 (19)0.1153 (3)0.1241 (2)0.0519 (7)
C20.36909 (17)0.0798 (3)0.10808 (19)0.0502 (6)
C30.28942 (19)0.1754 (4)0.0325 (2)0.0656 (8)
H3A0.2918620.2822130.0548550.079*
H3B0.2240840.1323390.0194210.079*
C40.30470 (19)0.1750 (4)−0.0585 (2)0.0683 (8)
H4A0.2947020.069663−0.0845190.082*
H4B0.2554080.242855−0.1054030.082*
C50.4261 (2)0.3093 (4)−0.1090 (2)0.0648 (8)
H50.3734000.328156−0.1682870.078*
C60.5207 (2)0.3600 (3)−0.0913 (2)0.0632 (8)
H60.5312000.413260−0.1385020.076*
C70.60023 (19)0.3324 (3)−0.0040 (2)0.0554 (7)
C80.58468 (18)0.2523 (3)0.06519 (19)0.0523 (7)
H80.6381890.2318630.1237580.063*
C90.48839 (17)0.2014 (3)0.04756 (18)0.0467 (6)
C100.40796 (18)0.2302 (3)−0.03959 (19)0.0530 (7)
C110.7751 (2)0.3566 (5)0.0911 (3)0.0959 (12)
H11A0.7655920.3997390.1437130.144*
H11B0.8335150.4023540.0892190.144*
H11C0.7836640.2451710.0987720.144*
C120.35570 (18)−0.0359 (3)0.15895 (19)0.0520 (7)
H120.413263−0.0863420.2017500.062*
C130.25978 (17)−0.0934 (3)0.15514 (18)0.0492 (6)
C140.24401 (19)−0.2546 (3)0.15445 (19)0.0536 (7)
H140.294294−0.3234540.1581820.064*
C150.1539 (2)−0.3130 (3)0.14822 (19)0.0552 (7)
C160.0797 (2)−0.2134 (3)0.14618 (19)0.0566 (7)
H160.019643−0.2532010.1426530.068*
C170.09560 (18)−0.0542 (3)0.14942 (19)0.0507 (6)
C180.18432 (18)0.0053 (3)0.15334 (19)0.0533 (7)
H180.1935780.1132880.1547870.064*
C190.1377 (3)−0.4860 (4)0.1444 (3)0.0774 (9)
C200.0177 (2)0.0556 (4)0.1499 (3)0.0663 (8)
F1a0.1920 (7)−0.5559 (10)0.2203 (7)0.125 (3)
F3a0.0422 (5)−0.5177 (10)0.1291 (7)0.101 (3)
F6a−0.0607 (8)−0.0103 (14)0.1545 (10)0.112 (4)
F1′a0.2287 (7)−0.5661 (10)0.1883 (8)0.134 (3)
F3′a0.0819 (10)−0.5374 (12)0.1776 (10)0.191 (6)
F6′a−0.0677 (6)−0.0156 (16)0.1276 (11)0.129 (5)
F20.1286 (2)−0.5476 (2)0.06383 (19)0.1223 (9)
F4−0.00985 (15)0.1597 (3)0.07954 (16)0.1039 (7)
F50.04895 (15)0.1423 (3)0.22760 (16)0.1035 (7)
O10.54603 (13)0.0733 (3)0.19655 (15)0.0733 (6)
O20.69088 (14)0.3898 (3)0.00556 (15)0.0751 (6)
  1. aOccupancy: 0.5.

Source of material

An amount of 5 mL (25%) of sodium hydroxide aqueous solution was added dropwise to the mixture of 7-methoxy-1-tetralone and 3,5-bis(trifluoromethyl)benzaldehyde in 10 mL methanol and stirred at room temperature for 3 h. The in process-control was monitored by silica gel thin layer chromatography (TLC, 254 nm). When the reaction was stopped, the precipitate was filtered from the reaction and dissolved with ethyl acetate. The organic phase was washed successively by water and brine, and dried over anhydrous sodium sulfate. After filtration, the ethyl acetate was condensed in vacuo to yield a white solid, which was purified by silica-gel column chromatography (petroleum ether: ethyl acetate = 1:2, v/v). Suitable crystals of the title compound were obtained by recrystallization in dichloromethane and methanol (1:1, v/v) system and dried under vacuo at 65 °C for 3 h.

Experimental details

The H atoms were placed in idealized positions and treated as riding on their parent atoms, with d(C–H) = 0.97 Å (methylene), Uiso(H) = 1.2Ueq(C), and d(C–H) = 0.93 Å (aromatic), Uiso(H) = 1.2Ueq(C).

Comment

During inflammatory neurodegenerative diseases in the central nervous system (CNS), microglia are activated and polarized into pro-inflammatory M1 phenotype, which mediate neuroinflammation and play a key role in the progression of brain diseases [4], [5]. The inflammatory process may lead to excessive release of inflammatory mediators or cytokines, such as tumor necrosis factor-α (TNF-α), interleukin (IL)-6 and so on [6]. The activation of NF-κB is a result of underlying inflammation and the expression of the inflammatory cytokines, including IL-6 and TNF-α can be down-regulated by inhibiting the activation of NF-κB, and play an anti-inflammatory role [7], [8], [9]. Furthermore, inhibiting the activation of NF-κB can produce anti-neuroinflammatory effects on activated microglial cells [10]. Therefore, the study of NF-κB inhibitors with anti-neuroinflammatory properties and low toxicity is of great significance in the treatment of inflammatory neurodegenerative CNS diseases [11].

Existing studies have used 3,4-dihydronaphthalen-1(2H)-one (DHN) derivatives with anti-tumor and anti-inflammatory activities as novel allergic and inflammatory responses modifiers [12], [13] and as potential retinoic acid (RA)-metabolizing enzymes inhibitors to treat skin diseases and cancer. However, DHN derivatives are rarely developed as anti-neuroinflammatory drugs, so the synthesis of novel benzylidene-substituted DHN derivatives with anti-neuroinflammatory activities are of great significance. Our group also synthesized some of these compounds in the early stage, and studied their anti-neuroinflammatory activity. The results showed that the fluorine-substituted compounds had higher activities [14], [15]. In this study, a new benzylidene-substituted DHN was designed and synthesized through Claisen–Schmidt condensation reaction.

The crystal structure analysis revealed that the title compound crystallized in the monoclinic space group P21/c. The ORTEP diagram is presented in the Figure. There is only a drug molecule in the asymmetric unit. The configuration at the C(2)=C(11) olefinic 3,5-bis(trifluoromethyl)phenyl and carbonyl moiety showed an E stereochemistry [7], [16]. Because of the distorting effect of 3,4-dihydronaphthalen-1(2H)-one, the 7-methoxyphenyl and 3,5-bis(trifluoromethyl)phenyl groups are not coplanar with each other, with a dihedral angle of approximately 70°. This twisted configuration may increase likelihood of interactions with bioactive molecules, for the purposes of creating more potent biological activity [17]. Bond lengths and angles are all in the expected ranges [17], [18].


Corresponding author: Qing-Guo Meng, School of Pharmacy, Collaborative Innovation Center of Advanced Drug Delivery System and Biotech Drugs in Universities of Shandong, Key Laboratory of Molecular Pharmacology and Drug Evaluation (Yantai University), Ministry of Education, Yantai University, Yantai, PR China, E-mail:

Funding source: National Natural Science Foundation of China

Award Identifier / Grant number: 2020XDRH105

Funding source: Science and Technology Innovation Development Plan of Yantai

Award Identifier / Grant number: 2020XDRH105

  1. Author contribution: All the authors have accepted responsibility for the entire content of this submitted manuscript and approved submission.

  2. Research funding: This work was supported by Science and Technology Innovation Development Plan of Yantai (No. 2020XDRH105) and the National Natural Science Foundation of China (No. 81473104).

  3. Conflict of interest statement: The authors declare no conflicts of interest regarding this article.

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Received: 2020-08-17
Accepted: 2020-09-23
Published Online: 2020-10-12
Published in Print: 2021-01-26

© 2020 Ming-Zhu Luan et al., published by De Gruyter, Berlin/Boston

This work is licensed under the Creative Commons Attribution 4.0 International License.

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